RNA id: XM_036988034.1


Basic Information

Item Value
RNA id XM_036988034.1
length 2699
RNA type mRNA
GC content 0.49
exon number 10
gene id LOC110532119
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42125255 ~ 42141613 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

catcctctgttgcaacactcacaactgagttccaaacagcctctggaagcaaagtcagcacaagaactgttcgtcgggagcttcgtgaaatgggtttccatggccgagcagccgctcacaagcctaagatcaccaagtCAGGCCTTCAAGCAGTGACTGTCGCTGACGATATCAAGGAAAAAGTAAAACTTGACTTACCTAAAGTCAAAGGTCAACTACTCATTTTCGGCGCCACCAACTGGGATCTCATCGGAAGGAAAGAGGTGCCAAAAGCACAAGCCTTCAGGAACCTAGGCCAGAACTTGTGGGGTCCTCACCGCTACGGCAGCATGAGTGACGTGCAGGTCAGCAGTGTGGTGTCTGGGCCCTGTGCTGCCCACAGCCTCCTAATCACCACTGAGGGCAAGCTCTGGAGCTGGGGTCGAAATGAAAAGGGTCAGCTGGGTCACGGGGACACCAAACGCCTGGAGGCCCCAAAACTGATTGAGGCCCTCGCAGACGAAGTGGTGGTGGCTGCAGCCTGTGGTCGCAACCACACCCTGGCATTGACCGAGGGTGGCACCGCCTACTCGTTTGGAGAGAACAAACTGGGCCAGCTGGGCCAGGGCAACCAAACAGATGCAGTCCTCAGTCCAGCCCTGATCCAGTACAATGGGCAGCCCTTGGTCAAGGTGGCGTGTGGGGCAGAGTTCAGCATGGTGGTGGACTGCAAAGGAAACCTCTTCTCGTTCGGTTGCCCAGAGTATGGCCAGCTAGGACACAACTCTGACGGCAAGTTCATTGCCCGCGCCCAGCGCATCGAGTTTGACTGTGAGACCATTGCACGCCGCGTGGCCATCTTCATCGAGAAGAGTAAGGACAGCCAGGTGACGCCTGTACCTAACGTGGTGGTCCGAGACGTCGCCTGCGGAGGCAATCACACGCTGATATTGGACTCCCAGAAGCGGGTGTTTTCCTGGGGCTTTGGTGGTTATGGACGGCTGGGTCACACGGAGCAGAAGGACGAGATGGTGCCCAGACTGGTGAAGCTCTTCGACTTCCCCGGGCGCGGGGCTTCCCAAATCTACACTGGCTATCAGTGCTCCTTCGCTGTAAATGAGATGGGAGGGCTGTTTTTCTGGGGGGTCACCAATACCTCGCGTGAGTCTACCATGTACCCCAAGGCTGTTCAGGACCTGTGTGGCTGGAAGGTCCGCAGTCTGGCGTGCGGGAAAAGCAGTATAGTTATCGCTGCAGACGACAGCACCATCAGCTGGGGACCCTCCCCCACCTTTGGAGAACTGGGATACGGAGACAACAAGGCCAAGTCCTCCACTACTGCTCAGGAGGTGAAGACCCTGGATGGAGTTTACACTGAACAGGTGGTGATGGGATACGCACACTGCCTGGTCATCGCCAGACAGGATACTCCACAGGAACAAGAGATGCTCAAGAAGCTGCCAGAGTACAACCCACGCACGCTCTGATGGGGCACCATCCAGCCACCTTACCATTTGTCAACAGATTCTCTCCAGAATGCATCTCCCCTTTAGGTCACCTTTGTAAGGCTTGATGGATGGCTGGGGAGGGTGGGCTCTTGTATGTATGCGAACACAAACAAGTCAGTTCTTTTTGTGTTTGTTCCCAAAGACCAATTACATTTTCTTTGTTCATGAAGTCCATGGCAGTATTACTTTTTGTCAGGTCGATCTGTATGCATTGTCAGAACACAATCGGGATCTGAGACATTGTGCCATCAAGTTGATGCTCTCCGGCCATTGACTTCTGTTAACATTCTTTGGTTAATCTCTTCACTTGTACGATTAAATGTTGGTGCCAAGGATGTGCAACTGTCTCTCAGGCCAGTATCTGCTTGTCATTCCAGACTTTTTTCACCTCAGTGACTCCTTTTAGCCTGGGAATCCAGGTGTGGGCACTGCAATCTTGGCAATGAGAATGTGGTTTTGCGACTCTCTTTTAGTCCAAATGGTTAACAGGGTGTGGTTATCCTAGTTTTAAATCAAGACTGgttgtttttcttaatttgttttggtcAAAGGCCCGCATGTTTTTTACATTTCAAACGTGGAAATGGTAAAGGTTAATTAAATTGTTTGATTTTGTTCAGTCTGTTCTGACATTGCCTCTCTCCTGCCCCAAGAGGGGTTAAAAGCTTTTGTTGGCCAGTACATCTTGTCATCACTGCTGTAAACAGCCTGGTTTTGACCACTGTATGTAGCAGTTAGTATGCATCCATCTGCTGACCAATCATCCACCGTAATTTGGGTGAGCTAGGAGTAGATGACTGGGATCGTACAGATGGGCAAGTTTCTTGTACATACCGATGACGTGCACTCTATGGGTTGATTTCGGGCCACACTTCTAGCATCAATCTGATTTAACCAATTCTGACAAGCAAATTTCCCCATTTACCAATGAGCATATCACACCTTACACAGGTTCTGAGCTGCCAAATACTTGAGATTCATTTACAGATGGTTATGCTGGATTAACATTGTGGAAGGTTGACTGTTTTGTCTGCATTTTGGGAGTTATGGCTAGCTGAAtctagtgccttcagaaagtattcattcctgttcacagttgtttcagcctgaatgtaaaatgtactacattgttttttttacactTGTATacaaacaccccataatgtcagaaTTGTTTAAATTTGTACCAATTAaatagctgaaatgtcttga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916511 lncRNA downstream 90 42118515 ~ 42125165 (-) True G805467
TU916507 lncRNA downstream 7503 42117505 ~ 42117752 (-) True G805464
TU916501 lncRNA downstream 21272 42102953 ~ 42103983 (-) True rnf207b
TU916499 lncRNA downstream 25310 42098318 ~ 42099945 (-) False rnf207b
TU916293 lncRNA downstream 85712 42039116 ~ 42039543 (-) True G805256
TU916525 lncRNA upstream 2924 42144537 ~ 42144786 (-) True G805481
TU916526 lncRNA upstream 3465 42145078 ~ 42145395 (-) True G805482
TU916527 lncRNA upstream 4287 42145900 ~ 42146216 (-) True G805483
TU916531 lncRNA upstream 8190 42149803 ~ 42150002 (-) True G805487
TU916594 lncRNA upstream 95277 42236890 ~ 42237230 (-) True G805538
XM_021615734.2 mRNA downstream 10890 42098270 ~ 42114365 (-) False rnf207b
XM_021617144.2 mRNA downstream 37953 42085331 ~ 42087302 (-) True LOC110533012
XM_021615733.1 mRNA downstream 48406 42075577 ~ 42076849 (-) True LOC110532116
XR_002474807.2 mRNA downstream 130744 41992351 ~ 41994511 (-) True LOC110532109
XR_002474808.2 mRNA downstream 156302 41955175 ~ 41968953 (-) True LOC110532110
XM_021615738.2 mRNA upstream 13472 42155085 ~ 42160574 (-) True LOC110532120
XM_036988039.1 mRNA upstream 121625 42263238 ~ 42289818 (-) False LOC110532125
XM_036988036.1 mRNA upstream 122758 42264371 ~ 42289818 (-) False LOC110532125
XM_036988038.1 mRNA upstream 123276 42264889 ~ 42289818 (-) True LOC110532125
XR_005053253.1 mRNA upstream 156338 42297951 ~ 42299962 (-) True LOC118966051
TU915509 other downstream 687284 41437030 ~ 41437971 (-) False G804543
TU915510 other downstream 687448 41437030 ~ 41437807 (-) True G804543
TU915182 other downstream 1140010 40984482 ~ 40985245 (-) True G804255
TU915184 other downstream 1209281 40908595 ~ 40915974 (-) True wdr6
TU915238 other downstream 1212897 40862589 ~ 40912358 (-) True G804307
TU917956 other upstream 1190317 43331930 ~ 43332703 (-) False G806724
TU918772 other upstream 1798953 43940566 ~ 44015456 (-) True prdm16
TU919246 other upstream 2107185 44248798 ~ 44292112 (-) False tafa5l
TU919254 other upstream 2107185 44248798 ~ 44292077 (-) True tafa5l
TU919312 other upstream 2219803 44361416 ~ 44362166 (-) True G807941

Expression Profile