RNA id: XM_021615724.2


Basic Information

Item Value
RNA id XM_021615724.2
length 4396
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110532106
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 41967738 ~ 42001368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCACAAGATCAGATATGGCCCAGACCAGTCACGTCTTGTTGGTCTACCTTGCCTCATCCACACGGATTCTGCTTacgttttattttttacatgtctAATATTTAAACTTATATCAATTCTTCTTTCTACTTCAAAGAGAACAGTATAGGTACTGAAAATCACCAGATGACTGGAAATTCTCTAACAGCGGCAAGTAACTACAGTTGGTGGTTACCTAGCAAATTTTCATAAgcacctagctagctaaccacgGATCTTTTACCTACCCAAAATAGCTTGTTAGCAGCTAGAAAACAGAACTTACCTTATTACACGGCTCCAGCAACGCCTCTCGCTTACAGAGGTCGGAAAATTATAAAATGCATGTGTGCTTATTAAAATAGTGGTTACAATCCGGTATATAGCACTGAACCATACTTGCTTCTGATCGACGGAGATGCCTAAGGTTAACTAGTTAGCTACAAAGGCCAGGGTCATGTAAAAAAATTATAGTAATTAAACAATGCTAAGATAGGTCATTTGAAAAATGCGAAACAATACAAAGGAGAAATACACAATATAAATTATTTAAACGAGAAACTACAAAAACACTATAATATCTACTAGTTATTCTACTTGCTAGGTTACTTTCTACTTGTCGATGAGAGTTTGCATGGAGAAATGTGGAATTTGTTCCTACACTGCAACACTGCCTTGAGTTATGATGTCAAAGCTTGCTGAGGATGTGTAATtctatgatagccacattagcggCTAATTATCATTTCATTTcgggggtaaatacaggcaaatatattgataaaagtgaGAGATTTACactgttatcaaaacatcacgccagggtaagcctacatgaaagacagaccttatttgaagtggttttaaaatcccctatgggaaaaatgaatggtggaaaaacgattggaaacATTTCCGTGTTTGACTGCTAGCCTAGGTTTTATGTGTATTATGACTCATATTGTGGTACTCtactgaaatactgtagaattccattcattcttaTGGAGGACTGCACTTTCTGGgaagtgccaatatggccgactggTGGCTTCGGAGCCTCTCACTTACCAAtacatcagcaatccagggtgtATCAGGGGAGATTGTAGAAGAGAGTGCGGGGCGAAGGAGCGGAGAGGGTGTTTTCGTTTGGCTGTAACATGATACCAGTAACGGGAACACAGCTATGGGACAGTAGACATATCCTTGATTTCATGCATTTCGGCGGTAACGCTATCTGGTTCAGTGCTAGGACGACTATCAAAAAAGGATGGGTGTCGCAGAACAAATGAATGAAGGCGAATGATTTTGGAAAAACTAGCAGCAGCAATTGACAGAGAAGTTGCGCAGGCTACATAGCCTAGGGCTATCAGAATAGCCTAGTAAACCGTTTTGCATGGAGATGCATTCACGTCAACAGCATCATGAAGAAGGTGACATATGGCGTTTATGTTTGTGTCGTGTCTACGTTCCTACTTTGTCTAAGATAACACAGTGACACGGCGTTCACAGCAAGATTTGTAGACGCATAAAATAATTTCAAAGAATCACTTCATCGCGGACCTCAGCTTGGAGGATTGGCCTATTTTTACGGTAGGGCGGGGGTGAAAAATCCAGTAGTACGCTAGTTGAAGTTGACCCCTCAGAATACCGGGAACATTTTCAGTGGAATGTATTGCTCATTTAACTCAAACAAAATTATGAATTCGATGGTCTTTGCTGAGGCTTTGCCATCTTCGGGTGCCTCTGCGTTCCCAGTAGGAGCGCCAGCCTCTGGTGCTAGGGTGTCTAGTGCCCTACGGAACGATTTGGGTTCCAACATTCATGCCTTGAAAACCCTTAACCTGCGATTTCGATGTTTCCTAGCTAAAGTTCATGAATTGGAGCGTAGAAACAAGTTGTTAGAAAATCAACTACAGCAAGCTTTAGAGCAATCCCGCTACAGAGCCTACTTTAGCCGAGAACAAGCCACCCAAACGGGCTATTTGGACTTTTTTCTGGCTCGGCCACGGGTACCCGGTACGATATGGAGCTTTACCCACACAAGGAGGTTTGGGGACCGAATCGAGACTATCCACAGCCCTGGGGTGTCATGGATGCAGCCGGATGGTGTTGGAATTCAAGTCGACACCGTCACCCCTGAACTGCGAGCCCTTTACAATGTGTTGGCTAAAGTCAAAAGAGATAGAGATGAGTACAGAAAAAAATGGGAGGAGGAGCTGTCTAAGCGCCAGCAGATGGAGGCCATGGTGGAGACACTACAGGAGAGTGCCCAGGAGTCTGAAGTGGTTCAGGGGCAGCTCACTGAGAAGGTGGAGAGACTCAAGACAGAGCTGGTGGTCTTCAAGAGCCTCAGGACTGACAATAAACACCCAACCAACTTTAAATTGTGCGGACTGGTTCAACTTACTGAAATGTCGGACTTGGACACTGCGATCCAGAAGAAGGCCATGAAGGTGGACATGGACATCTGCAGACGCATTGACATCACGGCCAAGCTTTGTGACGTGGCTCAGCAACGCAACTCAGAAGACATGAGCAAGATGTTCAACATGAGCCCACACATGAGCCCCTCCAGAGCACCCCCAGAGAGCAAAGGGGCTGCATCTTGCAGGAGGAAAGAGCGTAAGGCTGTCTACGAGGAGAGGAGTCCTGAGATTGAAAGTGAGTctggtggtggagaggaggatgaagaggaggagaaggagcaggTCGTAGAGTCACTCAACATCACAGACGAGATGAAACGCATGCTCAATCAGTTAACTTGCTCAGATGATAATTCCTTTGTCACCAGGAGAGAGACGTTTGACTTTGATGACGACTGTGACAGCCTAACttgggaggagaatgaggagacacTGCTCCTCTGGGAGGACTTTGCCAACTACAACACCCCCTGTGCTGCAGCCAGTGCTGCTGCAGCAGAAGGACAGGGGGAGGGCCCTGGGCAGGCCTCTCAGGATGGCAGTTTGGGCAGCCTGATCGACGAGACCGAGATGCTTTTCCAGAACCGAGAGAAGGAGTACCAGGAGACCATGGGTCAAATAGAGGAGTACATGGAGATGTGTTCTATGAAGAGAGGCCTGGATGTGCAGATGGAGACCTGCAGGAGACTCATCAAGGGCTCAGGGGGCACCGGCAGGAACTCTCCATCGTTCAGCTCGGTAGCGAGCAGCGACTCAGGGAACAGTGATGAGATCCAGGAGGAGCTGGAGAAGGACGGAGAGGCAGTAGGAGCTGACCCTTGACCCTCCGGCCCCTGGCTACCCCACCACCTGACCCGgggaagatgatggaggaaatgCCTTTGTTCCTCAATGCTGTGGTCCCCCTTTTCTTCAGCAGGTTTCCAGTTGATCTAAGAGGAGCCCTGTGGAAACTATTGGTGCTTCACCGGTTTACCCATATAGGGACGAACTTGTATTCCACAATAAGGTGCAGTGTTGGTTCCTCCTCACTGATCCTCATTGGCCTACCACTGATCAGAGCGGTCACCCCTACTAAACACAAGTATCTCCACACACACTCAACTTACTGTACGCCTATGGTCATTTTACTGTGTATTCACCCCAGTATTCATCCTAACCATGTTAAGATCAAGGAAACCGGACATATTCAGCCATTAGTGATCTAGCAAAGCATTCAGTGATCCATaggatatatttaagcaataaggcccgaggggatGTGGTGTATGCCCAATTTATTACagttaagggctgttcttatgcacgacacaaCGTGGAgttcctggatacagcccttagcagtggtatattggccatataccacaaacccccgaggtgccttattgctattataaactggtgaccaacgtaattagaagagtaaaaataaatgttttgtcatacccgtggtatacgggcTGATATACCACGActttcagacaatcagcattcagggctcgaaccacccagtttataattcaaAATAAGGCCTAGGTTCTATCAGATCCACGCTAGCCGACATCTGCATAGCAGTTGTTTTGGCGGTGCCTGAGGTGGAACTGCATTAGaactgtcaaatccacaagcggctccGAGCACTATACCTAAAGCAGACATCGCCATTAGCCGCAGAGAGTCGCATGAACAGAAATTCCATGCAGCGTTATTTACAAGTTGGAACGCTGAAccgtgagatgtaatctacacctggattaggctgatagaaatcctcattattcAGTTGAGTGATTTTCAATTTGAGCATCATTATTTCTACatccagttgaagtcagaagtttacatacacttaggttggagtcattaaaacttgtttttcaaccactccacaaatgtcttgtttaacaaactatagttttgggcctcccgggtggcgcagtggttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916086 lncRNA upstream 1975 41965541 ~ 41965763 (+) True G805065
