RNA id: XM_021615685.2


Basic Information

Item Value
RNA id XM_021615685.2
length 2652
RNA type mRNA
GC content 0.48
exon number 12
gene id LOC110532074
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40745623 ~ 40759016 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGCTTTGGGCACTTGAGTGAGAATCATCCTATGACTACAATACCCAACTTCGCCTACAATATCTAAAAAGAGGTGGAGCATGTCCGGTCTGGAAAGCGGTTACTGAGGAGAAGATGGTGGAATTTGAAACAGTAATGTGCTCGATACTCTGTCCCAAACACTTTGACAAATATTTTCTATCTCAACCTGGCATTAGATATCGGCTACCCGGAGACAATCACAGATAATATATTCTGAAACGTTGAAGAAAACGAGATTCATCGAGTTGTAAAGCTAACTCAATGATATTGTCTGCCGTGGTGGCTGAAGCGTGGTGCCACTGAAAACGCGACGTGGGTGTATTGTTAGTTTGGCTAGCCAAGTTTTGGCTATATTTGTTTTGGAAATCTGGTGTCATCGCACAAACTGAGAACTTGAATATCCTCTGGGATTGTGTTCAAAAGACTGACACCGGTGGTGCCCTGCTGACAATTGGAAGGGAAGTGGTGAAGAAACCTGACTGGCGACATGCCAAGGATTAAAAAAGGGAAACGTGGTTCAAACAAGTGCGGGAGGAATGGGGTGAAGGGTGAGTCGGGTGCCAGTGATGATGAGCTGGCGTCTGACGTGCTCAGTCACTACAGCAGCGCCAGCGAGAGCGCCTCAGTCGTGGACGAGGCCACtgGGGGAGGTGGTGAGCCAGTAGATGAACAGACTgcccaggaggagacagaggacaaGCTGAAACAATGCATAGATAACCTGATGGACAAAAGTGCAAAGACGCGCCTGGCAGCCCTAGACTCTCTGGGAGGGGCCTTTTCCTCCAAGCTGCTCTATGACTTCCTGTTAGAGAGACGCCTCACCGTCAGCGACTGCCTGGAGAGGAGCCTGCGCAAGGGTGGTGGAGAGGAGCAGGCTGCAGCGGCCACCGTGTGTGCCCAGCTGTGTGTGCAGCTCGGCGGGGGGGACGAGGGTGAGGAGGGTTTCAAGATCCTCCGGCCCGTGCTCAGCGCCATCATGATTGACGGCTGTGCCAGTGTGGCCGCCCGCCAGAGCTGTGCCCGAGCGCTGGGTATGTGCTGCTACGTTTCTGCTGCGGAAGACGGAGAGGACTTGGTGAAATCCATGAGTCACCTGGAGAGTGTGTTCACCATGTCGTACCCCAACCGCGAGGGCACCCTGCCCACCCCCAATGCCGGTACCCCTGGGCTCCACGGCGCTGCCCTGCATGCCTGGGCCCTGCTCGTCACCCTCTGCCCCGCCTCCCGCCTCACTGTGCTACTGGACCTACATCTACCCAAGCTACAGGCCTGTCTGGAGAGCAGCGACGTGAACTACAGGATAGCTGTGGGGGAGACAATCGCCTTGCTGGTTGAACTGGgaagagatatagacaggGAATTTGAGTTTGAAGACAGCGACACGCTGTGCGAGTCCCTGAAGGGCTTGGCCACCGACGGCAACAAGCACCGTGCCAAGAACGACAGGAGGAAACAGCGCACCATATTCAGAGAGGTGCTACATTACATCGAGAATGAGGACTTCTCCGAGGAGAAGATCCGCTTTGGTGTGGAGGGCATCTACATCGACAGCTGGATGCGCAGGAGGGTCTACGACGCCTTCAAAGAGGTGCTGGAGTCTGGAGTGAGACACCATCTTCAGTTTAACCCGCTGCTGAGGGACATATTTGGCCTGGGACCCCCCCTGATACTGGACTCGTCTGTCAAATCCAGCAAGATCTCCCGTTTCGAGAAGCATCTGTTCAACTCCGCGGCATTCAAAGCCAGGACTAAACTAAGGAACAAAGTGAGGGACAAGAGAGCAGATGTGATGTGAGGAATTGATGAAAGTGCCGTAGCCATATAGGACGAGGACTGAGAAGAatactggggtgtattcattgaAGCGAAAGGTCTGGAATGTTGGAGACCAATGTAATGAATAGAGCTGACTTGATTTCCTAGTCAAAATGACAGACAATCCTATCTGTTCTACACAGTACATTTCTATAGTGAACCTTCTGTAACGTTGCATTGTCATCCTGCTCCCTACTCTTCGTCTCACAGGACCCAGTGGCTGCTGCCATACCAGGGACTTTGCAGACAGTGCAaacgtgtgtttttattttatttaacaccTCATTAAAACTGACCTATGAGATGCctgaaaataaaacaaaaaggttGTTTATTGTACCTTTTTTAAATTAGTATTTTGGAAGAACATCTAAAACCGTTTTTGGTCATGTATTTTACTTTCTAATTTATTGAAAGTGGGAGAACAGTATGATTTTTAAAGTAAGTTATTTTTAGACTTCAAATATGGGAAGAGGACTAAGAGAATTATGGTGTAATTTTTCATGTATATTTTTATGCAGGTTGGTTGTGCATAATGCATATGTATATACAAATGCATATGTATGTATTCAAGGAGTGCATTGAAGAATGGAGATGTATTTTGACAAGCAATGCTATGTAATAACCGAAAGGGTTCGGCAAATTAATTGATTATGGATAAATTAAATGTAATAAACACTCACACCAAGACTATTTTTTGATTATTTTCCTTAAGtgggtttaaaaaatatatttgaatgtTGACATTGTACTGCAGATACCAAAGGCAAGGCATGAAAAGGTACCaattaaactcagcaaaaaaagaaactta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915158 lncRNA downstream 165 40745192 ~ 40745458 (-) True G804237
TU915146 lncRNA downstream 25201 40720215 ~ 40720422 (-) True G804225
TU915077 lncRNA downstream 151957 40592586 ~ 40593666 (-) False LOC110531175
TU915078 lncRNA downstream 152169 40592586 ~ 40593454 (-) True LOC110531175
TU915066 lncRNA downstream 160987 40584422 ~ 40584636 (-) True G804154
TU915164 lncRNA upstream 333 40759344 ~ 40759576 (-) True G804241
TU915162 lncRNA upstream 636 40759647 ~ 40760196 (-) True G804239
TU915163 lncRNA upstream 5606 40764617 ~ 40765378 (-) True G804240
TU915169 lncRNA upstream 7334 40766345 ~ 40766615 (-) False G804245
TU915171 lncRNA upstream 7334 40766345 ~ 40766706 (-) True G804245
XM_021615682.2 mRNA downstream 1930 40731121 ~ 40743693 (-) True zgc:136971
XM_036987988.1 mRNA downstream 86184 40593513 ~ 40659439 (-) False LOC110531175
XM_021615680.2 mRNA downstream 295605 40446805 ~ 40450018 (-) False selenok
XM_021615679.2 mRNA downstream 295606 40442893 ~ 40450017 (-) False selenok
XM_036987984.1 mRNA downstream 295820 40442893 ~ 40449803 (-) False selenok
XM_036986943.1 mRNA upstream 1541 40760552 ~ 40762438 (-) True LOC118965936
XM_021615686.2 mRNA upstream 15154 40774165 ~ 40817545 (-) False prkar2aa
XM_021615687.2 mRNA upstream 15154 40774165 ~ 40817548 (-) True prkar2aa
XM_021615688.2 mRNA upstream 85056 40844067 ~ 40866839 (-) True mgll
XR_005053248.1 mRNA upstream 118030 40877041 ~ 40878945 (-) True LOC110532083
TU915049 other downstream 171673 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 295683 40395732 ~ 40449940 (-) False selenok
TU914915 other downstream 295683 40442837 ~ 40449940 (-) True selenok
TU914001 other downstream 777649 39967244 ~ 39967974 (-) True LOC110531168
TU914000 other downstream 782642 39961467 ~ 39962981 (-) False LOC110531168
TU915238 other upstream 103578 40862589 ~ 40912358 (-) True G804307
TU915185 other upstream 146361 40905372 ~ 40906872 (-) False wdr6
TU915184 other upstream 149584 40908595 ~ 40915974 (-) True wdr6
TU915182 other upstream 225471 40984482 ~ 40985245 (-) True G804255
TU915509 other upstream 678019 41437030 ~ 41437971 (-) False G804543

Expression Profile