RNA id: XM_036988051.1


Basic Information

Item Value
RNA id XM_036988051.1
length 5856
RNA type mRNA
GC content 0.60
exon number 12
gene id LOC110532136
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42571812 ~ 42596697 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTCCGTCATTTCCTTCCCACTAGCGTTGGTTTGTAGCAGAGTGGCTAcatagagagggggtggggagagttGTTTTGTGTTGCGTTCCTGCAGTGTGTTTGACCCTTAACCtcgttgttgtgttctctccgcCTTGCATTCCAAAGTGAGGTTTTCCTGCAGCAGATGTAGCTTCAACAGACGAGAGGCGCTCGTAGCTGCTAGGGTTCGCTCGTTACTGCGCTCCCCGTACGTGTTTACTAGATAGCTTCTCATGAGCCTTCTGTCACGTTACAGTGCACTAGACTAGAACAACAATAGTTTATATAAATGAATTAGCTCACCAAGGGACGTGCCTACCGAGCACAGGACGAGCGAGAAAACGAGCAACTGCGTGCTGGGAAGGCTAAGTTAGCGAAACGGAGAGAAACCGCTCAGCTAACGTAGCTTGCTAGTTCGGCGTTTCCTGACCCATTGAAGCTATCGCAACTGCTGCTGGAGGAGCAACTGAGAGAGGATAGCTAGCTACTAGAGGGAGGAAATGAAGGACAAACAGAAGAGAAAGAAGGAACGCACGTGGGCTGAGGCGGCTCGCATGGTTCTAGAGAACTTCTCTGATGCCCCCATGACGCCCAAGCAGATCCTGCATGTTATCCAGACCAAAGGACTCAAGGAAATGAGAAGTGGCACGGCCCCTCTGGCCTGTCTGGTGACCATGCTGCACTCCCAAGTGAGGGGGGACCGAGTAAAGAACAGCATCTTCTTCAAGCTTCCTGGCAGGATGAGTCTGTTCACTTTAAAGAAGAACGCTCTGCAGTGGACCAAGAGTTCGACAGAGGCGGAGACAGCGGACACCACCACACAGGCTACCGCTTCCACTGCAACAGCAGGGCCAACGGAAGGGGGGGAGCAAGAGAGCTGTGACTCCATGGAAATGATTGCGGCCAGCGGAGAGAATGACGcgtcagTAGATGAGAGCTCATCCAGTGCGTCCTGCTCCACAGAGCCCCAGACCAGGCTGAGTAGGTCTGGAGTCTCTGGACAGGTGCGCTCCGAGGCCCAGGCGCAGACCCGACTAAGCCGATCCAGACAGTCGGGCAGACAGAGGAAGAAGGCTGTGATGATGCCACGCGTGGTCCTCACTCCACTCAAGGTCAATGGTGACCACGTCCCATCAGGAGCAGCGGGGAGGCGCAGGGAAGGCTCTAGGGGGGGTCCAGGCCCCACGCTCCGTGCCCGCCCTGAACTGGCTAGCTGGAAACGCCCCCAGCACTTCAAGAGCATTCGTGGCCACCACTCAGGGCCCATGAAGAGGAGCCGAGGTGGGGTGGAGGTGGACTTTGAGACGCCTGGCTCAATCCTGGTCAACACAAACATCAGGGCCCTCATCAACATGCGCACCTTCTCTGCCTTCCCAGCGCAGTACCAACAGCAACTCCTGCAGCTCCTCCCTGAAGTCGACCGCCAGGTGGGACCTGACGGTCTGGCTCGCCTCAGTAACTCGGCTCTCAACAATGAATTCTTCACTCACGCCTCCCAGAGCTGGAAGGAAAGGCTCGCTGAGGGGGAGTTCACTCACGAGATGCAGGTGCGATTTCGccaggagatggagaaagagaagaaagtgGAGGCATGGAAGGAGAAGTTCTTTGAGGAGTACCACGGTCAAAAGTCTGGCCTGACCCGGGAAGAGTCTCTGAAGTTGACAATGAGTGAAGAGGCCGATGCTGCCGCCAGCGCCCTGGAGAGTGAGGTGGCATCTGTGGCTGCAGGAACGCCCAAGCGCCGTGGTGTGGGCAGGAGGCGGCGGGACGGCAGGATGAGACGGCGAACGCGTGCAGACATGAGACGCAGGGCGCGGCGCACCCTCTGCAAGACCAACTCCCCCGCCATGCAGACCCCCGAGCAGCCGGAGGGCACACTCACTCTAGACGCTGTTGCCTCTGTCTCTGCGCCCTCGCCCGTCCCAGAGGCCACCATGGTGCAGGGAGAGGTGGTGCTACAGGCCGAATCTGGACTGGAGACCCCGGCCCAGTCTGCCTCCCTAGAGCCCACGCCCTGCCCTTCCCCTGTGCCCACGCTCCTGTCTGTGACCgtgcctgagcctgagcctgagcccaCCCCgacccccagccccagccctgcaTCCGTCAGTGCCATCGACGAGCCTGAAGTCACTGCCCGCCTGCTCCCCGAAGAGCTTGCACCCGCCATCGCCTcaacatctccctcctcctcgtcctcctcctcctcctcgtcctcctccccttcctcctctccctcctcaaccTCCGAGAGGCAGGGGGCGTTCACCGCCGGCTTGgactcttcttcctcttcctcctcctccacggccGCCGCCACCGCCGATCCACTAGACGATGGGGCCTCTGTGGTCACCTCGGTCACGGGGGGAACGGCCACCAGCAGCCAGGAGAGCAGCCCTGCAGCCAGCCCCACCCCCACTGCCGCCACCTCCACCCAGACCAAGGAGCAGAAGAGGAGGCCAGACGAGACCCAGGCCTTCTCCAGCTTCCCCGAGAAGAGGCCGCGAATAGAAGATCGTCAGTCCTTTCGTACCACAATCGACGGGGTCCACACGGAAAAGCCGCAGCCGACAGCAGAGGAGCCCAAGGTCCCACCTATCCGGatTCAACTCTCCAGAATCAAACCGCCCTGGGTCAAAGGGCCGCCAACCTACCAGATCTGTCCCCGCATTGTGCCCCCCGGTGAGGGCTTGCGGCGCACGGGGACGGGGGCGCGCACCCTGGCGGACATCAAAGCTCGCGCCCAGCAGGCCCGGGCCCAGCGCGAGGCCGCTGCTGCTGTTGCAGCCACTGGGGACGGGCCAGGGCCCGGCGGGGGCAGGGCTGGTTCTGGGCTACCGGATCGCAGCAGTGGAAGACGAACTCGAGAGCACCCAGGACCCGTCGAgcccggaggaggaggaggaggagcaggaggcgtGGAGGAGCAGGGATCGCCTGCGGGCTCTCATCCGCCTGGAACACAACTACAGCTGTCCAATGTAGAGccctcctctacccccaccccccacacagcTGCCTCATCcccctccctgtctacctcctccaacccctccctgtcctcttcaGAGCCCCCGCAGACCCCCACTCCACCCCTACCCACCCAGGAGGAGCGGCTGGGGGAGCTGAGTGGGGAGGAAGGGGCTACACTAACACCACCACCAGTCAAATGCACCACCAACGGACTCTCGGACAAGGCAGCGCTTCTGAAGCCTGAGACTGTGTCCAGCCACCTCCAAGGGCAAAGCGAGGGGGCCGACTGtgacaggacaacgacccaaagcggTCCCTTGGCACCCACCTCCATCCCAGATTCTCTGCCCAGGTTCGGGGCCCAGGGAGTGGATGTGATCAGGTCCCTGGCCGGCACCGAGCAGGccagggggggaggagggggtgtcaTCCAGCATGGTTCCCACCACGTGGGTCCACAGGAGAACCCCCCCACCCCGGCTAGAGAGGGCCGCATCCAGGGCGAAAGGCAGCAGTCGGAGCccctggggagggagagagagacagcctctctccctcgtctcccaCCCTCAGTCAGAGAGGACGACGCAGGGCATCACAGCGACTCCACGGAGACGGCCTCCGACTGTGAGAACGAGAGCCAGGAGGAGGAGCCCCACCTGAGCACATGGCGCCACCACCTGCCCGCTCAGCGCAACGGCAACATCCAGCACCTCCAAAGGCTGTCTCAGAAGGCCCATGGCCAGCCTGTGATCTGCAGTCCCCCTTCACAGCAGAACCAGCAGCCGGTCATCCAGGCCCATGTGTCCAACCAGCACGGCCAGACGGTCATCCAGCCCTGCTTCCCCAACGGCCTGCCCAGCCAGAGTCTCATGCAGCCGGGACAGAATCCGCAGCAGCCTGGACGCACTCCCCACCCAGACCAACAAGCTATCGCTGCGCCACACCCCAAAGCCCAGAGGGGGCACAAAACAGACGCCATCGAAGACTACAAAGCATCTAGCCGTTGCTTGGCTGATGAGGACTGTAGGCTGGGGCTGAATCCCTCTCCCACCGCTAGCTGCAAGAGGCTCCCTAGTTCTGCCCGGCCCGTGTCTACAGTGGAGGCCAACAACCCTCTGGTCACCCAGCTGCTCCAAGGCAGCCTCCCGCTGGAGAAAGTCCTGCCGCAGACGCACTCGGCTAGCAAGCTGGAGATCAACCGCCTGCCAGAGGGGCTTCAGTCAGGCCCCAAGTCCCAGCTCAGCCGGCAGCAGCAGACCAGGAACCCAGGCACTCGCTTCAGGGGCCCCCCAGAGTCCGGTACGATGGAGTCGCTGGTCCCCGAGTTGTCCTCTCAGAACCAGCAGAAGTCCCCTGCTGGCCGAGGAGGCTCCCCTGGAGCAGGCAGGAGCTTTGCGTCCTCTCCCCCAGGCACAGTACCCTCCCGCATGGCCTGCCTGCTGGAGGAGGCCTCCTCTCGGGCCACGGCCATGCAGCAGTATCTCTCCCAGCAGCCAGCTGGTGCCGTTCCCCCCGGGGCTGTGCCCGTCATTACATCCCTCTCTTCTTCGTCCTCTTCCTCCAGACGCAACTCCCAGGAGTCGGCCGTCATCAGAGAGTCTCCAGAGAGGCACCACAACTTCACCCAGCCGCGGGCCACCCCGGACGCCCCATCGCCCCCGCACAGCAACCTCGGCCTCTCTGACGTGGTCCCCACCGTCAAGATCAACTGGCACCCTTCCAAACCCCACCCCCCACACCAACAGCAGCTTTCGCCCGTGAAGAGCGAGGTCACCTCCCGGCCCTCTTGCCAAACTCTTGCCAAAACCTCTCCCTCTGGCCCCATGGCAGGTGGCGGGCCAGGTGTGGTGGTCACCAAAAAGGAGGCAGTGAACTCTATGGACGGTTACCTGACTGGAGGAGGTATAGGAGGAGGTGGGGCTATGGAGGGACTGCTGAACATGGAGATGTCCTTAGCCCGCATGGCTAAGAAGGAGGCGCAGAGCAAAGCTCAGtactcctcatcttcctcctcctccctccctttccagcTCTACGGAAAGCTGCCTAAGCAGGGTGGCGTGGCGTCACCCGGTTTCAGCTACACGGCCAACGTGTCTGTGGTGGACGGCAGCGGCTTCTCGAGGAGCATCGCTGACGGCGTCCTGCAGCTGCGTCAGCGCCACAGCGCTAGCCAGAGCGCCACACTCAGCATCCAGGCGTTCGCCGACAGCGCCGCTGAGGAAGTGGCCCTCAAGTGCTCGTGCCGCCTCAAGGCCATGATCATGTGCCAGGGCTGCGGGGCCTTCTGCCACGACGACTGCATCGGCCCCTCCAAACTGTGTGTCTCCTGTCTGGTGGTCAGATAGGAGCTTTCTCTGACGTTATCACGGTGTTGGTGGTTTGATGTTATATGCTGTGCCACCTTCAGCATACCTGCTCCATGTATAAACTGTTAACTAACCTAACACACCCCGAACTTGAGAGAAACAAGGGTGTGGGACTTCAGGCTTTGACATGTACATAACCCTTGGAAGTGTTGCCTTGTATTATAAAATCggtatgtatttttttgttgcataTTTTTTCTAATGCTGTTATGTTGATGTAATTATTATTTTGTTATAATTATTAATATTGTGAATTTATTTGGCACGGTTGATTGTAAATTGTGCCTTTTTTTATTCTTTCCTCAAAACATTTACCTCATCTTATCTTGACACACCTGTCAGCAGTTCAGTGTGAAAATGGTGGCCGTTATTGTTTGTTTTCCTCTCTGGCCCTGCATGGAGGGCTTGGAGGGGGATTTGTTCTTGTCTCTTTCTTGCAAagaaatatttttttaatcattAAAGCAAGCATAAATTACATTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916764 lncRNA upstream 36942 42532382 ~ 42534870 (+) False G805694
