RNA id: XM_036988113.1


Basic Information

Item Value
RNA id XM_036988113.1
length 8645
RNA type mRNA
GC content 0.53
exon number 39
gene id agrn
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44511053 ~ 44790843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCCAGCCCTTTTCTTCTCTCCCAGCCGGCTTGCAGCGAGGCAGCTCAGGTCGCGCACGCAGCAGACGCATGAGATTTGTCTGAAATTGAGAGCTTTGTGGTCGGTAGGGAAGTTAGGAGAAGGCTTATTCGCCTAAATAGCGAGTATTGCTGCGAAAACAATTTGTAGCCTACTTTGTGTCGCAGAGAATTGATTTAGTCTGTTACCCGTTTTCGTGACCATGGTTTCACAACGGAGACCAACTCACTTGTACGGGTGGGCATTGATGATAGTCGCCGTTTTCTGTCAACGATGTCACGGAAGTTGTCCGGAGAAAGACTTGGAGAAAAGGGAAGAGGAGGCGAACGTAGTTTTGACTGGTACCGTTGAAGAAATCATGAACATGGACCCAGTGCATAATACATACTCGTGCAAGGTGAGGGTATGGCGGTACCTGAAAGGTAAGACCATGGTCAACGGCGAGGTTCTTCTGGACGGCGGCAACAAGGTGATGATCGGCGGCTTCGGGGACCCTGTGATATGCGACAACCAGGTTGCCACTGGCGACACGCGCATTTTCTTTGTCAACCTGGCCCCGGAGTACATGTGGCCAGCACATAAGAACGAGCTGATGCTCAACTCCAGCCTGATGAGGATTACCCTGCGTAACCTGGAGGAGGTGGAGCACTGTGTGGACGACCATAGAATGATCAATGCAGACAAACCTGTTCACTTCACGCCGGCCCAGCCTCCTGATGGTTGTAGAGGTATGCTGTGCGGCTTCGGGGCGGTGTGTGAGCGTGAAGCGACTGACCCCTCTAAGGCGGAGTGTGTATGCAAGAAGATGGTTTGTCCGTCGGTTGTGGCGCCCGTGTGCGGCTCAGACTCCTCCACCTACTCCAACGAGTGCGAGCTGGAGAAGGCCCAGTGTAACACGCAGCGACGCATCAAGGTGCTGCGCAAGGGACCCTGTGCCCTGAAGGATCCATGCAGCGAGGTGATCTGCAGTTACGGCAGCACCTGCATCCAGTCATCGGACGGCCTGTCGGCCAAGTGCATGTGCCCGCTGAGCTGCGAAGGCAAGCCCGAGCAGGTGATGTGTGGCAGCGATGGCCAGGACTACCGCAACGAGTGTGAGCTCCACAAGCAGGCCTGCCATACCAAGAAGAACATCCGCCTTCAGCGCCAGGGATCCTGCAACCCATGTAAAGGCCTCGAGAACAACCTGAACGTTGCATGCCGTGTAGAACCGCGCACCCACCAGCCCCTGAATATCCCCCGCCCGGAGTCCTGCCCTGCCGTCAATGAGCCACTGTGTGCCAGCGATGGGCAGACGTACGAGAGTGAGTGCCATATGAAGCGGACGGGCATGCAGAAGGGCATTGAACTCAAGAAGAACCACCCGGGCCGCTGCAAGAAACAAGaggagtgcagggaggagtgCAAGTTCAACGGCGTGTGCCAGGTGGAGCGTCTGGGCATGCGCTGCTCCTGCGAGCCCATCCAGTGCGATGGCACCTACAAGCCGCTATGCGGCAAGGACGGACACACCTACATCAATGACTGCGAGCGCCGGCGGGCTGAGTGCCAGGCCAAGGCCCATATTCCCGTCAAGCAGCAAGGCCCGTGTGATCTACACACTCCCAGCCCGTGCCTGGGGAAGGCCTGCGAGTTTGGGGCCGCGTGCGTGGTGAAGAACAACGAGCCCGTGTGCGAGTGCCATGGCGCCTGCCCCCAGATGCCCGACCTGGTGTGCGGCAGTGACGGCCACAGCTACGGCAGCCAGTGTGAGATGAAGGCCATGGGCTGCGCCCTGCAGAAGGAGATTCACATCCAGCACCGAGGACCCTGCGacGAGGCGTGTGCCAACTGTTCGTTTGGGGCGATCTGCGATGGGCAGTCTGGCCGCTGTGTGTGCCCGCAGGAGTGTGTGGAGTCCCACCAACCGGTGTGCGGCAGCGACGGCTCCACCTACGACAGCGAGTGTGAGCTCCACGTGCGTGCCTGTACCGAGCAGCTTGACCTGCGCGTGCTCGCCCAGGGAGAATGCAAGACGTGCGGTAGCGCCGTGTGTGCCTGGGGGGCCCGCTGCGTCCAGAACAAGTGCGAGTGCCCGCAATGCCAGGGCCAGGCCTTCTCGCCCGTGTGCGGCAGCGACGGCTTCACCTACGACAACACCTGCGAGCTGGGCGTGGCCTCCTGCGTCCTCAAAAAGAAGATTGAGGCGGCCAAGCCTGGCAGCTGCGACGAAGAGTGTGGTTCAGGAGGATCGGGGTCAGGTATTGAGAGCTGCGAACAGGACAGGTGTCGTACGTTTGGAGGATCCTGGGACGAGGACGCAGAGGACGACCGCTGTGTCTGTGACTTCGACTGCCATCGCGTGCCTCGCAACCCGGTGTGTGGCTCAAATGGGAAGACCTACAGCAACGAGTGTGAAATGAAGAAGGCTAGGTGTGAAAAGCAGGAGCACCTGCTGATCCAGAATCAGGGACCCTGTACAGCGATTTCGGCCACCTCTCCGACAAAACTGCCAGCGCAGGAACACTGCAGTCTGTCAGTCTATGGCTGTTGCCGTGACAACAAGACGGCGGCCCTTGGTGTGGGACTTGCCGGATGCCCCAGTACATGCCAGTGTAACCCGTACGGCTCCTACAAGGGGACTTGTGACCCGGGCAGCGGCCAGTGCTCCTGTAAGCCCGGCGTCGGGGGACAGAAGTGCGACCGCTGCGATCCAAGCTTCTGGAACTTCCGCGGCATCGTCACAGAGAACTTGAGCGGCTGCACACCGTGTAACTGCGACGCGGTGGGCTCGGTGAGGGACGACTGCGAGCAAATGTCAGGCCTGTGCTCCTGCAAGACGGGAGTGAAGGGCATGAAGTGCAACGTGTGCCCCGACGGCAGCCAGATGGGTATGAGCGGCTGCGACACAGGTGCCGATGCCCCAACTTCATGTGATGAGCTGGACTGCAAGTTTGGCGCGTTGTGTGACGAGGTCAATGGTCAAGCCCACTGCGAATGTCCCTCTCCCGACTGTGACGAGAAGAACAAGACCAAGGTGTGTGGCTCTGATGGGGTGACCTACGCTGACCAGTGCCAGCTGAGGACCATTGCCTGTAGGCAGGACAAGCACATCACAGTGGAACGCTTTGGCCAGTGTACAGACCCCACAGCTGCGGCCACCACCATCCCCACGGCGGAAGATCGCTCGTCGTGTGACAACACTCCCTTCGGCTGCTGTCCCGACGGCAAGACGGCCTCCAGCAGCCCTGAGGGAGCCAATTGCCCCCCCACCATGAGGTTCAGCGGCTTCCTGCACCTAGACCAGGTGGAGGGCCAGGAGGTCTTCTACACCCCTGAGATGGAGGATCCCAAGTCTGAGCTGTTTGGGGAGACGGCCAGGAGCATCGAGAGTGCTCTGAATGAGTTGTTCCGGAAGTCAGAGGTGCAGAAAGACTTCATGAGTGTCCGCGTCCGTAGCCTGGCTCCCAGCAACTCCATCTTGGCCTTCGTCGAGGCCCACTTTGACTCAGAGACCAAGTACACAGTGGAGGACATCGAGGGAGCCCTGCTCAAGCAGCTGAAGGCAGCCAAGGAGACAGCCATCATGGTGAAGAAGCCAGAGGAGGAGAACATTCGCTTCACCAACTACGgcctctcctccctcccctacttcaccacaaccaccactacaACGGCCACAGCTACCACCCCCACCGCCAGCCCCTCCCCCTTCATCACAAGCCGTCCCCCGGGCACCACCCGCCGCCCTTACACCAGCCGCCGGACCACCACCGCCCCCTCGCCAGTGACCACCCCGGcctccactactaccatcacccccCTCCACAGGACCAGGCCTGTGCCCCACCACACCAAGGCCCAGCGGCCCTGCGACTCCCACCCCTGCCGCCACGGGGGCACCTGCGAGGACGACGGTGCCGACTTCACCTGCATCTGCCCCGCCGGGAGAGGGGGTGCCGTCTGTGAGAAACTGATCAAGTACTTCATTCCGTCGTTCGGGGGTAAGTCCTACCTGGCCTTTGACACCATGAAGGCTTACCACACGGTCCGCATCGCCATGGAATTCAGGGCCGCCGAGATGACGGGCATCCTCCTCTTCAACGGCCAGGACGGCAAGAAGGACTTCCTGTCTCTCACCCTGGTCAACGGCAAGGTGGAGCTCAAGTTCAACACAGGTTCGGGCACAGGCACCTTGGTCAGCAAGGTCCAGGTTAAGCAGGGTCGCTGGCACCAGCTGGTAGTGACAAGGAACCGGCGCAACGCCATGCTGAGCGTGGACAATGAGACCCACATCGACGGCGCCAGCCCCCCCGGCACCGACGGCCTCAACCTGGACACTCACCTGTTCATCGGAGGGGTGCCCGAAGACATGATGACAGAtGTGAAGGAGAGGACCTCCATCGGTACGGGTCTGGTGGGCTGTGTGCGCATGCTGGACGTCAACAACCTGGTGTACAACCTGCAGGAGAAGAGTGGCAACGTGCTGTACGGCACCGGCGTGGGCGAGTGCGGCAACAATCCGTGCCAGCCTAACCCTTGCAAGAATGGCGCCCCATGCCAGGTCAAGGAGGCCGAGATGTTCCACTGCAAGTGCATCAACGGCTACTCCGGTCCGACGTGCGCCGACACCCACAACCCGTGCGAGCCCAACAGATGCCACCCCTTGTCCCAGTGCCAGGTGCAGCCGGAGGGAGGGTACAAGTGCGAGTGTCCCATGGGTCGCGAGGGACGCCACTGCGAGAAAGtGTCGGAGAAGAAAGGGGCCTACATGCCGTTCTTTAGCGGAGACTCTTACCTGGAGCTGAAGGGATTGCACACCTACGGTCACGATCTCCACCAAAAGGTCAGCATGACAGTGGTGCTCATGGCCAATGACTCCAACGGCATGATCTTCTACAGCGGCCAGAAGACGGACGGCAAAGGTgacttcatctccctctccctcaacgaCGGCATCCTGGAGTTCCGCTATGACCTGGGCAAGGGCCCCGCTGTCATCAGGAGTAAAGATAAGATCAAGATGGGCGTGTGGAACACAGTGAACCTGGAGCGGGCCAATCGAAAGGGAGAGATTAACATCAACGGAAAGGACCCAGTCAGAGGAGAGTCgccgAAATCACGGAAGaacCAACACACCGCTCTCAACCTGAAGGAGTCTCTGTTTGTGGGTGGTGCTCCTGATTTCAGCCGGCTAGCAAGGGCCGCCTCGCTCAAAGATGGCTTCAAGGGGACCATTCAGAAGATCACCCTGATGGGCACGCCCATCCTCCGGCAGGAGAACGCGCTGCACTCCAGTGACGTGGCCATGTTCGAGGGCCACTCCTGCAGCCGTGAGCCCTGCCACAACGGGGGTCGCTGCAACCCCCTGCTGGAGAgctatgagtgtgtgtgcctcCTCGGCTTCACAGGCACACACTGTCAGAACACCATCTTCGAGAAGTCCGCCGGGGAAACGGAGTCCATCGCCTTTGACGGCCGGACATTCATTGAGTACCACAACGCCGTCACCAAGAGCCAACTGACCAATGAGATTCCGGATCCAGAGTCACTGGAGAACCCGTCAGAGCAAAGTGAGAAAGCCCTGCTGGTGAACAAGTTTGAACTGAGCATTAAGACCGAGGCCACTCAGGGCCTGGTGCTGTGGGTTGGTAAGGGCGTGGAGCGATCTGACTACATCGCCCTGGCGGTGGTGGACGGCCGTGTGCAGATGACCTACGACCTGGGCTCCAAGCCTGTGGTGCTGCGCTCGACGGTCCGCATCAACACCAACCGCTGGATCCACATCAAGGCCAGCAGAGCACTTAGGGACGGCTCTCTCCAGGTGGGCAACGAGGCAGCGGTCACAGGGTCGTCGCCCCTGGCAGCCACTCAGCTGGACACAGACGGAGCCCTCTGGTTGGGTGGCTTGGAGGAGTTGGCTGTGGCCCGGAGACTGCCTAAGGCCTACAGCACAGGTTTTGTGGGCTGTGTAAAGGATGTCGCGGTGGACGGCGTGGAGCTCCACCTGGTGGAGGACGCCCTGAACAGCCCCAAAATATTACACTGTTCCGCCTCTGGCACAGCCGCCACGGCCAAAAAATAGCCTGGCTAAAATCACTCCCTCCATAAACGCCATGTCTACTGCTgtaattattttatatttttgtatacttttcattgctttttatattgaaaataaaaagaatacgttgttttaattttttttttttttatatatatatttttttgttttctgcGCCTCCTGTTCATTCATTATCCCCGCCCTGAAACGCAGGTGTACATACCGTACATATACGCGTACTTTTGTGTGACGTCGCGAGACAAGTGTAAGCTGTATTcattgtgttgttttgttgttttaaaACAAACATGAACAAAACCTCTCCCTCGCTCATTACTTGAACACTGGTGAATCACATTGGTGCTCTCTATTATTTCCTTGTCTTGATGCCATATCATTCACTACCACACAACACAGCCTATAGAAATACATACAAACATTCCCCTGTGAGATAAATGCAGTCGAGACACACTGCTGTTTCCTTGGTCATTGTCATTAGAGCACACTGTTACAAAAGGGTTTTTTAAATCATTTTGCGACGGAAAATGAAAAGGGGCATGTTTTATTGGGCGTGTCTGTTTTCTTCCGTTTtgtgcctaatgaacaggacAATGGTATCCTAGAAGCATCTGCTTGTAACTAGTAGGGCTGCTCAGAACGAACTTCTGAAACCGCTTAATCAAACTCCTCAAACAGCGCAAATGCTCTACATTGCCTCTCAATCAACGACTTGAGTTTTGAAATGATTCGCAAACCCCCAGAGCGGAACAAAAACAAAGTGCCCTGCATTCAAGGACAACACACATATCATTCCACAACATGCATCAATCAAGAAATGTAATAATAATTGaattaaataaatgtaataaatatagaCTATATAAATACCTGAGACTGTGAATATGTAAGATTGGTTCTCTTCTCAAGAATTGTGAATCTCATGTATTGTGCTTTCTATTTTACAATCAGGATGACCATTAGTTGCATGCAGTTTCTGCAGTGttggttttgttttgttttggtttcACTGTGTTGCCGGCCAAGTGGATTGATTACCTGTCGCAAACACGCGTTGTGTTTTACAAAACGGTTCAACTATCTGGTTCCACTGAGCTAGGATAACTATTTAATTTTGGTGGGGTCCTTTTTTGAGCACTTGTTTTTCTATTGGAGTTTGTTTTGCTGGACTTGGAATGGCTCAAAAggacaggttgttgttgttaccgCAACTGGCCTGGTGGGAGTGCTATAAGCTCAGGCTGAAGAGAGGACCGACCAAGAGGAAGAAGCGAGATACTGTATCATACCATAGGAGACAATAGGACCCTCAAATGCTCAGTCATGGAATGTTCAGTAGTCAATGAAATTCTTCAGTCTTTCAAACTTCAAAGTCCATTTTTTGATCAAATTGGAATGAAGACTGGGTTATACTTTCTCTTGCATTAAGAGTGATCCATCTCTTGCTGTTGGAAAAGTGATAATGTGATGAGTTGGGACATTTGGCagcaaaatgaggaaaaaaatagcAAACATAATCGCAATTACTAATAAACGTACTTATGCATGGGTTTGTATTGTCGAGATGAATTCTGTAACATCCAAAAACTCATAATGCAATGCAAAAACTAAACTGCAATGACTGACATAAACCCACTCTGTTTTGATATATAAGATACTTGGCAATATTATAAGAGAAAACAAATGCTTGTTCAAGGTTGAGTATCAGTGGTATTGTATTAGTTTGTTTAAGTTCTTCATTATTTTCCCCCCGCGATACAAAAACGGCCATTTTGTACAGCCCTGAAATTTGTAAGTGAAAATTTTGCAATGTGTAAAACTGTAGAGGTTATGTTTTTAGTGCTATACACTGGAAATAAGTCTGACTTGTCTGTTCACTACACACAATAATGATGTTCCTATGTCAATGAGGAGGGGAAGAGCATCGAAGTATATGGCTTTTGAGTGTAATCAAGGACTAGTGTCCATTCCAAGACCAGGaaccctgggtgtgtgtgtgtacaccactGTATTTACATGTTGTATTACTGTTGAATTTGACCTATTCCAGTAGTAGTTCATGAGCAGTGGGTTCCTGTGTTAGTGGCACTCAGAAGACAAGTGGCGCAGGCTCAAGAGTGAGACGACACAATCTAATGTCGGGGTGGTAAAAACTATCTATGAATTGCCTTAAAACAGGTCAGCGGCCTACAGGTTGACAAAGTCATTGTCCATACTGTTCTGTGCTCTTACTTTGGCCAGCATACTAGCCTCATCATCTTCATGTAAATTAATACATAATAATTATATTAATAATTCTCATACAAATCCTCAGAGGGACGCACAAATGGTCGACCTCTGGCTTTACATAAAATATACTATTTACTGTTTAAATCTATTTTCTGTTCCTTATTTATGTCTTCATGTGGATTCCGTCTGGCCTCTGTAAACTACTGTTTGATTGAGACACTCCTGAAGGGCAGTGCACTGAGTAAGAGTGGCATGACCTGATCATTACTAACTTTATTACCTTTGTCTTGTGTTCCTACCACCATGAAATAAAGTGTCAAACAAACAGACCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919408 lncRNA upstream 3576 44507248 ~ 44507477 (+) True G808032
