RNA id: XM_021615778.2


Basic Information

Item Value
RNA id XM_021615778.2
length 2199
RNA type mRNA
GC content 0.47
exon number 8
gene id LOC110532140
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42690293 ~ 42695335 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGGCAATCATTACTCACTGCTATCGGAAAGGAATTGTTCAGACAATGATGCCACCTCAACACGGAACTGACAAGACACTCACCAAGTGTCTGTCTTTGGAGAACAGAAAAACAATCAGTCTTTCTATAGGAGTAGGAACTGTACTCCctgagaagatgagaggagacaaCTGCAGCTGGTTAGGAGCAGAGATCCCACTGTCATGGGAGTTGTTCAGGGtggtcAAGGATGAGCTCTGGTTGTTTATCATTCCTGCCGGATTTGCTGTGATCATTCTGGCCCTGTTCCTAGAAGAGGTGGGCTTCTTCCTGCGTCACGTGCCCTCTTCCAGACGTCGGTGCCTCTACCTGTGGATACTGGGCATGTACCCGGTCTTTGGATTAACCTCCATCATTGCACTGTATGTTCCTCGCTCCTCCTCACTTTGTAATTTCATAGCTTCTCTGTACCACTCAATCACTCTGCTAAAGTTCATGGGGCTCATCACAGACTTCTTTGGGGGAAAGGCCCGCATGCTGGAGATCTTAGCTGGAGAGCAGGGTTCTCCAGATCCATTcccatgttgctgctgctgttgcctcCCTATGATAGCGATCAACAGGACCAGCCTGGGGTGGATGATGGCTGCTGTGCTTCAACTGTCTGTGGTCAGAACCATCCTATTCTTTGTCACTCTGGTCCTCTGGACAGATGAGCAGTATGACTATGGACATGTGGATTCTGTCAATCCCAATGTGTACGTGAATGCCATCATAAGCGTGTCTACCTTCCTGTCTTTCTATGGCCACTTGCTGTTTTACAAGGCCACCAAAAAGGCTCTGCCTGGCTATGGGCTGAGGGCCAAGTTTGTCTGTATCATTGTAGTGTTGGTGCTGTGTGGCCTTCAGAATGGAATCCTGGAGACCATGGGGGCCCTGGAGGTGGTGCCCTgctcccctcccttctctgttCTCATGCGTTCCCAGCtaATTTACCACTACTCTGTGATTGTGGAGATGTTCTGCATATGCCTCTTTGCCCGCCACACGTTCCGTAAGGTGGAGCCCAGTCCGGAGGAGGCCTTTGGGTTGGAGGAGAGGCCCCACAGAGGCATGCTACTGGAGAAGGCAGTTCAGACTGAGGACGTGGTGCCACTCAGGGAGAACCCCTGGCCTGGCTGGTGCGGCGCTGGTGTCTCCAATCCCGACTATAACAGTGACAGCAGTGAGGACAGCCTCTGTAAGGTCGAACACGCCTCCCTGGATCGCTTCCCTTTCCCTCTTCAACCCAGACGTCAAAAGATGATGCCAGAGAAGGTAACTGATGAAAGTGCCACTTTGGAGCTGTCCAAACTGACTGTTACTGCGGACATCAACTTTGTGGAGTCTAGGAATGTTACTGTTGTATGACAAATGGAATGGATTGTCCTGGAATCTCCTAACAGGACAGCAACACGGGTCAACCTCCAGGAAATGGAAGAGAAACACCACACCGCTTGAGGTAGTACCTTgcccagtttttatttttatgtatattGACTGAGATCATGCATTTATTCATTCATCAGTTGAATGAAGATGGTAGCTAATGGATATTTTTGTTCTACCCATAATTTCTTGCCTACATTTTATATCGAGCATGCTCAGTACATTTTGTTTTGCAATGTTTCTCAAAAAGccagtacattttttaaaagccTATTGCACAATACTTTCAGAGGTATTTATCAGTTTCTCATGCCTTCTCTCAAAACTTACAATAAACCTTTGGAGTTTGAAATGAATTTGATGACCTTAATGGGTACATTTCATGTAATATTGAATACAAAGTAAACACTAATAGAATCTGTTCCTTGGAGTAGATGGTATTTGCTCCATGAGCTTCTCAAACCACACAAACAGTATGCCTCTGGCCTAGCCTTCCCTCTGAAGTGCATTGATACCAAAGATAGGTCTCATATTGTAAACTAcaacataaaaaatattttaagtaGTTAACTCTGGCTTGGTGCTTGACTTGGGCCGGAGCGCTGTACCGGCACTACTAATTTTTGGGGAATTGCATACCGGATCTGCATTGAATAGAAATAGaataccacagtatgagtcataatacccatatccacggggaagtaggggtgctgccTCCCCCCACACTTTGATAACATTTGCAGAACCCCTATCCTtcaaactaaactcagcaaaaaaagaaacatccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916867 lncRNA upstream 10945 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 12458 42677536 ~ 42677836 (+) True G805786
TU916860 lncRNA upstream 24311 42665769 ~ 42665983 (+) True G805781
TU916858 lncRNA upstream 25843 42661815 ~ 42664451 (+) True G805779
TU916827 lncRNA upstream 75094 42614860 ~ 42615200 (+) True G805749
TU917305 lncRNA downstream 189350 42884685 ~ 42885267 (+) True G806141
TU917415 lncRNA downstream 224197 42919532 ~ 42920390 (+) True G806227
TU917434 lncRNA downstream 274440 42969775 ~ 42970005 (+) True G806243
TU917435 lncRNA downstream 275178 42970513 ~ 42970739 (+) True G806244
TU917436 lncRNA downstream 275488 42970823 ~ 42971089 (+) True G806245
LOC110533013 mRNA upstream 811 42652132 ~ 42689483 (+) True LOC110533013
XM_036988051.1 mRNA upstream 93597 42571812 ~ 42596697 (+) False LOC110532136
XM_036988052.1 mRNA upstream 93597 42571812 ~ 42596697 (+) False LOC110532136
XM_036988053.1 mRNA upstream 93597 42571813 ~ 42596697 (+) True LOC110532136
XR_002474810.2 mRNA upstream 124960 42563408 ~ 42565334 (+) True LOC110532135
XM_021615780.2 mRNA downstream 3616 42698951 ~ 42712719 (+) False foxp3-1
XM_036986931.1 mRNA downstream 3616 42698951 ~ 42742383 (+) False foxp3-1
XM_021615781.2 mRNA downstream 3810 42699145 ~ 42712719 (+) False foxp3-1
XM_036986929.1 mRNA downstream 14525 42709860 ~ 42747450 (+) False foxp3-1
XM_021614385.2 mRNA downstream 38224 42733559 ~ 42747753 (+) False foxp3-1
TU916660 other upstream 341508 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 357856 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 665891 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1254871 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1668792 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1500380 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1747327 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3439396 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5286666 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5850119 48545454 ~ 48570593 (+) True G812688

Expression Profile