RNA id: XM_036987996.1


Basic Information

Item Value
RNA id XM_036987996.1
length 4516
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC110532079
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40886478 ~ 40897584 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTGTGTGATAAGACATGAAATGCTAGTGAAATCGTGGGATGTTCTACTTATGTCCACCTTTTATCATGCCAATTGAAAGTCACACCATGACATAGTTGACTACTCGATTCTGGTTGCGCTGGAAGGGAAGTCAGTTCGATCCATTTTTATCCAGTCCGTGAGACATGTTCCGTTCTCCATAACTTTTCGCTCCTTCTGTCATTCCAAAGCACACGGGAACAACAGACACTGAAATACAACCGGACTTTGTATACCAGCTCACTTTTCCCTTCTCCTACTGATAATGCTATCCGATGAGGAGCCGAGTTTAGTTTATTACAGCGAGAGGCATCTGACTTCACTTACACGCGTGACTCACAGTGCTTCTTGGACCATGTATCATGGAACGGGCCCAGATAGATCCAGTCCCCACTGTCGACAAGATCTTGTGGAATTATTAAGGAATAATTCATGATCCAAATGTAATCAGGGGCATTTCCACTCCCAATCTGTGTTTGTTAACGGTTCCTAAAAGATTAGAGTATTACAGTAGTTTTGTGTTTCCCTGATTTCATATGTGTGTGGAATGTTTTCCTCAGGTCTCCACACTGTTGTAGGCGGTGAGGGATTGGTTCAGTGTAGTACAGGCTGATGTCTTGTAATCCAACaaccattataaactgggtgattcGAGCCCTgactgctgattggctgaaagctgtggtatatcagaccgtatgcaATGGGTATGACATTTACATTTTCTTTTTACGGctttaattatgttggtaaccattttataatgcccctcaggggtttgtgatatgtggccaatataccacggctaagggctgtgtcctagcACTCTGCGTTGTGTCGTGCCTAAGACCAGCCcgagctgtggtatattggccatatacaccACACCgcttcgggccttattgcttaactatACTAGTGGTTGTAGGATTTCGACAATACATTCGTTTGTTACATAGCTTAAGTCCTGTGAATGTGACAgtgtgctgtttaatcaactgCAGATGGGCCAGGATATCAAGGAGTTTGCTTGGGTTCTCCCTCTTGGGAAAGGCCCTACTTTTAAGCCAGGGCTCTTTTggttccgtcccaaatggcatcctattccctgtgtagtgcactacttcggGTGCCATTCTGTCTGAATGCGAGCCACGATAAAGGAAGTTTTCAGCAGCGTTGAATCGCTGAGGGGAAGGGAGCGGATTGCCCGCTGCTCTGAGCAGAGTTCAAGGCTTCACTCCACCCTCCCCGGCACACGTGGTGTACGGTAAACACACTCACATGACATCAGCCTGCTCATTCTCTCTGGACATAGTTGTGTACAGGTTTTGTCTTCACCTAGTATTTagtctcccacacacacacggtcgGGTTATTTTTCTATTTAATTGCTATGCTATTCTTTTGCACTTTCACTCTAATTATATCTAAACTGGCTCACTGAACTATTCAGACACAAAATAGAGAGAAATTGGCAAATGGAAAATTGGCAGCAGTCAGACCGTCCTTATATAGCAGTGCTGGAGAGTGTTCCTGCACAGTGCCTTTGACTTCGAGATGGACAGTATTATTCTTAATCCGGTCCGGCCTGATCACACAGCCATGCTGGACGAAGCACAGTTGGATATACTGGGTCAGCGGTTGGGAAAGAAGTCCCGGTCGGTTTGGGAGAGGGTGAAGGCAGAATGCTGgtGTTCTGGTCCCAGGCTGAAGAGCTGCATGTTGTCAtctgttcctgtcctctcctggctGCCCCGCTACTCCCTCAGAGACAACGCCATCGGAGACCTGATTTCGGGCGTCAGTGTGGGTATCATGCACCTACCCGGAGgcctGTCTAATGCGTTGCTGGCCGGGGTGCCGCCTGTGTTTGGTCTCTACACCTCTTTCTATCCGTCGGTCATCTACTTCATCTTTGGGACGTCCAGACACCTCTCAGTGGGTACTTTCGCCATTCTCTCTATCATGATTGGCACTGTGACGGGCAATGTGGAGTTGCTTAGCAACGGTGTCGAGGAGCGGGAGGGCGATGGAGGGATGGCTCGAGTGTGTGTGGCAGTACAACTTACCTTCCTTTGTGGCCTTATACAGATAGTGTTGTTCttgatgagaggaggggatgtgTGTCACTGGCTGTCTCAGCCCCTGGTGAGTGGCTATACCACGGCGGCAGCCCTTCATATCACCATCTACCAGCTGCCTCTACTCTTTGGCATCCCGACCCACAGACACAGCGGTTTCCTGGCTGTAGGCTGGACGCTGGTTGATGTGCTGTCTAGAGTGACTAACGCAACGCCTGGGACGCTGGTTGTCTCCGCCATCTCCATGGTGATCCTGGTGGGAGGCAAGATGCTGAATAGACTCTTCAAGACCAAGCTACCCATGCCCATTCCATGGGAGCTAGTGCTgATAACGCTGGCCACCTTCCTGTCAGTGCAGTTGGACTTGTCAGGACAACATGGTGTCCAGGTAGTAGGACACATACCCACTGGCTTGTCACCCCCAGCCCTCCCCTCTCTAGCCCAGGCCAAACAGCTGTTTGGTCCTGCTCTGTCCCTGGCTGTGGTGGGCTTTGGCTTTACCTCCTCCATGGGCAGAATGTTTGCACACAGACATGATTACGCCATAGACAGCAACCAGGACCTGTTGGCGATAGGACTCTGCAACACAATTGGAGGGATGTTCCACTGTTTTGCCGTCAGCTGCTCGTTGTCACGCAGTACGGTCCAAGAAAGTATTGGGGTGAAAACTCAGGCGGCTGGGCTTCTCTCTGCTCTGATGATGCTCACCATCTTGCTGAAGATTGGACATCTCTTTGAGCAGCTGCCAATAgcaGTGTTAGCAGTGGTCATTGTGGTAAATCTGCAAGGAATTCTGGGTCAGTTTCGGGAAGTCCCAGTGCTCTGGGCATCTGACCGTTTGGACCTGCTGGTGTGGGTGTTCACCCTGATCTTCACCCTGATTTTCAACCTGGATCTTGGCCTGGCTGCTgctctggccctctctctgatCACTGTCGTCTACAGGACTCAACTCTCCCACAGTGCAGTGCTGGGTCATATTCCTGGGACGGACTGCTACAGGGACCTACGTCTCTATGCTGAGGCCAGGCCGGTTCCTGGAGTTACTGTATTCTCCTGCTCCAACCCGCTGTACTTTGCAAATGCTGAGCTGTTCTTCAGCTCTCTCAGAAAGTCTGTGCAGCGTGTCCAACTGGAGAATGCAGCCCTCATTGAGAACCAGCCCTTACCTCAAATGCAAGGCGCAAGGCACTGTCTGGTGCTAGAGTTTAGCTCAGTCATCTTCATGGACTCTATGTCAATCAAAGCACTATGTAAGGTTGTGGAGGAAATGGAGGAGCAGGGGGTCAGTGTGTTTCTGGCTGCTTGCCCAGGACCACAACACAGAGCTGAGTGAGTGTTGATGTGCAGCCTGCAGCTCATGGAGTGGATGGGAAAATGCCACCGTGGAATTCCTGCCTCAATCAGAATACGCAGTAGACTGAACTCCCAGCTCAAGCTGGCGTCGGCGATAGGACGATGAAAATGCTTTCCTTTTGAGCTCCTTCACCAACGCTGTGGTTCAACGTCTTCTTTTGAGCTGCAGACAGCAGATGGATTGGAGCCAGCCGGAGTccgtctgtccatctctctgtctgcctctgtcagtGTGCCTGTCTTCCAATCTCTAAAACATGTCCAGATCCAACCACCCCCTGCGCCACGATTAGGGGTGTCTGTGGGGGTTTAATGGTTGGGCGTCGCTCCTGCACCTCCTCCAATGAGATCAGACACTCATGGGAAGTGGGTGAGCTCGGCTGatgtcaatcaaatcaaattgtattagtcacatgcgccgaatacaacagctgtagaccttacagtgaaaggtttacttaaaaaaatatgagatagaagtaacaagtaattaaagagcagcagtaaaaaataacaatatatacaggggggtgcgggtacagagtcaatgtgcggtgtcACCGAttggttgaggtagtatgtacagtacatgtaggtagagttaattaaagtgactatgcatagatagtcttatggctgtttagaagcctcttggacctagacttgccgctccggtacctcttgccatgtggcagcagagagaacaccCAGACAGAATTGACTGTCATTCGTTGTTTGTATCATCGTTTCAATTTCCATTGCAGGCCAACTGTATTACTGGCATTGCCTGGGTGGGTTTGTGCTACACAGAAATAAATAAGGACCGAACTGACTCGCCCTCTTGTGACAATGTAGTTCAGGAGGGCACATTTGGATGCTTTTCTCAACCTCGGTCAGTGAAAGGTTGTACAGGTTATGACTTCAGTCCACATGCTGATAGCCCACTGCGGTTATGTTGTTGAACTACGAGACCATACTGTCAGGTCTTTCATTCTGCGGTGTGTTTTAGAAGACTTGGAAACAGAAGTTGTCTCCCATAAAAGCTTTATTGAAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU915201 lncRNA downstream 98580 40787523 ~ 40787898 (-) False G804273
