RNA id: XM_036988061.1


Basic Information

Item Value
RNA id XM_036988061.1
length 4682
RNA type mRNA
GC content 0.47
exon number 18
gene id LOC110532144
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42753276 ~ 42867302 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcacagtagcctacacacagcACGGCCCCTGCTAGAGCGTCacctctctacctcctgtccctCGCGCTTCATCACCTCTGGTtaataaagtaacaaataaatTGCTCTTGCTGCTGCTTCCGTCACTCGGCTCTGATTGGAAAGGGTCTGGATCCGACAAGGACTCCAAAGGTTAACACTGCTGTCATTGCTATGGAGACCACCCAagccctcctcctctttctactgagTTTATGTGTCTACAGTTGCCATGCCAATGCACGGACTGCTCCCAGAGTGCATTTGTCATACAAAGAGCTGATAGAGACGCGGACGGCGCggcctttctccttctccttcaacaCCAGTGACTACCGCATCCTGCACATGGACCAGGACCAGGGCCGTCTCTACCTGGGCAGCCGGGAGTACCTAGTTTCCCTGGACATGCACAACATCAACAAGGAGCCCCTCATAATTCACTGGCCGGCCACTAcccagaggaaaggagagtgtAGAATGACTGGAAAGGGTGGGCAGGGGGAGTGTGCAAACTTTGTGCGTCTGATCGAACCCTGGAATCGCACACACCTGTACACCTGTGGCACAGGGGCCTACAAGCCCATCTGCACCTTCATCAACAGAGGATGGAGAGCAGAGGAGTACCTGTTCAGGCTGGTCCCTGACTATGTGGACTCAGGGAAAGGGAAATGTTCCTACGACCCGCTGCAAGAGAATGCTGTGGCCCTTATCAATGGGAATCTGTATGCAGGGGTCCACGTTGACTTCATGGGCACGGACCCGGCCATCTTCAGAACCCTGGGAGACAGACCTGCCGTCAGGACTGAGCAATATGACTCCCGCTGGCTGAATGAGCCTGTGTTTGTGAAGATCCAGCAGATTCCAGACAGCTCCGAGAGGAACGATGATAAGCTCTACTTCTTCTTTCGGGAGAAGAGCCTGGATTCGGCTGGGGGGGGAAGCCCCAGTGTCCTGGCCAGGGTGGGCCGAGTATGCCTGAATGATGATGGGGGTCAGAGGTCACTGGTCAACAAGTGGACGACCTTCCTGAAGGCTCGGCTGGTGTGCTCAGTGATAGGCAGTGATGGTGTGGAGACCTATTTCGATGAGCTGAAGGATGTCTTCATTCAGCCAACACAAGACGAACGCAATCCTGTCGTGTACGCTGTCTTTTCCACTGCGGGGTCTGTGTTTAAGGGCTCAGCCGTGTGTGTGTACTCTATGTCCGACATTCGCAATGTCTTCAATGGCCCCTTCTCACACAAACATGGACACAACTACCAGTGGACCCCCTACACTGGAAAGATCCCCTACCCTCGCCCTGGAACGTGTCCAGGAGGAACGTTCACCCCGGGCCTCCGCTCCACCAAGGAGTTTTCGGATGAGGCAGTGAACTTTGTGAGGGCACACCCCCTCATGTACCACCCTGTCTACACAATACACAAGCGCCCTCTGGTGGTCCGAACTGGGGTGGACTACCGATTCACCTCCATCGTGGTGGACCTGGTGGATGCTGTGGACGGGAGGTATGAGGTGCTCTTCCTAGGCACAGATCGTGGGACAGTCCAAAAGGTGATAGTACTTCCTAAAGACACTAGCACAACAGAAGAACTCACATTAGAGGAAGTGGAAATGTTCAGGACTCCAGCTCCTATTAAGACTATGAAGTTATCATCAAAAAGGCAACAGCTGTATGTGTCGTCAGAGAGGGGGCTTACCCAGTTGTCCCTGCACAGGTGTAGCGTCTATGGGAAGGCCTGTTCAGACTGCTGCCTGGCCAGAGACCCTTACTGTGCCTGGGACGGGGAGACATGTGCCACCTTTAGCCCCTCCACCAAGAGGCGAAGCAGAAGACAGGATATTAAGCATGGAAACCCCTTGCGGCAGTGCAGAGGGTTCAATGCAAAAGTGGAGAAGCGTCTCAGGGAAACGGTGCAGTTTGGGGTGAAGGGGAGCAGTACGTTCCTGGAGTGCCAACCTAGATCTCCACAAGCGACAGTCAAATGGCTCTACCAGACACCAGACGGCAGGAGGAAAGTGCTGAGCCGAGACGGAGAGGTGCTGAAGACAGCTCATGGCATCTTGCTCAAGTCTCTGAGCCACGCTGACAGGGGGCTGTACCACTGCTTGGCCACTGAGAATAACTTCAAGCACACGGTGGTCCGCGTGGCCCTCCGCATCCTGGACCGGGAGATAGTGGAGGCCCTCACCTCCCTGGATGCCCCGCTGGAGGACCAgaacctccatcaccaccacccacCGCCCCCGCCTCAAACTCTGCCACTGCAGTTCTCCTCCCAGCCGGAGATCCGCCTCATCAACCAGTACTGTCAGTCCTACTGGCAGCAGTTCAACCCCAACCTTCCCACAAAACGCACCAACAGGAAGCATGTCAAGAGCCAGCCAGAGCCAGCCCCAGGGGGCCCTATCCCCTCCTagactccttctctcccctctccttcactGGTGCCCGGGCCAGGTCCTGGAGGGTCACAGTGGCCCTCCACACTGCAGAGTCACTCACTCATGTtgtgatgttgatgttgttatgTGTATTGTTCATCCCATTCCCATTCAGGGTTAGTCTCCATGGGCCCAATTCTGACTTTAGATCAGTGCACATAGCTATGTGCTTTCTTATAAATCCTCTATTGATGTCATTGAGAGTTGAGGTCAAATTGGAGTTACACGCACAGAGGGTTTGGTCCTAAAAATCTTCCGTTTATTTAGCAAATGAACTGCCCTATTCAGTCCAAATTAGTAACTAGTAACCTGAATATAATCCCTGATCCTATAAACCTGGGTATTATCAATGGGATTGCTACTTATGTTATAGTATGTCTCACTCAGTAtaagcagttttagaaactgcagAGGATTGTTAGTGTACACAAGAGTTGTCTAGCAAGCACCATGGTAGTTAGGCGATAGGGAGACCCTATCATATGAATCATTGTAAAACCATACTTTTACAATCCATTTGTTCCCCTGAATCCAACATTTTCAAAAATCTGTGTTTCAAACATTCATTTGAACTAATTGATGAAAAATTGGCAATTTTTGTATTATATTATGTGTATTGTGTTTCCATTCGAAATATTGTAACAGTAGAATCCTGCCGATGTCAAATCAGGAAGAATATGGCTCAGTTTTTTATCCGCCATTTATTAAGATTCTGATATAACAACGAGGTGATCAATTTGAGCAAATTTACATTGTTTTGATTGTGTTTTTAAAATGACGTATTACAGAAAATGTGGATAATCAGAAACTCCTGCTTAATTTGACCAAACGTATTTGTTAGCAGGAAGAAACTGACCAAATGAGTCTCTACTTCTTTTTATTTGTTGTACTCTTTGGGtttatgcatatatatatatatatatgtttttttcccAATACAACATTTACTGGATACAAAACCATTAGCGTCAGCTAAAAAGCTATCCAAGTCTCCGACCTTGTGCTTCTTTCTGCTCAGCACTTCAACAGTGTGTTAGGCAGAGACAATATTTTGGACCAAACTGTTCCATTCTCCAGCCAAGACTATAGAGGGATTAAaaaaatgtacatgtaaatagAGCAAGTTTGGTTTGGAACGATTCATTCAGAAAAAGAGATTCATTAGCTGTTGATTATTGCAGTGAGAAAAGAAATGGAGACAGTACAGGAGTTTGCTATTGCATTGCTTCAAAATGACAATACAGATTACCTCTTCTATGGGAGCTACATTACTTTTACACAGCCTGACACCTGATATGAACCTGATCCAACAACAGAAACTGGACTGGAAGGCTCTTTGAAGTTTGACTATATGACATGGCCACACTGTATTTCTTGTCCTCTAGAGATGAGACATGATTATAATACTCGCTAGCACTCACCTGGCACTTATCAACAATGTTGCTTAGAGCTCCTTTTGCCTGATTCATAAACTGTGGTCATCTTTCGACCTTATGTCATGTACTACGTGTGTACAGTGCGTTCATATGGACTTTTAGATCTCACAGAGATCTATGCTAGGTTTGGACTTTTCATGAATCCATTGCACTCCCTCTCACCCATGCCATGAAACATATTTTGAGACTGTAGATATTCTTGTTCTGCACTTTGGTGGTGGGGGTGTGAGGGCTGGGATGGGGAAGGGGATATTATAATTATCATGTGATTTACAGGACCAGTATTAACAGAAAGAGGATTTGAGGAAAAAGAGGTAGACCTTTTTGGAAACTAAAAGTAGAACGATTAGAATAAATACATTGTTATGGACAGGAACGCTCTAACAGATTACTCAACTCTGAAGCCAAAGAATACTCTTATTTGAATGAAAATGTGTTCTATTTAACATATTTTGCACTATATTCACATTGTGGCTTCACGTGGCTTCTTTGCCTTTTCTTAGCTATAGAGTTTGAATCCAGAAATGTCTACCTCTCGTTTTTGGAATATAATATGTACCAAAACAAAAATCACTCAAACAAAACAAAGTAACACTCGATACCATATTCCTTCTAGAGCAGGTAAAAATGTTTATGTGAGCTGATTCATGATGCCACAAGAGTGACATGAGTAAAGAGTGAcatggtctagggcactgcatcgcagcgctagctgtgccaccagagactctgggtttgcgcccaggctctgtcgcagccggtcgtgaccgggaggtccgtggt

