RNA id: XM_021615686.2


Basic Information

Item Value
RNA id XM_021615686.2
length 3254
RNA type mRNA
GC content 0.46
exon number 11
gene id prkar2aa
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40774165 ~ 40817548 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACTGTGTCTTACGTTCATCCCTGTAGAGTGACCACGCCCCCGAAAATAACGCTCGTGTGGTGGAGcaagaaaaagaaaaaagaagaGCCTCAACTGTAGGCAGAAACGGATTTACCGAATATCACAAGTGACGATACCAACATACCACACATTTTTTTTGAAACACTGGGTAATTTGGATTCAAGGTAACGTCTAGGTTGTCCCTGACGCTCCTTGTTTACAGGAGCTTGGGATACACCGGTTTCGGATTGTCTGAACTGCCTGCAATCGTAACATCAGACGCTTCTAGCTAGCCAGCTTGTTGGCTAGTTTAGTTACCGGTAGCTAACTAAAGTAACGTGATCCATTAGCTATAACCGCCGTTACTTATGCGTATAATAAATACTAAGTCAGCCCTCGGCTATTTAATTATATGTTCTAGTTAGTTTATTTAATCGGAACAAACCTGTTAGCTAAAGTTAACTTACATTCACAAGTCCCACCCTCCAAAGTATAATTAATTATATGCTAAATTAGCTGGATAGTTTGCTAGCTGGTGTAACAGTAGTAAGTAGCTACGTCGTCTGTTCGCTAATCAGCTAGCTAGTTTAACTCAGATTGGATATAattagttagctatctagctaggtcAATTATTCCGTGCTGTTGATATTGATCCGTTATACCATTAGCCGGAGGGGTTGAGCCGCTACCCTGGCAAGGAGACGGGCGAAAAAGAGGAGGCGAAATAAAGAGAACAGGGAGGCCAGCGAGGGAACCAGCTAACGGTCGTTAACATTTGTGCTAACGTTTACGGGTCAGCTGTCATAAAAGCATCTAGCGAGCGAGCGAGCTATCTAGCTAACGCTAACTTACCCAACTTGACAGCTCAGTCAGATATCATAAACTAACGCTAACGTCACTGGTCATATTTCATTCTTTACACAAGACCGACCTCCCTTCGACAAAAAGAAGTGTCACTATTTGCTTGGACATTGTGTTAGCTGGCTTAACTAAGCAACCTCTCCGGTGAACTGCTCATCAATGTCAGCAAGCTAACCCAGTTTCTCTGACGCTATTACCAGTGTCAGCTATCTCACAGTAGCTAACTAGCGTGCTACACATGGACTGATAGAATtcgtagctagctacatttatatttttgtaagAAAAACACAGTATACCTGAACATATTTGTAGTTAGGTAGCGCCATCTAAACACAGTCATGAGTATCGAGATACCGGTGGGATTGACGGAATTGCTGCAAGGCTACACGGTGGAGGTGCTTCGACAGAGGCCACCGGACCTGGTGGAATTCGCCGTGCAATATTTCACGCGCTTGCGGGACACCAGAAGCCAAGATGGGGCGGGTGCTGCTGTCAAGCTCGGGAAAGGAGTGATGTTTGATGGGGAGCCGATGCAAACCGAGTCAAATGGAGACGAAGACGGGTCCGACGAGTCTGATTTCGAGCccCCTCCCCCAAGCAGATACAACCGCAGAGTGTCAGTGTGCGCGGAGGCCTTCAACCCAGATGACGATGACGAGGTGGAGGAGCCGAGGGTGGTGCATCCCAAAACAGACGAGCAGCGCTGCCGGCTGCAGGACGCCTGCAAAGATATTCTACTGTTCAAGACCCTGGAACAGGAGCAGTTCTCGGAAGTCCTGGACGCCATGTTTGAACTGCGCGTACAGCCCCAGGAGCATGTCATCGACCAGGGAGATGACGGAGACAACTTCTACGTTAtcgagagaGGAATCTATGACATAGTGGTACTGATTGATGGCGTAGGGACGTGTGTGGGGCAGTATGACAACAAAGGCAGCTTCGGGGAGTTGGCACTGATGTACAACACCCCCCGCGCTGCCACTATTATTGCCACCCAGGAGGGGGCGCTCTGGGGCCTGGACCGGGCCACGTTCCGTAGGCTCATTGTGAAGAACAATGCCAAGAAGAGGAGGCTGTACGAGCAATTTGTGGAGTCTGTGCCTCTACTGAAGTCTCTggagTTATCCGAGAGGATGAAGATTGTGGATGTATTAGGAATGAAGACGTTTTCCGATGGAGAACGCATCATCATGCAGggggacagggcaGATTGTTTCTACATTGTGGAGACTGGAGAAGTGAAGATTATGATGAAGAGCAAAACAAAGATGacAAAGGCGAACCAGGAGGATAATGTGGAGGTTGAGATCACCCGCTGTAGCAGGGGTCAGTACTTTGGGGAGCTGGCCCTGGTCACCAACAAGCCCCGCGCTGCATCAGTGTATGCTGTGGGAGAGGTCAAGTGCTTGGTAATAGACATTCAGGCGTTTGAGCGTCTGCTGGGTTCCTGTAAGGAGATCATGAAGAGGAACATCACCCACTACGAGGAGCAGCTGGTAGCTCTGTTTGGCTCCAGCATGGACCTGAGAGACTGACCACCCTTCTCCGTGCCTTACACAAGCAAATTTACATGAATGAAAAGATACCTACACATTCAGACGCACCACTTACATAGTATAAGTACACCCTGACACACAGATTTTCTAGCTCAACCCTCCTTTATAAGCTCACTAATAGGTGTACACACACTTTCTACTCACCCCGAAATATCACACGCCCTCTTACAGTTGCTTGAACCTGCTTCAGCCTCTTTGTTTTGAATTGAAAAAGCAATGTCCCTGCTGATACAACCCTGCCACCGCCACAGCACAGCAAGGACATACTACACGCGTGCACTCAGACATGAAGGCTTGTCCTTTCTctcacagatgcacacacacacacacacacacacacacaccaaacctcAGCCAAGGACCCATGCGCACACACAGGCACCACCCACACTTTCAAATACAGACACCTGGTGAAAAAGAACATACATTTAAAAAGAGAGCAAATTAAAAAAGTAAAAAGGTTTAAAGAGAAGTTTTAGAATCATTTTATGAAGATAAACCGAAGCTTTGATAAAATATGATTTAAATAAAAAAGTGTTTATTTGGGGTTGAGTCCTTTCTGAAAGCTCCCCTGCTGTTGTTGATTGATTCAGTTAGTGCCGGTGATTACCACAGAGGACCCTACGTTTCAGGGCTATTGTTATCATTAATCCACACATGTTGTATTGATTAATGTATTATTATATATTCATTATTTTGTTTTACTTTGACCAATTCAGATATAAAGCACCATCTCCGACAATGTCAAACAAAAATCTAGTGCTTATTTCTCCTTGATCATTCTGAATGAGTTGTCCTGGATAAGAATAAAGCAAACATTTTTATTATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915127 lncRNA downstream 5581 40767109 ~ 40768584 (-) True G804206
TU915171 lncRNA downstream 7459 40766345 ~ 40766706 (-) True G804245
TU915169 lncRNA downstream 7550 40766345 ~ 40766615 (-) False G804245
TU915163 lncRNA downstream 8787 40764617 ~ 40765378 (-) True G804240
TU915162 lncRNA downstream 13969 40759647 ~ 40760196 (-) True G804239
TU915189 lncRNA upstream 100362 40917907 ~ 40918478 (-) True G804262
TU915179 lncRNA upstream 101235 40918780 ~ 40921278 (-) True LOC110531177
TU915173 lncRNA upstream 165859 40983404 ~ 40984266 (-) True G804247
TU915186 lncRNA upstream 191344 41008889 ~ 41009137 (-) True G804259
TU915196 lncRNA upstream 192506 41010051 ~ 41010825 (-) True G804269
XM_036986943.1 mRNA downstream 11727 40760552 ~ 40762438 (-) True LOC118965936
XM_021615684.2 mRNA downstream 15149 40745623 ~ 40759016 (-) True LOC110532074
XM_021615685.2 mRNA downstream 15154 40745623 ~ 40759011 (-) False LOC110532074
XM_021615682.2 mRNA downstream 30472 40731121 ~ 40743693 (-) True zgc:136971
XM_036987988.1 mRNA downstream 114726 40593513 ~ 40659439 (-) False LOC110531175
XM_021615688.2 mRNA upstream 26522 40844067 ~ 40866839 (-) True mgll
XR_005053248.1 mRNA upstream 59496 40877041 ~ 40878945 (-) True LOC110532083
XM_036987997.1 mRNA upstream 68933 40886478 ~ 40895309 (-) False LOC110532079
XM_036987995.1 mRNA upstream 68933 40886478 ~ 40897567 (-) False LOC110532079
XM_036987996.1 mRNA upstream 68933 40886478 ~ 40897578 (-) False LOC110532079
TU915049 other downstream 200215 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 324225 40395732 ~ 40449940 (-) False selenok
TU914915 other downstream 324225 40442837 ~ 40449940 (-) True selenok
TU914001 other downstream 806191 39967244 ~ 39967974 (-) True LOC110531168
TU914000 other downstream 811184 39961467 ~ 39962981 (-) False LOC110531168
TU915238 other upstream 45044 40862589 ~ 40912358 (-) True G804307
TU915185 other upstream 87827 40905372 ~ 40906872 (-) False wdr6
TU915184 other upstream 91050 40908595 ~ 40915974 (-) True wdr6
TU915182 other upstream 166937 40984482 ~ 40985245 (-) True G804255
TU915509 other upstream 619485 41437030 ~ 41437971 (-) False G804543

Expression Profile