RNA id: XM_021615851.2


Basic Information

Item Value
RNA id XM_021615851.2
length 5519
RNA type mRNA
GC content 0.45
exon number 16
gene id LOC110532179
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44800010 ~ 44857914 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgctcattcaccctctaaatggcacacatgcaAAATCCTTGTCTtgattgtctcaaggcttaaacatctttCTTTTAACATGTCTCTagccttcatctacactgattggagtggatttaacaggtgacatcaataaagaatcatagcattcacctgtattcacctggtcagtctgtgtcatggaaagagcaggtgttcctaatgttttgtcaaACAGTATAAATACTCaatgcaagcagaaagaaaaaTAAACACATTCATCAATCAGTAagctcaatcagctttctgaattgccctagaaGCACCAGAAAATCAAATGTGGTTCCACCCCAACATCACCGGCATCGAGGCAGAGCAGCTCCTGTTGACGCGGGGGGTCCACGGCAGTTTCCTAGCCCGGCCGAGCAAGAGCAACCCGGGGGATTTTACTCTCTCTGTCAGgcggAGTGATGAGGTCACCCATATTAAGATCCAGAATTCAGGGGACTACTACGACCTCTATGGAGGGGAGAAGTTTGCCACGCTGGCAGAGCTGGTGCAGTACTACACAGAGCAGCACGACCTCctcagagagaggaatggagacgTCATCGAGCTCAAGTACCCACTCAACTGCAAAGACCCAACCTCCGAgagGTGGTACCACGGGCACCTCTCTGGGCGCGACGCTGAGAAGCTGCTTACGGACAAGGGCAAGCCTGGCAGTTTCCTGGTGCGCGAGAGCCAGAGTAAACCAGGTGACTTCGTGCTCTCTGTCCTCACCAACGAGGAGAAGCATGAAAATGTGGACCGCAAGACCAAGGTTACCCACGTCATGATCCGATACCAGCAGGATGGGAAGTATGACGTGGGCGGAGGAGAGAGGTTTGACACGCTAGCTGACCTGGTGGATCACTACAAGAAGAACCCCATGGTGGAGAAGAGCGGAATTGTTGTTCACCTCAAACAGCCCTTCAATGCCACCAGAATAAATGCAGCCAACATTGAGAACAGGGTAAAGGAGCTCAACAAAGTGGCGGACAACTCCGAGAAGCCCAAACAAGGGTTCTGGGAAGAGTTTGAGGTGCTACAGCAGCAGGAGTGTAAGCTCCTCTACCCCAGGAAAGAAGGACAGACCGCAGAGAACAAGAGTAAAAACAGATACAAGAACATCCTCCCTTTCGACACTACGCGGGTGGAGATCAGGGAAGCAGATGCAGATGTGCCTGGCTCAGACTACATCAATGCCAACTACATCAGAAGTATGCATGAAGAGGGCTGTCACGTGGAGGAGGGCAAGGTGTTCATCGCCACCCAGGGCTGCCTTCAGAACACTGTGGTGGACTTCTGGAAGATGGTCTACCAGGAGAACACGCACGTCATTGTCATGACCAccaaggagatggagagaggacggAACAAGTGTGTGCGCTACTGGCCTGACCTCAACGCCACTAAGGAGTTTGGGAAAGTGTGTGTGAAGAACGTTGAGGAGCGTCCGGCTCAGGACTACATCCTGAGGGAACTGGAGGTGACGCGTTTGGACCGGAGGGAGCCGATGAGGTATATCTGGCACTACCAGTACCTGAGCTGGCCTGACCACGGTGTTCCCAACGAGCCTGGGGGCGTGCTCAGCTTCCTGGAGCAGGTCAACCGCACGCAGACCACCATTCGAGACACCGGGCCCATTGTGGTCCACTGCAGTGCAGGAATCGGGAGAACAGGCACCATCATTGTCATTGATATTCTCATTGACATCATCAACAGACAAGgattaGACTGTGACATCGACATCCCTAAGACCATCCAGAGGGTTCGTCAGCAGCGGTCAGGCATGGTGCAGACAGAGGCCCAGTATAAGTTCATCTACATGGCTGTCCAGCAGTACATTGACACGGCACAgaagagactggaggaggagCAGAGGAATAAGACAAAGGAGAGGGAGTACTCCAATATCAAATACCCCCAGATGACCAACGCTCGGTCAAAACCCAACATGACCTGTGTGTCACGCTCCTCCTCTGTAGTGACGAACGAAGACCCGTCCGCTGTGTATGAGAACCTGAACATCAAGAACCCAAGTACCTCTGGGAACAGCAGTAACACCAGGAAGTAAAAGTTCAGCCACAGACCTCtgcctctctcaacctctctTTTCAACAGAGGTGCCGCTTCGCCAGCGCACCATGGGGGACCTGTGGAGCTCTGGCCCCTGACCCCCTGGCAGTGGAACCCCCCCTCCCGCTGCCCTGCTGGCTGTCTGGAGCCTCCCTCTCCAAGGATAGAGGGGTACAGCACAGTGCtcttgtccttctctctctctttctctttctctctctctttctctctctctctttctctttctctctctctttctctctctttctttctctcaatgACTTCAAGTCTCTACAACCTCTCCTGTCTACGGACAAAGTGCCTCGTCTACAGACATGTCTGTAACCCCCGTATTTGGTCCCACAGTTGTTCCGTCTCATCCCCCAACCCAACAAATATCCTTTGCTTATTTCTGTCGACTCTCGAACTAAATCGACGCGAGAAACAAACAATGGTGTACTCAATGTTCAAGTGATGTTTTGCTCCATCGTGTTCAACCATGAATGGGGTGGACGGGACAAGAATGGGTAAAGCTATGCCGTTTCTCTTTGCGCTGTTGGAATCCcaatctattctctctctctctctctctctcaattcaaagtgCTCACTCTCTCTGCTGGCTATCATCTACTTGAACCAAAGACTCTAGCGATGTTCTGTTTTTGCTAGCAGCAGTCATTACTGCAGCGTTGAGTAATGGCGGGGAAACATTGAAGTGATCTGCTACCACTGAGGCACTGGCACGGACAAGCAAAGTCCTTACACGACCCTTTCCCATGAAAGGCAAGAGGAAAGTCAGGATATTCCTAATGGGCCTTTGTCAGTGGGGAGCTGATTTGTTTATCTTATTGGTTCCACCGATGGTCTTTTGTGCCATGCTCATCTACTGTAGTGCTTCCACCATCACAGCTACTGAGAGCCTATTGAATCAAGGATAATGAGCTCCTCTCCGGACTCCATTTTGTTTCTTGTCCTGTGGTTGCTGGAAGGGGGGAGCTTGAAGCTCAAGGAGGGGGAGCTTGAAGCACCAATTTACTTGTGCAATTTTTCTATTTATTTAGTTTTAATCTGTGTCCTTTCAATTCAGTCTTGTTtcttttattgttattattggtgTGATTTTGTAATGTACAGGACATGGTTTTTAATGTTAGATCCAATTCCATTATTATCAGGCGACAAAAAGCACAATTCTCTGAATTTGCAGTTGCTTTGCAGATCCTGTTTTATGTGTGTGAAATTTGAGGTCAACGTCAAACGATAAAATCGGTCAGAtctgcagtctgtctctctctgtgtaggttataACTCCCGTTGGATTCTGCGACGGTTTTCCTCCTAATCGAATGGCATAATAAACAGGGTTAAACCTTTGCCAAGTGAGAGATAGACAAGGGTAGCAGAAAATGGGATAGGGGAGAAGAAATGTTAGGATGCCAGCCAGGCTGCCATCACTGAAGTCTTTATGAATATTACTGGGCCAGATGGCCTACAGCCCAAGATTAAAGAGTGGATTTGTCTCCAAAAAGTAATTTACAAGATGGTTATAATCCAGGCTTGACTTTGTTTGGGAGAGTAAAAACCGACATCAGtgatgatgtcataggaagggtGACACCACACAGCAAAGAGCCttcagttatatatatatatattgggcagtggcttctttcttaaCTATTCTTAGCATTTTGCATAAAAATCTAATGTCAAAGGTGTTCACACTGGATTTAGCCAGTGGCTCAATGATGTCATCCTTTTGAGCGACCCTGCTGGTTGGCTAGATAGAGGCTGTGCAGTGTCATCTGCTGGTTGTGCAGAGCTGTTCTTGTACATAGTGTTCAGGCCTTTCAACTAGGGCTTGACTACGTCATCCCTTGCTCATCCTAACACCAGTGCAGTAACTTTCCGCAATACTGAAAGTCTGATGTTTCAGTATTTCCCTTCAAATAATGTTTCAGTAAGTTCAGTAAGTGTTATAGGACACATATTTCGCTGCAGTTTAGTTGTTGATATAATACTCATGCTATAAGTGGTATGCTATAAATGGTATGCTATCCTGAAGTGAACATTGAAAATCTTTGTCAAATGAACCTTCTCCATTGTTCAACTGTCGGCCGAACTTTCAATCTTGTCCAATGAATGAAAATGGAAATGTTTAGTTTCTATTTTCTTAGGCCTAGATTCGATCAGATCAATCGTTAACCGGTGATAGCCGACACTcgcatagctgatgttttggcggtgtcggCAAGTGGAACTgcattggagctgtcaaatcggtgaAGAGCTGCTCTTGTGATCATTGTCACAAAGCCACCCCTGTCCCACTCGCGTTAGTTCAGAAGGAGAAAGTTTAGCCTACATAGAAATAATGAcgctcaaattgaaaatcattaaacaaaataatgaggatttctatcagcctaatcgaggtgtagattacGTCTCACATTCCAGTCTTCGAACTCTTAATGTgactccgtgcagccaatggcaatgtccgctttaTGTATAATGATAGGAGAACACTTATgcatttgacagctctaacgctGTTCCACCTACAGCACTGCCAAAATTACTACTGTGTGGATGTCGGCTAAATCGGATGTGATTGATTAGAGTCCTTTAATTATGTTGCACTGTTGTTGAtgatttttttattgtatttcactTTGCCTCTAAGGGTCAACTTTGTATGATGTGGTGAAACATTGAGGGGTGAATCCTACTTAGCTTAAAGATGAATTTTCATTGAGTTATGCATTGATGTCAGTGGGAGACGATGTGAAAATTTGACTGAAGTGGAAATTAGTGTTCGCTCTTAACACTTCAATACTTGAAATTCTATTCAAAATGGCTAAATCCTGTAGCTGCAGACTTGTGATCTGTGACTGTCAGGATGCCCATTGGCTGTTTTAaaagagtacagtatgttgacAGTCTGCTAGAATTATGACATCAGTGTTGTAAATTTAATTTTCATTTACTGAGGTGTTTCGAATTTTACATTTCCTGTTGGTGCATTTTATATTGTGTAAGGTTATTTGtttgattattgttattattttagtTTCTATTTGGTGTTATTACACCGTTGATAATAACATAATGATAATGAATTGTCAGTTAAGCAGGTGTTCTTGAAAGTATACAGAAATTATATGAGTTATCTTATTTCTGCTCCTTAATTTACTTGAATATGATGTTGACATAGTTGGTTGCGATATGCCTGATTTGAGTAGTGGTATACTGACTGTTCCTGTATTCAGGTGAAGACTGTTTTTCCCTCTTGCACTGGCTCAGCCTTAACGCCTTCTGTCCAGGCTTATAGCGCTGATGCAATGAGAATGTCAGAAATGACAACAAAATGATTCAAAATGTAATAGTTTAATAAAAATCTATGAATGAAA