Function

GO:

id name namespace
GO:0001755 neural crest cell migration biological_process
GO:0016020 membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU916867 lncRNA upstream 131592 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 133105 42677536 ~ 42677836 (+) True G805786
TU916860 lncRNA upstream 144958 42665769 ~ 42665983 (+) True G805781
TU916858 lncRNA upstream 146490 42661815 ~ 42664451 (+) True G805779
TU916827 lncRNA upstream 195741 42614860 ~ 42615200 (+) True G805749
TU917305 lncRNA downstream 17383 42884685 ~ 42885267 (+) True G806141
TU917415 lncRNA downstream 52230 42919532 ~ 42920390 (+) True G806227
TU917434 lncRNA downstream 102473 42969775 ~ 42970005 (+) True G806243
TU917435 lncRNA downstream 103211 42970513 ~ 42970739 (+) True G806244
TU917436 lncRNA downstream 103521 42970823 ~ 42971089 (+) True G806245
XM_021614385.2 mRNA upstream 63188 42733559 ~ 42747753 (+) False foxp3-1
XM_021614384.2 mRNA upstream 63193 42736739 ~ 42747748 (+) True foxp3-1
XM_036986929.1 mRNA upstream 63491 42709860 ~ 42747450 (+) False foxp3-1
XM_021614383.2 mRNA upstream 63491 42733561 ~ 42747450 (+) False foxp3-1
NM_001246333.1 mRNA upstream 63491 42736667 ~ 42747450 (+) False foxp3-1
XM_021615790.2 mRNA downstream 35794 42903096 ~ 42911687 (+) True LOC110532147
XM_021615791.2 mRNA downstream 45081 42912383 ~ 42930990 (+) True LOC110532148
XM_036988062.1 mRNA downstream 67962 42935264 ~ 42963028 (+) False LOC110532149
XM_021615792.2 mRNA downstream 74048 42941350 ~ 42963028 (+) False LOC110532149
XM_021615793.2 mRNA downstream 74048 42941350 ~ 42963028 (+) True LOC110532149
TU916660 other upstream 462155 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 478503 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 786538 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1375518 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1789439 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1328413 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1575360 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3267429 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5114699 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5678152 48545454 ~ 48570593 (+) True G812688

Expression Profile