RNA id: XM_021614385.2


Basic Information

Item Value
RNA id XM_021614385.2
length 4912
RNA type mRNA
GC content 0.43
exon number 14
gene id foxp3-1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42698951 ~ 42747753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctaaaggcgaTGTAACTACTTTATTGAGAAAACACGTACTTACTTTATcttagctaggtgagacaaccacatctatcttaagatgaatgagTTGCTCTGAGTATGTGCGTCTGATATATTACTAAAATGTTTTAACATTTTTGAATGTAAATGCAATAGCAAGTGAATGGTGAATGatgactggagtcattttctttcTAAGCGAGTAGATAAGATGTTTCTGACCACTTCTAAATTAATCCTGATAATgccatgatttaaaaaaaatcatgaatgaatctagaataatgatgagtgagaaagttacagaggctacTACAAAATCTCTCACCCATACCAATAATAGAGGAGGTAAGCATTTTTTGGGGTATGATCTTTGTGCCTCTGTAACCTTCTCATGCATCATTGTTCATGATCcattcatgattatccataatcatggtagcatccacataaATGTAGAAATGTTTAGAAACATCCTCTTTTctcacaataaaagtgactccaaaatggcaaAGTGACTCTACAAACTCAGTTCCTACTGGGCAAAACATCATCCAAAACACAACCGAAAcatactgcaaatgcatccaacaagtttgtggaGTCACAAGTCCTTGTGTTCAAGGAATATCAGACCAACTACTAAACTGACcaaatactaaatactaaactGAGCAGTTTAATACTCTGTAAGTGAATTTGGCCAAGTaattatgatttaaaaaatacaCATCATGACATTAATTGAGAAAAGTTATGAAAAACAACCCCCACAAAGGTTTTTTGTCAAAGCCTGTGTACAGTTGTTATCTAATAAGGGGAATGTTTGTTAAGATTAAAAAGGAAATTGAGATGCTCAAGCAGACCGCTTCCTTGCAACCTTCTGTGGTGTATTTTAGATAGATGACCTTTGAGAACCTGAAAAATAACTCTTCAGAACAAAGTGTTTTACACCTGCTTAGAATGTCATACTTTACCTCGCGCGGGCTTCCCCGTTGCGTAATGGACTATTTTTTCATTGGTTATGTTAATGTTTCCTCTGTAAAATGCCTCGTTAACCATTTTTGGTGGTGATGCTGGTAGTAATGATAATGATGATTATTATCTttattacaaaataaaataagtaCAGCGGACACAACAACAGCAAAACAAATCCATTTCTCACAAGAAATACACCTTTTGATGTCACTATCACAATTGTAATGTTGATAGTTTCATATACTGCTCATGCTATTAACCTTTTGAGCATACATGTCATAACGAGAAAAAATGTAATCTTACTTCAGCTCGTCATGATTAGGACACACCTGAGGTCAGCAACCGCCCGCTCTAGCCCCCTATTACCACTCCTCTGCTTCTTCTAGAGATCCTCACACACGAGGAAAGTTTAATCtcagacaaaacattttttattccaTGATGAATTACATCCAAAGATGTAAGGATGCAAATGGACAACATATGACTTTTTGAACGTCTTGTCAGCAACTatccttacagtatgtgtggtcaGGAGTGACAAAATATGTGGTAAAAGATGGAGCAGTCTGGGTCCTTGCTCTGTTCCTCCGCAGACTGAGGTCGGCGAGAAAGTGCATAATTTCATTGTTTTCCCTCAGATTGTGTGTTGCGTTCACACGAGAAGACAAGTTTCAAGTAAATGTGTCTTGGTACACATGAGAAATCGTACTCCTCAGCATAGCCAGTCCAAGACTTAAACAGGGGTAAAAGTAGACCTAGAAGAGTATTTTAGCAATGGAAAGTTATTTAACAATGTGGTTTGGAGAATGTGTTGGGTAATTGTAGGGTTTAGAGCCTGCCGATATCACTGCGGACTGTTTAGGCCCCTCAGGGTCATGGTGGGGCATTGCCTTTGTAACAGAGGTGGTTCAATGAGCCATGCTTGCATGTTGAGTAACTTTGTCGGAAACCTAAAGACTTGCGCTAGCTTCCCAAGCTTAGGGTTTAGCTCAGTGAGCCAACACAATTTTGTGGTGCGCAGACGACCAGGGCTGCAACCGAGACGGTCCCATCGGTGCCAGTCATTCAGTTGATGCCTATTAGCTGCTGGGGTCATTGTGGAGAGGGAGACGAGGTCCTGAAGACTTGCGAAAGCTCCCCAAGCTAATGCCTAGGTTTCAGACCACCGGGCTAACACAGACAACCCAGATTCATTTGATTTACACTAATTCAGTACAATACGGTGGATCACATAATCAAcaatcacaaaacaaacaatttcTGTGCACTGCCATTGTGGCTTGTAGCATTTATTTGTTCTGAAATAGGTTGTGTTTCAGACTATTGAGGGTAGGGTAAGTCATTTATGCTTATTTGTGTGAAACCTGTTACAGCGATGTAGGACATTTCCATTTCGATGGCAGGCGTAAACTTTTTTCCTACTGTAACTTCCAGGTATAAATACAGACTGGATTCTGGCAAACACACATTTCACGCATCTGTTCCCTCTCTCACACGTTGCTTGTGACATTTTCAGCATCTCATCCTCTTAAGAACAGGAAGACAGAAAGCGAGCAGGAGATACGGAAGGTGTAAGGCCCAGGGATGCTACAGACTGAGAGTGAGAGGTTGAAGAGTGGGCGACTGAACAGTGGGCGACATCAGCAGCAGCGAGAGCAGCGAGAGGAGCCAGACGCATGTACCCAGCCCAAAGATTCTGCCTCACCTCAGCTCTGTGCTCGTACCTCTGTTACGCAGATGGGCTTCCCATTGATGATTAGACCTGGAGTTTCACTTATGGCCTCGTCTCAGCTCCAAAGCATATTGTTACGGCAGTGTTCcagtgaggaggaggggagatcgCTCCTGCAACGGGTGTCTCTGTGCCCCCAGTTGAGCCAGCACAGACCCTCTGTTCTACGCCAGGGTGTCCAGGCTGCCCACGTGCGACCGCAGGCACCATGCACTCTAACAGAGGCCAGTTCAGCTCAGCCCATCTCACTGTGCAAGGTGGAGGTGGACACAGGGAGCCGTGGACAGTCCTCTCCCCCACACTCTGAGCACTCTCCTGGGCCAACTCGTCACCCCTCTCCCCCGAGGACAGCCAGTCCTAAGCAGAGCTCCATCATCACCAGGCAACATGAGGCAGGTCACCCAACCCTAGAGGGGTCCAGTGCTCTGTTTCTCAACGGACTCTGCTGCTGGCCTGGCTGCGATGCAGTATTTGAAGAATTCCCCAGTTTTTTGAAACACCTCCACTCTGACCATGGCCATGGAGACAGAAGCATTGCACAGTGGAAGGTACAACAAGACATGGTGCAATACATGGAGACCCAGCTGACTGTGGAAAAACAGAAACTCTTCGCAATGCAACTACATCTGCACCTATCTGGACACAAATCAACTGTCTTGGCAGCTTCAGACTGGCCCTACAGGCACAGCCTGTCACTAGGCCTGCCCCAGAACCGAGGTGGAGTGTCACGCTGCACCACTAAAGAGCCAGAGGAGCTGGAGCAGCATGAGTATTGGCCCTCTGCTGCTCCCCACCACCTACGGCCAGATCTTATCCCGAGTGTTGAGTGTTACAAATACAACAACATTAGGCCACTGTACACCTACGCCTGCATGATAAGATGGTCTATACTGGAGTCTCCAGACAAGCAGCGCTCCCTGAATGACATCTACAACTGGTTCACCACCATGTTCTTCTACTTCCGACACAACACGGCCACATGGAAGAACGCTGTCCGTCACAATCTTAGCCTCCACAAGTGTTTTGTGCGAGTGGAGGGAGGCAAGGGGGCCGTCTGGACAGTGGATGAAATGGAATATCAAAGGAGAAAGGGACAAAAATACCACAGGGATCATCATGTGAAATGGCTGGCACCCTACTCCTTATTTCGTCCAGAGGAACCTTGAACATAGCCACCCCTTCAGTGAATGAAAAACTACTGGAAAAGGAAGTCACTAGGACCTATTACTGAATCAAGGTATTTTTTAACAAGGCTGGAGAAAAAGCCCTCCAGGAGGGTTGACCTgtcctggtctacagtatctacagAACCTATCATCACCTTCTTTGTTCAGCAGCAGATGGTGCTACAACATAGCACAGCCCAGGACTCTTTTGCCTCTAGACTCTTTTATTGTGAAGATGTGTGCACGGCTGGAATGGCTATACGTTTTGCAGCATttgaaagaaaaatatatacttaGCAATTATTTGTCAATCAAACTTAGTGAAAGGGTTAACAATTGTTTTGTTGTGTTGGCTACATACCGTATACTCTATCCCACTGGGCTCATCAttgtaaactgttgttttgagggtggaaTTTCAACCATAGGATTAGTTCAACATTTTAATtaattttcaacatagacaaacattgtatGAAATATAAttaatttgtacctttgaaataATGTCAGATCATCACTCAATAAGTTAGCCAACAAACTTCTGGCTGATTTattgagtgggtgaataaaggttgaaatcgCATTGATCAACGTTtctaccaaatattacccaaatgTCCACTTAGAAATGAaattgtgtgcccagtgggatgttacAGCAAGCATGTACAATTTTACactgtgttaaaaaaaataaaaaatactctgCAATTAAATGTATCTTTGATTATATATTGTGGATGTTATCTGTCTAATGAATCTATACCCTACAGGAAACAGTATGACTCTGATATCTCATCAAAACAATGGATCTAACATTCCATTGACATCAAGCTAAATAGTGTCTATACAGTAGCATTTGGTTTCTAAACATCTCTATTGTGTTTTTCTTGTTCCACTGCTATTTATCCATTTTGCCGCAGACCCAGCAGTTGTCCTTCTGTGTGAACCAGGCTTTCCCTAGCAAGTGTTATCCAGTTATTTATATCCAAAGATACTTTTCTAAAGGACAACATGCCTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916867 