RNA id: XR_005053250.1


Basic Information

Item Value
RNA id XR_005053250.1
length 3339
RNA type mRNA
GC content 0.43
exon number 3
gene id LOC110532114
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42021496 ~ 42027071 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGATCGACTTTTCCGGTATAGATTGAACAGCAGAGTAGTAGTGCTTTCTGTCGGACTCTTGCACGTTACATTTTTTCATAATATCTTGATCGATAATATGGCTTTTGACCAGTCCTCTGCCAGTGCGTCTGAAAATGCTGAGGCCTCGGAACTTCAGATGATGATAGCAGTCGAGCAACAGAAAGCTCAGTTTGAAGCACAGGTGCACACCTTCACCGACGTGTGCTGGGACAAATGCATGGATAAGCCGAGCAGCAAGCTGGACTCCCGGACCGACACGTGCCTGGCTAGCTGTGTGGAGCGCTTCATTGACGCCACCCTCACCATCACAAACCGCTTTACTCATATGGCGCAGAAAGGGGGCATGCATTGACTTAgcagggagaagaggaagagaaggggtATGCATTGATTCATTAATTCAGTCACTGAGCCAGACTCAACACTTCAGGGACAAGATCAAAGGACCTGTGCAACGATTATCATCTTGTTCAATGACTATGCTgatccatttttatttttattacgtTTATTTGGCAGGGACAATGCACAACAAAAACATAAGTCTCATAGCACTGAGAAATGATGTCGCACCAGATTTAGCTAATAGCTACTTTCCATCTGTAGTCCCTAGGCAGGTGAACATGGACACATCATACACAAAACAGGCAACATAAATACATCAGACATGTAAAAAACAAATAGATGAGGACATAGATACCTTTTTAACACGTAGGTCAACACATTGCACATAAACATGTTGCTGTTGGATAAAAATTGTTATCTGTAATGATGCAGGCCTTTTGACTGTGCATCATGTTATGGAGTTCTAATGTGGGATCTTTAATGGTATTCATTGCTCTGCTTTGAACATTTCAATAAAAGGAATAGCCTGAAGAGCAATGAGCCAGATGGGAAATTCTTTATTTTAAGGCAACATCTCTCTGTGAATTTATAGGGTGAGCTCATTTTGCATTGCCCAGTCCCCTGGCTGTGGCCTGGGTGAGTGGAGTAAGCACTTGATGTCTGAAGCAGagcccttctgtctctctctgtatgtgtaggccatctatctgatgctgtctgttcAAAAATAGTATGACATTGTGGCCACCCGTAGCATTGAATACAAGAAAAGCCAGCGAGCGTTTGGCTTCcattgattaaaaaatatatatataaaataatagccaatcagtgttgagctaaactgagtgaacccaactgtgaatggtcctggtgcaccaaaaAGAAAAATGTAAAGGGAAGCCAgattggatttggcttcactccaaACACATCAAATTGACATCAAATATGTCATTGACtaaaacaacttgaattgttgcatctcgttgtgttgtcttCTGGTGGCTCGCTAGCTAAAATGATTCttctttcctaaattagccatgatTGGCGATAGGCATTAGTGGTTTTACTtcattctccgtactggccagtGACTATAACGGCGATTCTGATCccaccataaattcatacattgtacCCCCGGCCTGAgtggatggaagttcaatatttAGCCaaatgtagaaggctaatgttaactggctaacgttgcccatgaaaggaagttaggctatcGAGCAagaattttagccaggtagcataggacaacaaaaaaagtgtactgtatgacagaatCATAGACTGTTTTGTCAACATGAACGAAAGGATAGTGGTATTgacgtttctctacaagtagggtgagtcaacatgtttttttctacttgcatgaatgcacacacacagacacacatcagaACCATAGAAAGACACGTATTTAGCTTAAGTTGGTTGGCCTAAATTGTTTTTgttatcttttagttgtcactgtgttagactaagcataggtgatttgatgatgttgaaatggtgctggaatagtggaggcagctcctgttttctttgctacttgcagtaactctccgtggttctaaatcatTAGTTGTcccaaaatgtcagaaacattaacttgcttgaccatgctgtaggtcatgtaacgcTTACGCAGTTTGGAGTCCACGGGGGTGCAAAATGAGTGCGCCCATGAGATGAGAAAGAAAACTAGGGAATGGTCAACATGTACTTCTTCACCCTACAATCTAAAGGGTGATGACGGGTAGGAATGAAATTAAAACTGAGTAAGAACATGGTTGAGTAGGCCCTTTATTCGTGGGGATTTAAAAGGACAGAAGGCAGCAGTTGTGCATGTATTGTGGAATACATTTGACTAGCTTATGATAATTGAAAGTTTTTGTTGTTGGAACGATTACATAGTTTATTGAAGAATAAATAGGCTTTATTGGCTGGCTACGTGCATGACATGCCGAAGGGTGTGTGTCACTTTAAGAACTTGAATGGAAAATAAAAGAAGGGTTTGTATAACGACATACTAGAGAATCAAAAGTGAAAGTAAAGTGATCCTATGCGTTGCAAAAGCCTCGACTTTATATTTGACTACTTTCAACAGATACCGACTATGGAACTAGAAGAGATCACTTTTTCTGGCTGGACTGCAATTGAGGAGAAGAATCTCCATGCAGGCGAGAAGCCAAAAGACGAGAAAGTTTACACCATGTACCATGGCACGTTTCTCAAGTATGTCCAGCATATTATCACCAGTGGGTTCCAACGCTCCAGGGATGGAATGTTGGGATCGGGGGTCTACGTGAGCCGTAATATCGACAAAGCAAAGTGTTACCCGCTGAATGCTGACAAGAAGGAAGCGGTAGTGTTGAAGTTAAAGGTGCGGGTTGGCAAGGTGAAGAAGATCGACATTGATAACCATCCGCTTCAGAAGTCATGGCACCAGAATGGTTACGACAGTTGCTGGGTGCCACCAAACTGTGGCTTTACCGCTATTAAATCTGGCCGTGAAGAGGATTGCGTCTGGGATCCCGCCCGGATTGTGGTGGTGGATGTGGCCTGCTGTCTGGACGATAAAACGCGCTGGGACCTCCGAAAGCAAATACGCGGCATGAATAACCATGGCGCAAAAGACGGGTGCAGCCAGTGCCACCAGAATACCTCAAACACTGGGTCTCACCCTATCCAAAGCTGTTGGACATGCACCAAACAGATTTGCCCCTTTCAGAAGAAGCATGTGTGCAACAAGTAACTACTTGCACAAACAACTAGTCCTACTTTGCGTGGCCTGTCTCGCTTTTGACCCATCACCCAATGTGACCTTGCATACCATTTCAAATTAAGCTTGATGTCATGTTTTAATGTATTTTGTGTAATCATTGCAACCCAATTGTATTGGGATCGAATTTGTTAacggacttgcctggttaaataaaggttcaattgtAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916086 lncRNA upstream 56069 41965541 ~ 41965763 (+) True G805065
TU915959 lncRNA upstream 227752 41793862 ~ 41794080 (+) True G804948
TU915862 lncRNA upstream 239991 41780833 ~ 41781841 (+) True G804855
TU915833 lncRNA upstream 274634 41746910 ~ 41747198 (+) True G804829
TU915800 lncRNA upstream 309825 41711527 ~ 41712007 (+) True G804798
TU916105 lncRNA downstream 9128 42035239 ~ 42035447 (+) True G805081
TU916107 lncRNA downstream 10976 42037087 ~ 42037287 (+) True G805083
TU916340 lncRNA downstream 62627 42088738 ~ 42088942 (+) True G805303
TU916349 lncRNA downstream 74339 42100450 ~ 42101445 (+) True G805312
TU916350 lncRNA downstream 78122 42104233 ~ 42104622 (+) True G805313
XM_021615724.2 mRNA upstream 20464 41967738 ~ 42001368 (+) False LOC110532106
XM_021615730.2 mRNA downstream 15607 42041718 ~ 42060595 (+) True LOC110532112
XM_036988033.1 mRNA downstream 39073 42065184 ~ 42073676 (+) False LOC110531180
XM_036988032.1 mRNA downstream 42772 42068883 ~ 42074342 (+) True LOC110531180
XM_021615735.2 mRNA downstream 68077 42094188 ~ 42099949 (+) False LOC110532118
XM_021615736.2 mRNA downstream 68377 42094488 ~ 42099949 (+) True LOC110532118
TU914750 other upstream 586409 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1000330 41020936 ~ 41021502 (+) True G803728
TU914302 other upstream 1553830 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 1571893 40442896 ~ 40449939 (+) True G803437
TU914248 other upstream 1632780 40386765 ~ 40389052 (+) True LOC110532068
TU916494 other downstream 305982 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 320065 42346176 ~ 42348786 (+) True G805600
TU919016 other downstream 2169604 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 2416551 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 4108620 46134731 ~ 46135732 (+) True G809685

Expression Profile