RNA id: XM_021615790.2


Basic Information

Item Value
RNA id XM_021615790.2
length 4076
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110532147
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 42903096 ~ 42911687 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCACTGCTACCATGTACTCCTCCCATACGACTTCCTGCCTTTAGTTTAGATATGCACAATTTTATATTACACGAATGTGTTAGCTAGCTTTCGTAAAATGAAAAGCAATTTGCAAGACAATTAGGGAATCACAcagcattttttaaatggaaCGGTTGCTGAAATAGCCAGTGCCTTTTGTTCATGCGATGTGGAGTGATAACGTTAGTTTAGCTACCTAGGTCGCCAGCTAACACAGGCTCGCTAGCAAGCTTTTTCCAATGGACAAGCCTGTTAAACCGCTTTCTAGCTAGCCAACAGAAGCCTAATTATATGTAATTCAGGGGAAGATTTTTTTTCTAAAATAAATTACAAGGCACTTCTTGCAGTGATGGATGAAGTTGATAAGATTTTAATTCACTCGCTTAGACAGACTGGCACGGACGTGGGGAAGGATGTGCAGAGTGTGAAGCACTTCACCAGTGAGCTGATAGTGGAGGCGGTGGTGAGATGTCTGCGAGTGATCGACCCGGCTCTGGGAAGCGGACTGTGCCCCTCCTTACCCCCAGGCATGTCTGCCCGCTTCCGTGTTGGCATGAGCCTGGCACAGGCCTGTCAGGACCTTGGCTACAAGGGAGAGATTGGCTACCAGACCTTTCTGTACAGCAATGAGCCAGAGATCCGCTCCCTGCTCATGTTCCTAGTGGAGAAGCTGCCCAGAGAAAGTGCTGAGGCCTCGGACCAACCAGCAGGTAAATCGGCCCTCCTCCAGAAATCCATAGCTGCCCAGATTAAAGCTCAACTGGCCTTGCCCTGGCTCTCTCCATCCTGCAGACTACCCCTCCTCTGTAAAACACAGAACCCAGGACCGTCCCACAGTTTCCACTCTCAGACCCTTAGTTTACCCCACTGCCTCAAAGTGCCTGGGAAAAGGCAATTGAAAGAGGAAAATGACTACCACAGGGACTTCCTTCCCCCTGTAACTGCCCAGCCGTCGCAGCATGCCTCTGTGCCGGCCTCCCTGCTGGAGCAGCATGCAGGGGAGCTCAGTGCCGCCCAGGAGTGGGAGAACGAGTGGAACAGCCAAGGCCTTCTTTCCCGTCTCACACCCGAGGAATATCGCTCCAGGAAGCGTGCTCGTCTGCAGAAGCGGATCGAAGAGCAGCTACGCACTGCGGCCCAGACCCGCCCGGACACCCTCGGTGCCCACGGGTCGGGCTCTGACCTCACAGAGCTGCTGCAGTCCTTCGGGGGCTCTCCCCTCATTGGTGACATCCTCGCCAAGGGCACCCGCTTCACCCACACTGAAAAATTTACTTTCACAGAGgagCCTGAGAAAGCTGCCAAGCAGATGGCAGCAGCGGCCAACTCCCTCCCCAGCTCACATCAGTCGGAGGAGGATCTGCAGGCCCGACAGCAGGAGGAGCTGGCCTCCCTGCAGCAGCAGCTACAGCAGCTCTCCCTCAGCCTAGAGGAGGTGGGCGGAGACATGAGGCAGCTCACTGTGTCCATACATCAGGTGTCAGATGAGCTGAAGCAGAAAGAGCTGAGCAACACGGAGGAGGAGGACTCTGTGCGGGTAAAGAAGCAGACCATATACCTGCTGCCGGACGGGGAGAACAACCTGGCCAAGCTGCAGGCCCTAGTGGAGGGAAGTGCCGAGCGAGTGGTCAACCTGGCCGCCCAGTGGGAGAAACACAGAGCTCCACTTATCGATGAGCACCGCAGGCTCAAGGAGCTCTGCAGCAACCAAGCGATGGAGTCCTCCCGAAAGCTATCTGAAATCAAAGAGCTTCATGAAAAAATCAGTCAATCTGCGGAGGAGGCCAAGAAGAAGGAGGGACTGTATAAACAACTGATAACAGAGTTTGAGAATCTCCCCAAAGATATCTCCCGCTCAGCGTACACTGCCAGGATCCTGGAGATCGTTGGCAACATCCGGAAACAGAAGGAAGAAATTACAAAGATTCTGTCTGACACTAAGGAGCTGCAAAAAGAGATTAACAGCCTGACTGGAAAACTGGACCGAACATTTGCTGTGACTGATGAGCTGGTCTTCAAGGATGCGAAAAAAGATGAGTCTGTCCGCAAATCCTACAAGTACCTGGCAGCCTTGCATGAGAACTGCACTCAGTTGATCCAAACTATTGAGGACACTGGCACAATCATGAgagagatcagagacctggaggaaCAGATTGAAACAGAGAATGGTAAAAAGACTGTAAGCAACCTGGAGAAGATCCTGGAGGACTACAAAGCCATTCGCCAGGAGAACTCTGCTCTGGCTGCCAAGATCAGAGAGGCCTGACGTGACCCTCCTCAGCATGATGCACCGTAGTGGCCGCCTGACTTGTCTGCTGGTCAAACTGACCGGTAGGTAGCATGCCCTCGAGACtgcctgtcctgtgtgtgtggaaCCAAGAAAGCACACTCCCATCTCGTCTCAAGACTTTCAACGCTTTCCTTCCTCCAACGTCATTTTTGGTTTTGCCTTCTGGGAGCACTGACAGCATATGGGGAGGGGAGATTGAATTTTGTACTGAAAATACTTAATTTTTTATGCACAAACCTTGGCTGATCAAAATCCATGCAGGATATAGAAAAGAGTTGTGTGATGCATAAAACAGTGATGAATTAATTATACTTGCCTTGCATCCCTGGTGTCCCATACTGATTCCATATTGATTCCACACAATCAATACTTTCTATTAGAAATGTGTAGTAGATCTTATCTCAATTGCAGTAGTTCTGATTGACTCATCAAGTGAATGTCTTGATGGTCGAGGTACAATTACACAAGCACTGATTGACATCTCTATGAATTTGGGTACATCAATCATTACCTACATTCTTAGACCAGTCATTGGAAATGAATGATTGATTTAGAACTCACGAGGTTGTTTGAATGTCATCCAGTCCTAGACTAGTAAACCTAGTGATTGTAAGTGATTCTGCTGAATCTGGTGAGGTTAGTGTGCTTTGAAAATGTCAGGTCTATGTTCCCTCAAAGTGCACCATGTTTCAGAAGTAACATGCACCATCACAATCCCCCTGAGTAATGGTTGCTGTACAAATGACCAGCTTtaagcttttttttttactgtacaaTACTTCCAAGTTATCTTGATACTACTTTGAAATGCAATGCAGTTCCATGTGTTAAGGTGAATTTCTTCATTTCTCCCCCCTCCCATTCCACAGACAAATGCAAGGGCTAGGTATGGCCTAAGATACCGTTGTGCAGAAAGAAATCCATGCCATATTTTGTCTTACAAACTGGAATCGATAAGGAGATTACTAGGTTTGTCCTTTCTAGGTCATGCTCATGCCTTGAAATCAAATGCTGCTTTTGTCTCTCTTTTGCTGAGTATTATTTGGCTTAGGGTAAATTGCCTCACCTTTTGGGCATTGATCTCCTGAAATGGCCAAGATTAGATAACAAATAAACTGCATTGATTGACAATGATTCATGCAAAACTTGTATAAAAATGATACCACAATGTTAGTCAGCAgcaaattaacatttaaatgaATGTCCTGTGCTATGTTGTGTTTTCTTTCACACGTTAAGGTTTAGTTAATGTTGAAATGCTGAAACGTTTTTTGCATCACGTTCATATTCTGGCCTTTTTTCCATGATCCTGTGGGAATGCCTGTTGTACTGGCTCTttagccctgtttatacctggtgccAACAtgtgtcctttgtcctgatcttgtcaaCTTTCTAATTGTGCCACATTTTTGGCGGGTGTAGACGATTAAAAGACACATTGATCTCTGATCAGATCGTCCTGATCACCTCGGCAGGCACGCATTGGCTGTGTTCACACAGGCAATCAAATTCTGATCTTTTACCCATGTATTAACAAAAGAGcttatctgattggtcaaaatgccAATTAGGGAAAAAAAGTATTATGCTGCCTGTGTAAGCACCGCCATTGTGTCTGGATATCAGTCAAGTGTTAACAGATCCTGATGGTCAAACTAAATCATCATACTGGCCTCTAAGATCATTGACACTGAGCACCATTGACTTATGGCATCAGCAATtgtcttaaaataaatacattcatatTGTTTTGAAAGAA

