RNA id: TU915185



Basic Information


Item Value
RNA id TU915185
length 759
RNA type TUCP
GC content 0.58
exon number 4
gene id wdr6
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 40904738 ~ 40916073 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGGACACCAGCTTGACCGTCCTGGCGGTCCGACCGCAGACGGGCGCGGTCAGAGTGTTGTCGGTCATCACCGACCACATCTCAAATGTTCGGACTCTGACagcagtcaaacgtttggatGGAAGGACTGACAGAGGGACAGATGAACAGACAGAGTCCCTCTCTGCCCTGCTGGTATCTGCAGGTGGACGCGCACAGATGCAGTGCTACCGGCTGCTGATTGGAGGAAATGGACAGTTAGGCTTGCCCTCCTGTCAGGTGATACAGGTGGCCAGCCACCGATTGGACGATCAGTGGGAGAGAATGCGGAACCGACACAAGACTGTGAAAATGGACGCAGAAACCAGGTACATGTCCATTGCCGTGGTGGATGATGGGACAGAGTCGGTCCTCCTGGCGTTGGCCTGCAGTGATGGAGCTGTGAGgctcttCTCAGTCAGTGAGTTGAGGGGAAAGTTTGAGCTCCTGTGGGAGAGCTTCCACCATGAGAGATGTGTACTCAGCATCGCCCCCTGCAGCCTGGAGGATGGACACGGCAATCGacGTGTGTTCCTCTTCAGCGCAGCCACAGATGGAAGGATAGCAGTGTGGGATATGAGCACCGTAGCCAACTCAGACAAGCCCCCTACTGCGGCCCTAGCCCCAACCAGCCCCTGTCTAACAGTCCCCGCCCACCAGAGTGGAGTCAACACCCTGGCCGTATGGGAGGAGGGCCTTGGGGCGGGACATACAGACGGAGCCCGGATAGCATTGGCCAGCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU915201 lncRNA downstream 117474 40787523 ~ 40787898 (-) False G804273
TU915202 lncRNA downstream 117474 40787523 ~ 40787898 (-) True G804273
TU915127 lncRNA downstream 136788 40767109 ~ 40768584 (-) True G804206
TU915171 lncRNA downstream 138666 40766345 ~ 40766706 (-) True G804245
TU915169 lncRNA downstream 138757 40766345 ~ 40766615 (-) False G804245
TU915189 lncRNA upstream 11035 40917907 ~ 40918478 (-) True G804262
TU915179 lncRNA upstream 11908 40918780 ~ 40921278 (-) True LOC110531177
TU915173 lncRNA upstream 76532 40983404 ~ 40984266 (-) True G804247
TU915186 lncRNA upstream 102017 41008889 ~ 41009137 (-) True G804259
TU915196 lncRNA upstream 103179 41010051 ~ 41010825 (-) True G804269
XM_036987998.1 mRNA downstream 1192 40898024 ~ 40904180 (-) True LOC118966048
XM_036987994.1 mRNA downstream 7788 40886478 ~ 40897584 (-) True LOC110532079
XM_036987996.1 mRNA downstream 7794 40886478 ~ 40897578 (-) False LOC110532079
XM_036987995.1 mRNA downstream 7805 40886478 ~ 40897567 (-) False LOC110532079
XM_036987997.1 mRNA downstream 10063 40886478 ~ 40895309 (-) False LOC110532079
XM_036987990.1 mRNA upstream 11854 40918726 ~ 40972149 (-) False LOC110531177
XM_036987991.1 mRNA upstream 17743 40924615 ~ 40972151 (-) False LOC110531177
XM_021615692.2 mRNA upstream 78597 40985469 ~ 41000703 (-) True dalrd3
XM_036988001.1 mRNA upstream 106507 41013379 ~ 41024791 (-) False impdh2
XM_036988000.1 mRNA upstream 106507 41013379 ~ 41024793 (-) False impdh2
TU915049 other downstream 331422 40571014 ~ 40573950 (-) True G804137
TU914916 other downstream 455432 40395732 ~ 40449940 (-) False selenok
TU914915 other downstream 455432 40442837 ~ 40449940 (-) True selenok
TU914001 other downstream 937398 39967244 ~ 39967974 (-) True LOC110531168
TU914000 other downstream 942391 39961467 ~ 39962981 (-) False LOC110531168
TU915184 other upstream 1723 40908595 ~ 40915974 (-) True wdr6
TU915182 other upstream 77610 40984482 ~ 40985245 (-) True G804255
TU915509 other upstream 530158 41437030 ~ 41437971 (-) False G804543
TU915510 other upstream 530158 41437030 ~ 41437807 (-) True G804543
TU916512 other upstream 1220980 42127852 ~ 42139326 (-) True LOC110532119

Expression Profile