RNA id: XM_021615849.2


Basic Information

Item Value
RNA id XM_021615849.2
length 5365
RNA type mRNA
GC content 0.46
exon number 16
gene id LOC110532179
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44800010 ~ 44857914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGCGATAACTTGCCTTTGGAGTTGAACATTGTTCAATAAACGCCCTCCTGAGTGCACGCTGTCCAACAGCGACACGGCGAAGACGTAAAGGGAACGTTCACTTTATTTGACTTTCCCTTCTCATTCGAAGACAGCTTTCTAAGACTGCTATGACGTCTCGCAGGTGGTTCCACCCCAACATCACCGGCATCGAGGCAGAGCAGCTCCTGTTGACGCGGGGGGTCCACGGCAGTTTCCTAGCCCGGCCGAGCAAGAGCAACCCGGGGGATTTTACTCTCTCTGTCAGgcggAGTGATGAGGTCACCCATATTAAGATCCAGAATTCAGGGGACTACTACGACCTCTATGGAGGGGAGAAGTTTGCCACGCTGGCAGAGCTGGTGCAGTACTACACAGAGCAGCACGACCTCctcagagagaggaatggagacgTCATCGAGCTCAAGTACCCACTCAACTGCAAAGACCCAACCTCCGAgagGTGGTACCACGGGCACCTCTCTGGGCGCGACGCTGAGAAGCTGCTTACGGACAAGGGCAAGCCTGGCAGTTTCCTGGTGCGCGAGAGCCAGAGTAAACCAGGTGACTTCGTGCTCTCTGTCCTCACCAACGAGGAGAAGCATGAAAATGTGGACCGCAAGACCAAGGTTACCCACGTCATGATCCGATACCAGCAGGATGGGAAGTATGACGTGGGCGGAGGAGAGAGGTTTGACACGCTAGCTGACCTGGTGGATCACTACAAGAAGAACCCCATGGTGGAGAAGAGCGGAATTGTTGTTCACCTCAAACAGCCCTTCAATGCCACCAGAATAAATGCAGCCAACATTGAGAACAGGGTAAAGGAGCTCAACAAAGTGGCGGACAACTCCGAGAAGCCCAAACAAGGGTTCTGGGAAGAGTTTGAGGTGCTACAGCAGCAGGAGTGTAAGCTCCTCTACCCCAGGAAAGAAGGACAGACCGCAGAGAACAAGAGTAAAAACAGATACAAGAACATCCTCCCTTTCGACACTACGCGGGTGGAGATCAGGGAAGCAGATGCAGATGTGCCTGGCTCAGACTACATCAATGCCAACTACATCAGAAGTATGCATGAAGAGGGCTGTCACGTGGAGGAGGGCAAGGTGTTCATCGCCACCCAGGGCTGCCTTCAGAACACTGTGGTGGACTTCTGGAAGATGGTCTACCAGGAGAACACGCACGTCATTGTCATGACCAccaaggagatggagagaggacggAACAAGTGTGTGCGCTACTGGCCTGACCTCAACGCCACTAAGGAGTTTGGGAAAGTGTGTGTGAAGAACGTTGAGGAGCGTCCGGCTCAGGACTACATCCTGAGGGAACTGGAGGTGACGCGTTTGGACCGGAGGGAGCCGATGAGGTATATCTGGCACTACCAGTACCTGAGCTGGCCTGACCACGGTGTTCCCAACGAGCCTGGGGGCGTGCTCAGCTTCCTGGAGCAGGTCAACCGCACGCAGACCACCATTCGAGACACCGGGCCCATTGTGGTCCACTGCAGTGCAGGAATCGGGAGAACAGGCACCATCATTGTCATTGATATTCTCATTGACATCATCAACAGACAAGgattaGACTGTGACATCGACATCCCTAAGACCATCCAGAGGGTTCGTCAGCAGCGGTCAGGCATGGTGCAGACAGAGGCCCAGTATAAGTTCATCTACATGGCTGTCCAGCAGTACATTGACACGGCACAgaagagactggaggaggagCAGAGGAATAAGACAAAGGAGAGGGAGTACTCCAATATCAAATACCCCCAGATGACCAACGCTCGGTCAAAACCCAACATGACCTGTGTGTCACGCTCCTCCTCTGTAGTGACGAACGAAGACCCGTCCGCTGTGTATGAGAACCTGAACATCAAGAACCCAAGTACCTCTGGGAACAGCAGTAACACCAGGAAGTAAAAGTTCAGCCACAGACCTCtgcctctctcaacctctctTTTCAACAGAGGTGCCGCTTCGCCAGCGCACCATGGGGGACCTGTGGAGCTCTGGCCCCTGACCCCCTGGCAGTGGAACCCCCCCTCCCGCTGCCCTGCTGGCTGTCTGGAGCCTCCCTCTCCAAGGATAGAGGGGTACAGCACAGTGCtcttgtccttctctctctctttctctttctctctctctttctctctctctctttctctttctctctctctttctctctctttctttctctcaatgACTTCAAGTCTCTACAACCTCTCCTGTCTACGGACAAAGTGCCTCGTCTACAGACATGTCTGTAACCCCCGTATTTGGTCCCACAGTTGTTCCGTCTCATCCCCCAACCCAACAAATATCCTTTGCTTATTTCTGTCGACTCTCGAACTAAATCGACGCGAGAAACAAACAATGGTGTACTCAATGTTCAAGTGATGTTTTGCTCCATCGTGTTCAACCATGAATGGGGTGGACGGGACAAGAATGGGTAAAGCTATGCCGTTTCTCTTTGCGCTGTTGGAATCCcaatctattctctctctctctctctctctcaattcaaagtgCTCACTCTCTCTGCTGGCTATCATCTACTTGAACCAAAGACTCTAGCGATGTTCTGTTTTTGCTAGCAGCAGTCATTACTGCAGCGTTGAGTAATGGCGGGGAAACATTGAAGTGATCTGCTACCACTGAGGCACTGGCACGGACAAGCAAAGTCCTTACACGACCCTTTCCCATGAAAGGCAAGAGGAAAGTCAGGATATTCCTAATGGGCCTTTGTCAGTGGGGAGCTGATTTGTTTATCTTATTGGTTCCACCGATGGTCTTTTGTGCCATGCTCATCTACTGTAGTGCTTCCACCATCACAGCTACTGAGAGCCTATTGAATCAAGGATAATGAGCTCCTCTCCGGACTCCATTTTGTTTCTTGTCCTGTGGTTGCTGGAAGGGGGGAGCTTGAAGCTCAAGGAGGGGGAGCTTGAAGCACCAATTTACTTGTGCAATTTTTCTATTTATTTAGTTTTAATCTGTGTCCTTTCAATTCAGTCTTGTTtcttttattgttattattggtgTGATTTTGTAATGTACAGGACATGGTTTTTAATGTTAGATCCAATTCCATTATTATCAGGCGACAAAAAGCACAATTCTCTGAATTTGCAGTTGCTTTGCAGATCCTGTTTTATGTGTGTGAAATTTGAGGTCAACGTCAAACGATAAAATCGGTCAGAtctgcagtctgtctctctctgtgtaggttataACTCCCGTTGGATTCTGCGACGGTTTTCCTCCTAATCGAATGGCATAATAAACAGGGTTAAACCTTTGCCAAGTGAGAGATAGACAAGGGTAGCAGAAAATGGGATAGGGGAGAAGAAATGTTAGGATGCCAGCCAGGCTGCCATCACTGAAGTCTTTATGAATATTACTGGGCCAGATGGCCTACAGCCCAAGATTAAAGAGTGGATTTGTCTCCAAAAAGTAATTTACAAGATGGTTATAATCCAGGCTTGACTTTGTTTGGGAGAGTAAAAACCGACATCAGtgatgatgtcataggaagggtGACACCACACAGCAAAGAGCCttcagttatatatatatatattgggcagtggcttctttcttaaCTATTCTTAGCATTTTGCATAAAAATCTAATGTCAAAGGTGTTCACACTGGATTTAGCCAGTGGCTCAATGATGTCATCCTTTTGAGCGACCCTGCTGGTTGGCTAGATAGAGGCTGTGCAGTGTCATCTGCTGGTTGTGCAGAGCTGTTCTTGTACATAGTGTTCAGGCCTTTCAACTAGGGCTTGACTACGTCATCCCTTGCTCATCCTAACACCAGTGCAGTAACTTTCCGCAATACTGAAAGTCTGATGTTTCAGTATTTCCCTTCAAATAATGTTTCAGTAAGTTCAGTAAGTGTTATAGGACACATATTTCGCTGCAGTTTAGTTGTTGATATAATACTCATGCTATAAGTGGTATGCTATAAATGGTATGCTATCCTGAAGTGAACATTGAAAATCTTTGTCAAATGAACCTTCTCCATTGTTCAACTGTCGGCCGAACTTTCAATCTTGTCCAATGAATGAAAATGGAAATGTTTAGTTTCTATTTTCTTAGGCCTAGATTCGATCAGATCAATCGTTAACCGGTGATAGCCGACACTcgcatagctgatgttttggcggtgtcggCAAGTGGAACTgcattggagctgtcaaatcggtgaAGAGCTGCTCTTGTGATCATTGTCACAAAGCCACCCCTGTCCCACTCGCGTTAGTTCAGAAGGAGAAAGTTTAGCCTACATAGAAATAATGAcgctcaaattgaaaatcattaaacaaaataatgaggatttctatcagcctaatcgaggtgtagattacGTCTCACATTCCAGTCTTCGAACTCTTAATGTgactccgtgcagccaatggcaatgtccgctttaTGTATAATGATAGGAGAACACTTATgcatttgacagctctaacgctGTTCCACCTACAGCACTGCCAAAATTACTACTGTGTGGATGTCGGCTAAATCGGATGTGATTGATTAGAGTCCTTTAATTATGTTGCACTGTTGTTGAtgatttttttattgtatttcactTTGCCTCTAAGGGTCAACTTTGTATGATGTGGTGAAACATTGAGGGGTGAATCCTACTTAGCTTAAAGATGAATTTTCATTGAGTTATGCATTGATGTCAGTGGGAGACGATGTGAAAATTTGACTGAAGTGGAAATTAGTGTTCGCTCTTAACACTTCAATACTTGAAATTCTATTCAAAATGGCTAAATCCTGTAGCTGCAGACTTGTGATCTGTGACTGTCAGGATGCCCATTGGCTGTTTTAaaagagtacagtatgttgacAGTCTGCTAGAATTATGACATCAGTGTTGTAAATTTAATTTTCATTTACTGAGGTGTTTCGAATTTTACATTTCCTGTTGGTGCATTTTATATTGTGTAAGGTTATTTGtttgattattgttattattttagtTTCTATTTGGTGTTATTACACCGTTGATAATAACATAATGATAATGAATTGTCAGTTAAGCAGGTGTTCTTGAAAGTATACAGAAATTATATGAGTTATCTTATTTCTGCTCCTTAATTTACTTGAATATGATGTTGACATAGTTGGTTGCGATATGCCTGATTTGAGTAGTGGTATACTGACTGTTCCTGTATTCAGGTGAAGACTGTTTTTCCCTCTTGCACTGGCTCAGCCTTAACGCCTTCTGTCCAGGCTTATAGCGCTGATGCAATGAGAATGTCAGAAATGACAACAAAATGATTCAAAATGTAATAGTTTAATAAAAATCTATGAATGAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919529 lncRNA upstream 17589 44781494 ~ 44782421 (+) True G808145
TU919408 lncRNA upstream 292533 44507248 ~ 44507477 (+) True G808032
TU919403 lncRNA upstream 296096 44503451 ~ 44503914 (+) True G808027
TU919381 lncRNA upstream 312280 44487456 ~ 44487730 (+) True G808005
TU919187 lncRNA upstream 349057 44438484 ~ 44450953 (+) False G807838
TU919570 lncRNA downstream 15478 44873392 ~ 44873630 (+) True G808184
TU919574 lncRNA downstream 20269 44878183 ~ 44878382 (+) True G808188
TU919585 lncRNA downstream 47191 44905105 ~ 44905329 (+) True G808199
TU919622 lncRNA downstream 90923 44948837 ~ 44949422 (+) True G808212
TU919655 lncRNA downstream 135901 44993815 ~ 44995385 (+) True G808244
XM_036988106.1 mRNA upstream 9167 44511053 ~ 44790843 (+) False agrn
XM_036988107.1 mRNA upstream 9167 44511053 ~ 44790843 (+) False agrn
XM_036988108.1 mRNA upstream 9167 44511053 ~ 44790843 (+) False agrn
XM_036988109.1 mRNA upstream 9167 44511053 ~ 44790843 (+) False agrn
XM_036988110.1 mRNA upstream 9167 44511053 ~ 44790843 (+) False agrn
XM_036988117.1 mRNA downstream 55050 44912964 ~ 44959122 (+) False LOC110532181
XM_021615853.2 mRNA downstream 55052 44912966 ~ 44959122 (+) False LOC110532181
XM_021615854.2 mRNA downstream 55052 44912966 ~ 44959122 (+) False LOC110532181
XM_036988118.1 mRNA downstream 55052 44912966 ~ 44959122 (+) False LOC110532181
XM_021615859.2 mRNA downstream 55053 44912967 ~ 44959122 (+) True LOC110532181
TU919191 other upstream 346933 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 603969 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2451224 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2467572 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 2775607 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 1276817 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 3124087 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3687540 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 4101835 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 4145405 49003319 ~ 49006710 (+) True G813074

Expression Profile