Function

GO: NA

KEGG:

id description
K23343 CCDC22; coiled-coil domain-containing protein 22

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917305 lncRNA upstream 17829 42884685 ~ 42885267 (+) True G806141
TU916867 lncRNA upstream 223747 42679144 ~ 42679349 (+) True G805788
TU916865 lncRNA upstream 225260 42677536 ~ 42677836 (+) True G805786
TU916860 lncRNA upstream 237113 42665769 ~ 42665983 (+) True G805781
TU916858 lncRNA upstream 238645 42661815 ~ 42664451 (+) True G805779
TU917415 lncRNA downstream 7845 42919532 ~ 42920390 (+) True G806227
TU917434 lncRNA downstream 58088 42969775 ~ 42970005 (+) True G806243
TU917435 lncRNA downstream 58826 42970513 ~ 42970739 (+) True G806244
TU917436 lncRNA downstream 59136 42970823 ~ 42971089 (+) True G806245
TU917437 lncRNA downstream 60566 42972253 ~ 42972528 (+) True G806246
XM_021615788.2 mRNA upstream 35794 42753276 ~ 42867302 (+) False LOC110532144
XM_036988058.1 mRNA upstream 35794 42753276 ~ 42867302 (+) False LOC110532144
XM_036988059.1 mRNA upstream 35794 42753276 ~ 42867302 (+) False LOC110532144
XM_036988061.1 mRNA upstream 35794 42810941 ~ 42867302 (+) True LOC110532144
XM_021614385.2 mRNA upstream 155343 42733559 ~ 42747753 (+) False foxp3-1
XM_021615791.2 mRNA downstream 696 42912383 ~ 42930990 (+) True LOC110532148
XM_036988062.1 mRNA downstream 23577 42935264 ~ 42963028 (+) False LOC110532149
XM_021615792.2 mRNA downstream 29663 42941350 ~ 42963028 (+) False LOC110532149
XM_021615793.2 mRNA downstream 29663 42941350 ~ 42963028 (+) True LOC110532149
XM_021614416.2 mRNA downstream 353830 43265517 ~ 43275006 (+) True LOC110531181
TU916660 other upstream 554310 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 570658 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 878693 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1467673 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 1881594 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 1284028 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1530975 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 3223044 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 5070314 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5633767 48545454 ~ 48570593 (+) True G812688

Expression Profile