TU916767 lncRNA upstream 52300 42496861 ~ 42519512 (+) True glut1b
TU916742 lncRNA upstream 113980 42457630 ~ 42457832 (+) True G805673
TU916705 lncRNA upstream 170181 42401314 ~ 42401631 (+) True G805640
TU916703 lncRNA upstream 172957 42398645 ~ 42398855 (+) True G805638
TU916827 lncRNA downstream 18163 42614860 ~ 42615200 (+) True G805749
TU916858 lncRNA downstream 65118 42661815 ~ 42664451 (+) True G805779
TU916860 lncRNA downstream 69072 42665769 ~ 42665983 (+) True G805781
TU916865 lncRNA downstream 80839 42677536 ~ 42677836 (+) True G805786
TU916867 lncRNA downstream 82447 42679144 ~ 42679349 (+) True G805788
XR_002474810.2 mRNA upstream 6478 42563408 ~ 42565334 (+) True LOC110532135
XM_036988050.1 mRNA upstream 7219 42563408 ~ 42564593 (+) False LOC110532135
XM_021615760.2 mRNA upstream 15319 42546845 ~ 42556493 (+) False tpx2
XM_021615759.2 mRNA upstream 15319 42546846 ~ 42556493 (+) True tpx2
XM_021615761.2 mRNA upstream 25281 42541021 ~ 42546531 (+) True trappc6b
LOC110533013 mRNA downstream 55435 42652132 ~ 42689483 (+) True LOC110533013
XM_021615779.2 mRNA downstream 93596 42690293 ~ 42695335 (+) False LOC110532140
XM_021615778.2 mRNA downstream 93597 42690294 ~ 42695335 (+) True LOC110532140
XM_021615780.2 mRNA downstream 102254 42698951 ~ 42712719 (+) False foxp3-1
XM_036986931.1 mRNA downstream 102254 42698951 ~ 42742383 (+) False foxp3-1
TU916660 other upstream 223026 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 239374 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 547409 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1136389 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1550310 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1599018 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1845965 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3538034 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5385304 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5948757 48545454 ~ 48570593 (+) True G812688

Expression Profile