RNA id: XM_021615781.2


Basic Information

Item Value
RNA id XM_021615781.2
length 3266
RNA type mRNA
GC content 0.44
exon number 7
gene id foxp3-1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42698951 ~ 42747753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCGACCTTTATCACACGCTTGTCGTAGAATACCTAGCCAGGTTAAAGCAAGAACAATGTTTGAGTAGGCAGAACTATCTGCACATGTGGATTGTGTGCTCTTTTTTTTTGTAGTACTAACAGCTTGAAGTTGATACAGTTAACTTTTAAAAAGCCAAACGAATGCAAGCGGATATGGAGTAACTACTAGTTAACTAAAGTAGCCCAAGAACTAGCTAGTTAGCAAGCTGTGTGTCATTAGGACGCGTCAATTTTATGAAAATTCTCGTGTTTTTCTGACAGCCCTACTTGCTTGCAAACATCAATTAGCGCGCCAAAACAGACCTTTTTCTGTAGAACCACAGTTTCTGAAaccagaggcgcaacatcgcgAGACTTCCAGGAACGCTAGCGAAACCGACCAAGTAGACCAGGCTGGGGTTTGAGAAGTTGTAGCGTATCCTGCAAGCTGTCTTTGGACGATCTGCAGACTATCTGCCGCAGGGAAAGACTCCATTGTAAACCGCTACGGGTGAACAAGCATAACATCGATGACTATGAGGTTGAGTACCTCTGTGACTACAAGAAGTCTAAGcagacatatgGAGCAGgagtcctacctggttaaatggaAGGGCTACCCCGAGTCGAGCAACACCTGGGAGCCCCGTAAAAACCTCAAGTGCAGGAAGCTAATGACGCAGTTCCACGAGGACATGGAGCACGAGCTGAGGCAGAAGAAGAGACGCACCACCTGCCCCAAGCGGCTGGACAAGGACGTGGCCTGGACCCTGGTGCAGAAAGCCAAGCTCCGCAAGAGGCTCCAGTGCTGGGAAGCCGACCTGAACAAGACTCGTAACCACCCGGGGCGCATCTTTGTCCTGAACGAGGTGGACCTGGACGGTCCGCCCAGGGACTTCACCTACATCACTAACTACAAGGTGGGCGAGGGCATCGTGCTCAACGAGATGGCCGTCGGCTGTGAGTGTAAGGACTGCTTTAGTGATCCGGTTGGCGGCTGCTGCCCCGGGGCCTCCCTCCACCGCCTGGCCTACAGTGACAAGGGCCAGGTGCGAGTGCGGGCTGGGGAGCCCATCTACGAGTGTAACGCACGCTGTAGCTGCGGGCCTGACTGCTCCAACCGCTTGGTCCAGAAGGGCATTCAGTTCGACCTGTGCATCTTCAAGACTGGGAATGGCCGAGGCTGGGGCGTGCGTGCACTACAGCACATCAAAAAGAACACCTTTGTCATGGAGTATGTTGGAGAGATCATCACATCGGATGAGGCGGAGAAGAGAGGACACCTGTATGACCGGCAAGGCGCCACCTACCTGTTTGACCTGGACTACGTGGAGGACGTTTATACGGTGGATGCCGCTAACCATGGCAACATCTCCCACTTTGTCAACCACAGTTGCAACCCCAACCTGCAAGTATACAATGTGTTTATAGACAACCTGGATGAGAGGCTCCCGAGGATAGCATTATTTTCAACACGCTCCATCAGGGCAGGAGAAGAGCTCACTTTTGACTACAAGATGCAAATTGATCCAGTTGATGCAGAGAGCACAAGGATGGACTCAAATTTCAGTTTAGCTGGACTCCCTAGCTCTCCCAAAAAGCGGATTCGGGTGGAGTGCAGGTGTGGATCTGACACATGTCGAAAGTATCTCTTCTGATATAGATTGGAAGCGGAACATCAAAGCTAGAACAGACACATCATATATTTTGGGGAATTCTGAAAGTTGTACAGCGTTTACATGAATTTATATTTGTCTACTTATTTTACTTTCATTAACTTTTTAAGCCACATTGGCGCATGGGTGATATCAAAACTGATATGTTTGGGGTCATAAAAAATAAATCTCCATATCTAGTACGTTGGTAAACGATTTTAGTGAAACAATGAACAATATGATCTACATTCACAAATCTGTGTTTTTAAAGATTTCTTCAGAGATTATACACtgcgtgtacaaaacattaacaacacctgctctttccatgacagactaacctggtgaaagctatgatcccttattcgtgtcatgaaggggaggagacaggttaaagaaatacttttttaagccttgaaacaattgagatgtgtttgtgtgccattcagcggatgaatgggcaggacaaaagatttaagtgcctttgaacggggtatggtagtagctgcCAGTGTTCTATGCGCAACAGTTTCCGCtctatatcaagaatggtccaccacccaaaggccaCCCAGCAAACTTaacacaacagtgggaagcaatggagtcaacatgggccatcatccctgtggaacgtgtTTGACATCTTGTAGAGTACCTGCACCGACGAAttgaggggtgcaactcaatattaggaatgttcttaatgttttgttcactcggTGTATATCTGTAGTGCACTGTTTTCAGTTTGTCAATTTTCTCAATGTTTGAGATTTCAAAAGTTTGTAGGCTGTGTACACAGGCAGATAAATTCTGATATTTCCCCACTTATTGGTCTTTTGGCCAGTCGGGTCAGCTCTTTTGACGAcaattgggcaaaagatcagaattagaCTGCCTGTGTAAAACAGCCATTGAGCTTCAAGCCCTGTTGGTGGAAAGTAATGTAATTAATAGGTGTACTTATACTTTTATACTAATATGTTTTCAGTTGCACTTACAATTACCGGTAAGTGCAGTTCTTCCACACTTCTTGCAAGTAGTGCTGTATATTCTTGTCTTAAAATAAGGTATGAATTAGTTTACCCCCACACTGTCCAGGTGCATGTTGATTTTCAATTAAATGTGAATGATTACATTCCGACGCTCCCATTTTGTTGTCCTGCAATTCACGGCAAGCAAGCAGTACCATGAATCCGCTCTCCATGCTTTTAACCTATTTTTGTGTGAAGCAGTTGGAAAATATCCTTTGTGTAGTTAGTCATTTTACTTTTTCATGTAGCTCTGATAGCCAAAGTAAACACAGTTCTGTTTTTTCACGTAACATTATTACATTTGATAAAATGTGAAGGTTTGCAGCCAGCAAAACCAATATAAGTAAATGTTTTAATCAGATGTATTGTTCtggaaaatgtaatgaaaatgtaatgaaaattTACCTGACGCAAAATGTAGTTGTACTAAAATTAATTTTAGTACAACCACAACACCACTAGATGGTGTAGCTGCATTCCTATGACTTCAGATCAACAACTGAAAATGTACACTTTCCTTTTATACTTGTCCTGACGTTATGGCTGCGTTTTATAAAATAAGTCCAATGCTGATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916867 lncRNA upstream 19796 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 21309 42677536 ~ 42677836 (+) True G805786
TU916860 lncRNA upstream 33162 42665769 ~ 42665983 (+) True G805781
TU916858 lncRNA upstream 34694 42661815 ~ 42664451 (+) True G805779
TU916827 lncRNA upstream 83945 42614860 ~ 42615200 (+) True G805749
TU917305 lncRNA downstream 171966 42884685 ~ 42885267 (+) True G806141
TU917415 lncRNA downstream 206813 42919532 ~ 42920390 (+) True G806227
TU917434 lncRNA downstream 257056 42969775 ~ 42970005 (+) True G806243
TU917435 lncRNA downstream 257794 42970513 ~ 42970739 (+) True G806244
TU917436 lncRNA downstream 258104 42970823 ~ 42971089 (+) True G806245
XM_021615779.2 mRNA upstream 3810 42690293 ~ 42695335 (+) False LOC110532140
XM_021615778.2 mRNA upstream 3810 42690294 ~ 42695335 (+) True LOC110532140
LOC110533013 mRNA upstream 9662 42652132 ~ 42689483 (+) True LOC110533013
XM_036988052.1 mRNA upstream 102448 42571812 ~ 42596697 (+) False LOC110532136
XM_021614385.2 mRNA downstream 20840 42733559 ~ 42747753 (+) False foxp3-1
XM_021614383.2 mRNA downstream 20842 42733561 ~ 42747450 (+) False foxp3-1
NM_001246333.1 mRNA downstream 23948 42736667 ~ 42747450 (+) False foxp3-1
XM_021614384.2 mRNA downstream 24020 42736739 ~ 42747748 (+) True foxp3-1
XM_021615788.2 mRNA downstream 40557 42753276 ~ 42867302 (+) False LOC110532144
TU916660 other upstream 350359 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 366707 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 674742 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1263722 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1677643 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1482996 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1729943 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3422012 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5269282 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5832735 48545454 ~ 48570593 (+) True G812688

Expression Profile