TU919403 lncRNA upstream 7139 44503451 ~ 44503914 (+) True G808027
TU919381 lncRNA upstream 23323 44487456 ~ 44487730 (+) True G808005
TU919187 lncRNA upstream 60100 44438484 ~ 44450953 (+) False G807838
TU919570 lncRNA downstream 82549 44873392 ~ 44873630 (+) True G808184
TU919574 lncRNA downstream 87340 44878183 ~ 44878382 (+) True G808188
TU919585 lncRNA downstream 114262 44905105 ~ 44905329 (+) True G808199
TU919622 lncRNA downstream 157994 44948837 ~ 44949422 (+) True G808212
TU919655 lncRNA downstream 202972 44993815 ~ 44995385 (+) True G808244
XM_021615846.2 mRNA upstream 81952 44425014 ~ 44429101 (+) True LOC110532176
XR_002474917.2 mRNA upstream 476213 44034316 ~ 44034840 (+) True LOC110533015
XM_036988082.1 mRNA upstream 746191 43743468 ~ 43764862 (+) False wrap73
XM_036988083.1 mRNA upstream 746191 43743468 ~ 43764862 (+) True wrap73
XR_005053255.1 mRNA upstream 820412 43666812 ~ 43690641 (+) False LOC118966053
XM_021615849.2 mRNA downstream 9167 44800010 ~ 44857914 (+) False LOC110532179
XM_021615850.2 mRNA downstream 9169 44800012 ~ 44857914 (+) False LOC110532179
XM_021615851.2 mRNA downstream 12643 44803486 ~ 44857914 (+) True LOC110532179
XM_036988117.1 mRNA downstream 122121 44912964 ~ 44959122 (+) False LOC110532181
XM_021615853.2 mRNA downstream 122123 44912966 ~ 44959122 (+) False LOC110532181
TU919191 other upstream 57976 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 315012 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2162267 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2178615 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 2486650 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 1343888 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 3191158 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3754611 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 4168906 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 4212476 49003319 ~ 49006710 (+) True G813074

Expression Profile