RNA id: XR_002474810.2



Basic Information


Item Value
RNA id XR_002474810.2
length 1068
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110532135
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42563408 ~ 42565334 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gtACATATTTGTATGTTGACATTTGCCTGTGAAAAAAGGTGAATAACGATGAACCAGCTGAGTCATCCCAACATCCTCCAGCTCTACGAGGTCTTTGAGGCCAAGCACCAGCTGGTGTTAATTCTGGAATATGTTGAGGGTGGAGAGCTGTTTGAAAGGATCGTGGATGAGAGTGCACTGCTGACCGAGGTGGATGCCATGGTGTTTGCCAAGCGGATCTGTGAAAGGGTCAGCTACATGCATCAGTTGTACGTCCTCCACCTCGACCTGAAAGTGAGTATGGTGGACTCGATATGCATCGTCTCAAACCAGATTTTAAGGCCCACCACCAACTGTCACAAATGACAAGACACATTTTAATCACCACTTGAAGCACTGCGTGGTCACTCACCATGAATCAAAGAGGCACTCATGCATGTGTCGGTGTCATGAAAAGTAATCAATGGTTCTTTTATCCACTCCAATGTTTACAACCGGAGAATATCCTTTGTGTGAATCACACTGGCCATCAGGTGAAGATTATCGACTTTGGGCTGGTCAGAAGAGGACGAATAAGTGCTGCACAGTGTCTAAGACGCCCGTGGCGCAACAACATTGCAGAGAAGGCTAAGGGCAGCAATATAGTACTGAAGTCCCAGGTCCTACTGAAGAAATACCTGGCGAAGAGACTATGGAAGATCATCAGTTCAACAGATTTCCTACACCACACATGGTACTCTGGTTCATTTTGTGGTTAGAAGATATATTGTTTACATTACAGCAGTTTTATCATCTTTGCACTGCAATCAACTTCATGTAAATTGATTCGGGTCTACCAGTTGATGAGATGCAACGAAGCTTCCTGCCTTGCTCACTGTATGTTGTAAATGTGCTTCTGACCTCTTCCGTTGGACTGCATTCCTGTAAAGACTTCCCTCACAATCAGTCAGAAGATCCTCATCTTGGTCTGTCTGTGTAAAATAAACTGGTGTGTGATTAAATAGTGGCTACGCTACATCATTTGACTCGTAAAATGTACATAAATGTTCTTTAATATTTGTACCTTTTCGTGTGGAAATGTATGGAAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU916764 lncRNA upstream 28538 42532382 ~ 42534870 (+) False G805694
TU916767 lncRNA upstream 43896 42496861 ~ 42519512 (+) True glut1b
TU916742 lncRNA upstream 105576 42457630 ~ 42457832 (+) True G805673
TU916705 lncRNA upstream 161777 42401314 ~ 42401631 (+) True G805640
TU916703 lncRNA upstream 164553 42398645 ~ 42398855 (+) True G805638
TU916827 lncRNA downstream 49526 42614860 ~ 42615200 (+) True G805749
TU916858 lncRNA downstream 96481 42661815 ~ 42664451 (+) True G805779
TU916860 lncRNA downstream 100435 42665769 ~ 42665983 (+) True G805781
TU916865 lncRNA downstream 112202 42677536 ~ 42677836 (+) True G805786
TU916867 lncRNA downstream 113810 42679144 ~ 42679349 (+) True G805788
XM_021615760.2 mRNA upstream 6915 42546845 ~ 42556493 (+) False tpx2
XM_021615759.2 mRNA upstream 6915 42546846 ~ 42556493 (+) True tpx2
XM_021615761.2 mRNA upstream 16877 42541021 ~ 42546531 (+) True trappc6b
XM_021617145.2 mRNA upstream 34360 42517146 ~ 42529048 (+) False glut1b
XM_021615752.2 mRNA upstream 132355 42425082 ~ 42431053 (+) True LOC110532129
XM_036988051.1 mRNA downstream 6478 42571812 ~ 42596697 (+) False LOC110532136
XM_036988052.1 mRNA downstream 6478 42571812 ~ 42596697 (+) False LOC110532136
XM_036988053.1 mRNA downstream 6479 42571813 ~ 42596697 (+) True LOC110532136
LOC110533013 mRNA downstream 86798 42652132 ~ 42689483 (+) True LOC110533013
XM_021615779.2 mRNA downstream 124959 42690293 ~ 42695335 (+) False LOC110532140
TU916660 other upstream 214622 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 230970 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 539005 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1127985 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1541906 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1630381 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1877328 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3569397 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5416667 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5980120 48545454 ~ 48570593 (+) True G812688

Expression Profile