TU915202 lncRNA downstream 98580 40787523 ~ 40787898 (-) True G804273
TU915127 lncRNA downstream 117894 40767109 ~ 40768584 (-) True G804206
TU915171 lncRNA downstream 119772 40766345 ~ 40766706 (-) True G804245
TU915169 lncRNA downstream 119863 40766345 ~ 40766615 (-) False G804245
TU915189 lncRNA upstream 20329 40917907 ~ 40918478 (-) True G804262
TU915179 lncRNA upstream 21202 40918780 ~ 40921278 (-) True LOC110531177
TU915173 lncRNA upstream 85826 40983404 ~ 40984266 (-) True G804247
TU915186 lncRNA upstream 111311 41008889 ~ 41009137 (-) True G804259
TU915196 lncRNA upstream 112473 41010051 ~ 41010825 (-) True G804269
XR_005053248.1 mRNA downstream 7533 40877041 ~ 40878945 (-) True LOC110532083
XM_021615688.2 mRNA downstream 19639 40844067 ~ 40866839 (-) True mgll
XM_021615687.2 mRNA downstream 68930 40774165 ~ 40817548 (-) True prkar2aa
XM_021615686.2 mRNA downstream 68933 40774165 ~ 40817545 (-) False prkar2aa
XM_036986943.1 mRNA downstream 124040 40760552 ~ 40762438 (-) True LOC118965936
XM_036987998.1 mRNA upstream 446 40898024 ~ 40904180 (-) True LOC118966048
XM_036987992.1 mRNA upstream 7160 40904738 ~ 40916073 (-) False wdr6
XM_036987990.1 mRNA upstream 21148 40918726 ~ 40972149 (-) False LOC110531177
XM_036987991.1 mRNA upstream 27037 40924615 ~ 40972151 (-) False LOC110531177
XM_021615692.2 mRNA upstream 87891 40985469 ~ 41000703 (-) True dalrd3
TU915049 other downstream 312528 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 436538 40395732 ~ 40449940 (-) False selenok
TU914915 other downstream 436538 40442837 ~ 40449940 (-) True selenok
TU914001 other downstream 918504 39967244 ~ 39967974 (-) True LOC110531168
TU914000 other downstream 923497 39961467 ~ 39962981 (-) False LOC110531168
TU915185 other upstream 7794 40905372 ~ 40906872 (-) False wdr6
TU915184 other upstream 11017 40908595 ~ 40915974 (-) True wdr6
TU915182 other upstream 86904 40984482 ~ 40985245 (-) True G804255
TU915509 other upstream 539452 41437030 ~ 41437971 (-) False G804543
TU915510 other upstream 539452 41437030 ~ 41437807 (-) True G804543

Expression Profile