RNA id: XM_021615730.2


Basic Information

Item Value
RNA id XM_021615730.2
length 3600
RNA type mRNA
GC content 0.53
exon number 12
gene id LOC110532112
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42041718 ~ 42060595 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATGAATTTTAAAATGATATCATCTGAAAGAAATCCCCAATGTCCTCTAAGGTATACGGATATTTGATTGAGGTGTGTATTGATTTTCTATTACTTGCTTTTTAACTCAGGTCTCAGCACTGAGGGGAATGCCTCCACCAGAGGGTTCtggtcctaaccctaaccactgggCCCTCTCAGAGTTACTGGGACAGAGGAGGCTtgtggtgttgggggtgctagtaGCATGGATGGTCCTCTTCCACCTCCTGGTGAACGTGTGGCTCCTCTGTCTCTTCACCAGCCTGCTGGTGGtcctgggtggctggctggggtCCCGTGCTGCCCTGGATGCCAACAGCCTGCTACACCTGGAGCACTTTGTTCCCCTGGGTAGATCACAGCCGGCCCTCCACTCGCCTGAGAGCGAATGGAGGCTGGACCACGAGATCCAAAGCGCTGTGCATAAAGCCATCCGAGACTTTGTGTCGTCCTGGTACCACACCATGCTGACCGAGGAGGAGGGGCTGGGGGAGTTTGAGCACATTATGCGGGACGCCATGTTGGATTCAGTGATGGAGCTGAAGGAGAGGGCTCGGTGCGTGGACAGGAGAGCGCTGGTCCAGAGGACCTTGGAGCTGTGTGGCTGCCACCTGCAGAGCTACATGACAGCCAGGGAGATGATGAAGCAGGCAGAGGCACGGCTGGGGATGCAGGACAGAGACAGCTCCAGCACCCCCAGCCTGTGGGAGCTCTATAGCCAGGCAGATGCCCCCCACCCAGCTCTGGCTAGTCCAGCCACGGAGCTCAGCTATTCCCGGGCCGTAGTGGACCTCCTAATGCAAGTCCTGGTCCCGTTCCCTCACCTGGAGACCAGGACAGGGAGATACATGGTGGGGGAGTTGATCACCTGTAACGTCCTCCTCCCACTGGTCAGTAGGGTGTCCGATCCTGACTGGCTCAACCTTACCATTGTGGACTTGTTCACCAAAGCCAAAGAATCACCGGATGAGTCCCTCGATGAGCTCCCTGATACTCCAGTCCAGCTGCACAGGAGTCAGACCCAGCAGGAGCTCTGGACCCAGACCCGTTCTACCTCCTGGCTCCAGACTCCGAGAGACCAGAACGAGTCCAGCAACAGCCCCACTCCTCCCAAGCCAGCCACTCCAGACTCCCTGGAATCCATGGAGTCCTACCATACGGCAGTGCCAGATCTGAAGGAGGAAACACGGCAGTACTGCGGGGCGATCCTACCAATGCCATGCATTGGTTCATCGATCAAAATAAACACTTGTCATGTGTCTATGGATCTGCTGAGGTCCTGCAGCGGTGGCAGCCGCCTGTATCAGGTTGTGGACTCGGACCTGGAGTCCCCATCGACAGAATCCAATCAGCTCTCTGTGGAGTCCCTAGACCAGATGGACTCCGAggaggaccagacagacagcttctGTGACTGTACCTCCCCTACCAACTTCTGCAGTGTGTTTGAAGACGAGCCGCCTGGATGCTTCGGCAACTTGAAGGTCCTGGGACCcaagGTGTCCGAGCAGCCCCACTGGCCAGCGGGCATGGCGGAGGAGCTGCCCCCAGGCTGCCCTGTCCCTCCAGGGAGGCTGTGTCTGACCCCCTTCAGCTTCGAACCCCTCAGCAGTCCAGATGGACCAGTCCTTATCCAGAACCTGAGAATCACTGGTGCTGTGACAGCCAAGGAGCACCGCAGCACCGGCTCACACCCCTATACTCTATACACCGTAAAGTATGAGACAGTGGTTGACTCGGAGAGCCTAGGTACTCTACAACCTGTAGCCTATCACACTGTGAACCGGCGCTACAGCGAGTTCCTCCACCTGCAGACGCGCCTGGAGGAGAAGCCTGACCTCAGGAAGATGATTAAGAATGTCAAGGGACCCAAGAAGATTTTCCCCGATCTTCCGTTTGGGAACCCAGATATTGACAAGGTGGAAGTTCGAAAAGGACAGCTGGATACCTTTCTTAAACAACTGTGTACCATCCCTGAGACGGCCAACAGCGACGAGATGCAGGAGTTCCTGGCTCTTCACACAGACGCCAGCACAGCCTTCGAGAAGAAACCATTTGTTATGTCCAGGATTGACAAGATGATGGCGAATGCTGTAGACACTCTGAAGACAGCATTCCCTCGTGCTGAGGACGACCTGGATGGAGAGCCTGCTGATGCGAGGAATGCCCCagaaggaaggaagagGTCTGTCCGGCTGAGGTTCTCCAGTAAAGTCGCCCCTACTCTCAATATACCTGAAATCCAGCCCAAAGTCATATACTGCTTCAATGAAGGGAGCACTGTGTTCCATGGCCTGTCCCTGTCTGGTCTGGAGGGCTTTATAAAGGACCAGGAGGCTCTGCTCTATGCTCCCCAGGAGAAGGAGGCTGACGGGAGGAGGTTCAGCGTGCTACCTGGCAAAGACAGGAAGGGTGGTGGGGGTCGGGAGAGAAAACTACGGGGGACAGACACGGCCGTGGCAGACGTAGCTCTGAACATCCTGTGTCTGCTGATGAAGGACCAGTGGAGCTGGCTCTGCACTGAGAACATACagaagaccatcagactgctgtttGGCACCTTCATTGAGAGGTGGCTGGATGTGGGCATGGCCCACCTGACCAGTGCTCCCTGCTGGGTGATCTACCTCCAGGTGATGCAGGAGGCAGTGTGGCCCGGGGGTGTCCTCCCTGATGGGCCTCGTCCTGACCGCAGCCTCATCCAGAGAGAAGAGACCAGGCAACAGTGTTTGCACTGCCTTACACAACTACTACCAGacctgATTGCTGACATGCTGGGTTCTGAGAAGTACAGAGTGAGCTGGGATATGGCACTGGCGTCTCTGCAGGACCCTAACATCAACCGGCACctgatctactgtatctgtgacctGCTGTTGGAGTTCCTGATTCCAGAGTCTTCAGAGGAGGGCTTTCAGAGATCTCTACTACACAGTCTCTTTGGGGACGAAGAGAGGCTTTCTGCTTCAGCTtgacaacacaccaacacaccacccctctctctgcgCCCCTGTCACTATCCCTATCTATTACCCTCTACCCCCTCCCATCCTGGCTGGCTCATCAGTATGGTAACCGTGGTCCTGCTGGGTTAATCAGAATGGGACCAGAGATTTACTGGAGCTTCTCATGAGGTCAGAGAAGAAAGGTGAGGAGCGcagagaaggggggaggagggggaggaggaaaagggTTGGGGAGATAGGAGGGGTGGGAAGGCTGGGAAATGGGCTCTTGAACTCCTTACACTTTTTAGGCAACGCTCTAAAATGACTGATGACACTTTATTGAATGTATTCTCAAGGCACTGTGTTGGTGATTGTGCTAATATTGTGTTTTAATTAGATGCTTGTGTAGAGAAACACATTTATGtagatatgtatgtacagtatatgcagtaATTATtttatgtgtttatttatttatatgtaaaATGCAGTATGTGTGATATCAatagatatacagtggggtctgaaattattTGACCCCCTTGATAATGATGAGCAaaaatgactatataaaataaatcaaatactgagctactgtatattttatgcaaataaataattgggaaatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916107 lncRNA upstream 4431 42037087 ~ 42037287 (+) True G805083
TU916105 lncRNA upstream 6271 42035239 ~ 42035447 (+) True G805081
TU916086 lncRNA upstream 75955 41965541 ~ 41965763 (+) True G805065
TU915959 lncRNA upstream 247638 41793862 ~ 41794080 (+) True G804948
TU915862 lncRNA upstream 259877 41780833 ~ 41781841 (+) True G804855
TU916340 lncRNA downstream 28143 42088738 ~ 42088942 (+) True G805303
TU916349 lncRNA downstream 39855 42100450 ~ 42101445 (+) True G805312
TU916350 lncRNA downstream 43638 42104233 ~ 42104622 (+) True G805313
TU916351 lncRNA downstream 44229 42104824 ~ 42106636 (+) True G805314
TU916354 lncRNA downstream 47229 42107824 ~ 42113947 (+) True G805315
XR_005053249.1 mRNA upstream 14647 42021496 ~ 42027071 (+) False LOC110532114
XM_036988029.1 mRNA upstream 15603 42021497 ~ 42026115 (+) False LOC110532114
XM_036988028.1 mRNA upstream 15603 42022546 ~ 42026115 (+) False LOC110532114
XM_021615731.2 mRNA upstream 15603 42024982 ~ 42026115 (+) False LOC110532114
XR_005053250.1 mRNA upstream 15607 42021832 ~ 42026111 (+) False LOC110532114
XM_036988033.1 mRNA downstream 4589 42065184 ~ 42073676 (+) False LOC110531180
XM_036988032.1 mRNA downstream 8288 42068883 ~ 42074342 (+) True LOC110531180
XM_021615735.2 mRNA downstream 33593 42094188 ~ 42099949 (+) False LOC110532118
XM_021615736.2 mRNA downstream 33893 42094488 ~ 42099949 (+) True LOC110532118
XM_021615739.2 mRNA downstream 57796 42118391 ~ 42124869 (+) True LOC110532121
TU916102 other upstream 17315 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 606295 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1020216 41020936 ~ 41021502 (+) True G803728
TU914302 other upstream 1573716 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 1591779 40442896 ~ 40449939 (+) True G803437
TU916494 other downstream 271498 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 285581 42346176 ~ 42348786 (+) True G805600
TU919016 other downstream 2135120 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 2382067 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 4074136 46134731 ~ 46135732 (+) True G809685

Expression Profile