lncRNA upstream 54210 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 55723 42677536 ~ 42677836 (+) True G805786
TU916860 lncRNA upstream 67576 42665769 ~ 42665983 (+) True G805781
TU916858 lncRNA upstream 69108 42661815 ~ 42664451 (+) True G805779
TU916827 lncRNA upstream 118359 42614860 ~ 42615200 (+) True G805749
TU917305 lncRNA downstream 136932 42884685 ~ 42885267 (+) True G806141
TU917415 lncRNA downstream 171779 42919532 ~ 42920390 (+) True G806227
TU917434 lncRNA downstream 222022 42969775 ~ 42970005 (+) True G806243
TU917435 lncRNA downstream 222760 42970513 ~ 42970739 (+) True G806244
TU917436 lncRNA downstream 223070 42970823 ~ 42971089 (+) True G806245
XM_021615780.2 mRNA upstream 20840 42698951 ~ 42712719 (+) False foxp3-1
XM_021615781.2 mRNA upstream 20840 42699145 ~ 42712719 (+) False foxp3-1
XM_021615779.2 mRNA upstream 38224 42690293 ~ 42695335 (+) False LOC110532140
XM_021615778.2 mRNA upstream 38224 42690294 ~ 42695335 (+) True LOC110532140
LOC110533013 mRNA upstream 44076 42652132 ~ 42689483 (+) True LOC110533013
XM_021615788.2 mRNA downstream 5523 42753276 ~ 42867302 (+) False LOC110532144
XM_036988058.1 mRNA downstream 5523 42753276 ~ 42867302 (+) False LOC110532144
XM_036988059.1 mRNA downstream 5523 42753276 ~ 42867302 (+) False LOC110532144
XM_036988061.1 mRNA downstream 63188 42810941 ~ 42867302 (+) True LOC110532144
XM_021615790.2 mRNA downstream 155343 42903096 ~ 42911687 (+) True LOC110532147
TU916660 other upstream 384773 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 401121 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 709156 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1298136 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1712057 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1447962 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1694909 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3386978 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5234248 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5797701 48545454 ~ 48570593 (+) True G812688

Expression Profile