RNA id: XM_021615818.1


Basic Information

Item Value
RNA id XM_021615818.1
length 1454
RNA type mRNA
GC content 0.54
exon number 8
gene id ybx1
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 43329368 ~ 43335690 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGTGGGCGGGACTATGGCTGGGGATAGTCCACTGCATAGTTTTTCGTTCCTCCCAGTTCGATCGGCAACGGGAGAGAGGAAAGTTGAGAGCCCGAAGGCAGCAGCCCCCACCACCGCCGGCCCAGGTTACCATCTAGCACCGGGAAATACACTAGAGAGCCACCGCCGGCATTACCAACCAGAAACCATGAGCAGCGAGGCCGAGACACAACAACCGCCGGAGCCTGCTGTGGATTCGGAGAGCCCACCCAGCCCGCCAGCTACAGCTTCCGCGGGGGATAAGAAGGTCATCGCAACTAAGGTTTTGGGTACAGTCAAATGGTTCAACGTCAGAAATGGATACGGGTTCATCAACAGGAATGACACAAAGGAAGACGTCTTTGTCCACCAGACTGCCATAAAGAAAAACAACCCAAAGAAATACCTTCGCAGTGTTGGAGATGGCGAAACTGTGGAGTTTGATGTGGTTGAGGGGGAGAAGGGAGCAGAGGCAGCCAATGTGACCGGCCCAGCGGGTGTCCCAGTCCAGGGGAGCAAGTATGCAGCTGACCGGAACCGCTACAGGCGGTACCCCCGCAGGAGGGGCCCAGCCCGTGACGGCGAATACCCGGACAACTACCAGAGTGACGGCGAGGGTGAAGGAGAGCGCCCACCCCGCAAGAGCCGCGAGAGTGCTGAGAGTGCCCCAGAAGGAGAGATGCAGCCCCAGCAGCGCAGGCCCCCCTTCCCCGGGAGACGGCGCTACCCCCCATACTTTGGTGGCGAAGGTGACGAGAACCAGGGAGGTCCAGACCAGGGCAACAAACCAATGAGACAGAACTACTACAGAGGCTTCCGACCAAGCAGGGGTGGCGGTCCACCCCGTCCCAGACCGGTGCGGGACGGCGATGGGGAAAACAAGGAGAACCAGGATGGTGATGGTGAGAACCAGGAGCCCCGCCAGCGCCGCTACCGCCGAAACTTCAACTATCGCCGCAGACGCCCACAGACTGGCGGCAAGCCCCAGGATGGCAAGGAGGCCAAGACTGACGGCGAACCATCTACAGAGAAAACGCCCGCTCCCGCGGCCGAGCAGGGCGGGGCTGAGTAGAAACTGCCGGCATACCATCTCTACCATCGTCCGGTTGTCATCAAGAAGAAACAAAGATCTGAGCAATAAGAAACAGATTTGACTTGACGATCGTCTTAAGCTTGCACCATGAATTTGACCAGATTACCACCGATTGCCTGCAGAATCTATGCAGACCTGTTTTGTTCCATTATTTTTGTGAcagctaaaaaaaaaagtttgggaaACGGCAGATGTTTTTCTAAAAATCGGTCCTAAGTTTTTACACCAAATGGTTTTTAAAAGTAATTTGATATCTGGTCAGTTGACATTTTTAAATAACTTTTTATGTATTCAAACATGAATTTTAACAACGCAAGCTCAAATAAAAAGTCAAAGGAGAA

Function

GO: NA

KEGG:

id description
K09276 YBX1, NSEP1; Y-box-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU917670 lncRNA upstream 6690 43320051 ~ 43322678 (+) True G806458
TU917615 lncRNA upstream 88745 43240263 ~ 43240623 (+) True G806407
TU917614 lncRNA upstream 89544 43239616 ~ 43239824 (+) True G806406
TU917613 lncRNA upstream 90449 43238702 ~ 43238919 (+) True G806405
TU917612 lncRNA upstream 90682 43237853 ~ 43238686 (+) True G806404
TU917682 lncRNA downstream 27974 43363664 ~ 43364473 (+) True G806470
TU917726 lncRNA downstream 99970 43435660 ~ 43435872 (+) True G806510
TU917729 lncRNA downstream 105468 43441158 ~ 43441383 (+) True G806513
TU918125 lncRNA downstream 153187 43488877 ~ 43489132 (+) True G806884
TU918131 lncRNA downstream 157627 43493317 ~ 43493848 (+) True G806890
XM_021615812.2 mRNA upstream 5559 43288149 ~ 43323809 (+) False ppih
XM_021615814.2 mRNA upstream 5559 43288156 ~ 43323809 (+) False ppih
XM_021615815.2 mRNA upstream 5559 43288205 ~ 43323809 (+) False ppih
XM_036988067.1 mRNA upstream 5559 43300999 ~ 43323809 (+) False ppih
XM_021615813.2 mRNA upstream 5562 43311165 ~ 43323806 (+) True ppih
XM_036988074.1 mRNA downstream 173288 43508978 ~ 43579823 (+) False acot7
XM_036988072.1 mRNA downstream 173289 43508979 ~ 43579823 (+) False acot7
XM_036988071.1 mRNA downstream 173293 43508983 ~ 43579823 (+) False acot7
XM_036988070.1 mRNA downstream 173294 43508984 ~ 43579823 (+) False acot7
XM_036988073.1 mRNA downstream 173294 43508984 ~ 43579823 (+) False acot7
TU916660 other upstream 980582 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 996930 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 1304965 42021859 ~ 42024403 (+) True LOC110532114
TU914750 other upstream 1893945 41434884 ~ 41435423 (+) False LOC110532096
TU914604 other upstream 2307866 41020936 ~ 41021502 (+) True G803728
TU919016 other downstream 860025 44195715 ~ 44196041 (+) True G807677
TU919191 other downstream 1106972 44442662 ~ 44453077 (+) True G807841
TU921250 other downstream 2799041 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 4646311 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 5209764 48545454 ~ 48570593 (+) True G812688

Expression Profile