TU915959 lncRNA upstream 173658 41793862 ~ 41794080 (+) True G804948
TU915862 lncRNA upstream 185897 41780833 ~ 41781841 (+) True G804855
TU915833 lncRNA upstream 220540 41746910 ~ 41747198 (+) True G804829
TU915800 lncRNA upstream 255731 41711527 ~ 41712007 (+) True G804798
TU916105 lncRNA downstream 33871 42035239 ~ 42035447 (+) True G805081
TU916107 lncRNA downstream 35719 42037087 ~ 42037287 (+) True G805083
TU916340 lncRNA downstream 87370 42088738 ~ 42088942 (+) True G805303
TU916349 lncRNA downstream 99082 42100450 ~ 42101445 (+) True G805312
TU916350 lncRNA downstream 102865 42104233 ~ 42104622 (+) True G805313
XM_021615726.2 mRNA upstream 10373 41935590 ~ 41957365 (+) True LOC110532108
XM_021615718.2 mRNA upstream 32546 41805973 ~ 41935192 (+) False LOC110532105
XM_036988026.1 mRNA upstream 32546 41805973 ~ 41935192 (+) True LOC110532105
LOC110531179 mRNA upstream 211761 41744404 ~ 41755977 (+) True LOC110531179
XM_021615714.2 mRNA upstream 393795 41498311 ~ 41573943 (+) False soga1
XR_005053249.1 mRNA downstream 20128 42021496 ~ 42027071 (+) False LOC110532114
XM_036988029.1 mRNA downstream 20129 42021497 ~ 42026115 (+) False LOC110532114
XR_005053250.1 mRNA downstream 20464 42021832 ~ 42026111 (+) False LOC110532114
XM_036988031.1 mRNA downstream 20486 42021854 ~ 42025426 (+) False LOC110532114
XM_036988028.1 mRNA downstream 21178 42022546 ~ 42026115 (+) False LOC110532114
TU914750 other upstream 532315 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 946236 41020936 ~ 41021502 (+) True G803728
TU914302 other upstream 1499736 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 1517799 40442896 ~ 40449939 (+) True G803437
TU914248 other upstream 1578686 40386765 ~ 40389052 (+) True LOC110532068
TU916102 other downstream 20491 42021859 ~ 42024403 (+) True LOC110532114
TU916494 other downstream 330725 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 344808 42346176 ~ 42348786 (+) True G805600
TU919016 other downstream 2194347 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 2441294 44442662 ~ 44453077 (+) True G807841

Expression Profile