RNA id: XM_021615739.2


Basic Information

Item Value
RNA id XM_021615739.2
length 1541
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC110532121
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42118391 ~ 42124869 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGAACTCTGATTCAGTGATTGTATCGACTCAATCAGCGATTGATTTAACAGGCCCGAAATGTAACGCACGCGCAAACCTAGTTCTTCCTTTCTGCTAAATTCTTCGCCATGGCTCCTGTGAAGAAACAGAGCAACAAAGGCTCCAAGGGTGGCAAGAAGAAGAAGCAGGTCCTGAAGTTCACTCTTGACTGCACCCACCCTGTTGAAGATGGCATCATGGATGCTGCCAACTTTGAGCAGTTCCTTCAGGAGCGCATCAAGGTGAACGGGAAAGCTGGCAACctgggtggtggtgtggtgtctATTGAGAGGAGCAAGAGCAAGATCACTGTGTCCTCTGAGGTCCCCTTCTCCAAAAGATATCTGAAATATCTGACCAAGAAGTACTTGAAGAAGAACAACCTTCGCGACTGGCTGCGTGTTGTGGCCAACACAAAGGAGAGCTACGAGCTACGCTACTTCCAGATCAaccaggatgaggaggaggaagaggatgaggattAAACATTGTCTGCTGGATTTTGTACATTCAATAAATTCTTAGAGTActcctgttttttattttttctctACGGTGACAAGACATGGAGCGGGTGGTATATTTACTAGGACACAAAAGGTCTAAaacagggagggacctacctgaatttgtccaacaaGAAACACATTTTCATTGCAAAAAGTTTTGCTGCGGTGTGCACTCCTGAATACACACTGTGGGTGACGATCACTCAACCTTCTTGTGACAATGCAGTACAGTGCCtagagaaagtattcagacccctggacttattccacatcttgttacatcctgaattcaaaatttattaaatatactttctcacccatatacacacattacaccaTAAGGactaagtgaaaacatgtttttagaaatttttgcaaatatattgaaaAAGGAAtagctcatttacataagtattcacacccctgagtcaaaacTTTGTAGAAGTCTTTCTGGctaagctttccacacctgggttgtgacatttgcccattattctttaaactCATCCAGCTCTGTCAAATTAGCAGAGCATTGCTAGACCATTTTTAGGACTTGTCATAGatttaagcagatttaagtcaataaCTCGGCCACTTGAACATCACTGTTTTCTTGGTAAATTACTAGTGTAGATTTAGgcttttgtcctgctgaaaggtgaattcaacttctagaaagcagacaaccaggtttcctctaggatttttcttGTGCTTAGCTTCTATGTttcatttttttatcctgaaaaactccagtGCTTAATgactacaagcatacccataacatgatgcagccaccactatgcttgaaaatatggagagtggtactctaaAGTGCAGttttggatttgccacaaacataagtTTGTATTCAGGACAGTATTTAGTGCCTTGATGgaatattctgtacaggcttccttttcacccTGCCaactaggttagtattgtgaagtaacaatgttgatccatcctccattatctcccatcacagccattaaacagctctaaaatca

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02891 RP-L22e, RPL22; large subunit ribosomal protein L22e

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916354 lncRNA upstream 4444 42107824 ~ 42113947 (+) True G805315
TU916351 lncRNA upstream 11755 42104824 ~ 42106636 (+) True G805314
TU916350 lncRNA upstream 13769 42104233 ~ 42104622 (+) True G805313
TU916349 lncRNA upstream 16946 42100450 ~ 42101445 (+) True G805312
TU916340 lncRNA upstream 29449 42088738 ~ 42088942 (+) True G805303
TU916363 lncRNA downstream 2146 42127015 ~ 42127526 (+) True G805324
TU916375 lncRNA downstream 16568 42141437 ~ 42141873 (+) True G805336
TU916378 lncRNA downstream 20753 42145622 ~ 42145917 (+) True G805339
TU916379 lncRNA downstream 21599 42146468 ~ 42146675 (+) True G805340
TU916383 lncRNA downstream 26426 42151295 ~ 42151539 (+) True G805344
XM_021615735.2 mRNA upstream 18442 42094188 ~ 42099949 (+) False LOC110532118
XM_021615736.2 mRNA upstream 18442 42094488 ~ 42099949 (+) True LOC110532118
XM_036988032.1 mRNA upstream 44049 42068883 ~ 42074342 (+) True LOC110531180
XM_036988033.1 mRNA upstream 44715 42065184 ~ 42073676 (+) False LOC110531180
XM_021615730.2 mRNA upstream 57796 42041718 ~ 42060595 (+) True LOC110532112
XR_005053251.1 mRNA downstream 35543 42160412 ~ 42179321 (+) False LOC118966050
XR_005053252.1 mRNA downstream 49979 42174848 ~ 42179321 (+) True LOC118966050
XM_021615741.2 mRNA downstream 84966 42209835 ~ 42236639 (+) False LOC110532122
XM_021615740.2 mRNA downstream 84968 42209837 ~ 42236639 (+) True LOC110532122
XM_021615744.2 mRNA downstream 112475 42237344 ~ 42246426 (+) True LOC110532123
TU916102 other upstream 93988 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 682968 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1096889 41020936 ~ 41021502 (+) True G803728
TU914302 other upstream 1650389 40467628 ~ 40468002 (+) True G803457
TU914281 other upstream 1668452 40442896 ~ 40449939 (+) True G803437
TU916494 other downstream 207224 42332093 ~ 42332438 (+) True G805451
TU916660 other downstream 221307 42346176 ~ 42348786 (+) True G805600
TU919016 other downstream 2070846 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 2317793 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 4009862 46134731 ~ 46135732 (+) True G809685

Expression Profile