Function

GO: NA

KEGG:

id description
K07293 PTPN11; tyrosine-protein phosphatase non-receptor type 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919529 lncRNA upstream 21065 44781494 ~ 44782421 (+) True G808145
TU919408 lncRNA upstream 296009 44507248 ~ 44507477 (+) True G808032
TU919403 lncRNA upstream 299572 44503451 ~ 44503914 (+) True G808027
TU919381 lncRNA upstream 315756 44487456 ~ 44487730 (+) True G808005
TU919188 lncRNA upstream 353830 44438484 ~ 44449656 (+) True G807838
TU919570 lncRNA downstream 15478 44873392 ~ 44873630 (+) True G808184
TU919574 lncRNA downstream 20269 44878183 ~ 44878382 (+) True G808188
TU919585 lncRNA downstream 47191 44905105 ~ 44905329 (+) True G808199
TU919622 lncRNA downstream 90923 44948837 ~ 44949422 (+) True G808212
TU919655 lncRNA downstream 135901 44993815 ~ 44995385 (+) True G808244
XM_036988111.1 mRNA upstream 12643 44511053 ~ 44790843 (+) False agrn
XM_036988117.1 mRNA downstream 55050 44912964 ~ 44959122 (+) False LOC110532181
XM_021615853.2 mRNA downstream 55052 44912966 ~ 44959122 (+) False LOC110532181
XM_021615854.2 mRNA downstream 55052 44912966 ~ 44959122 (+) False LOC110532181
XM_036988118.1 mRNA downstream 55052 44912966 ~ 44959122 (+) False LOC110532181
XM_021615859.2 mRNA downstream 55053 44912967 ~ 44959122 (+) True LOC110532181
TU919191 other upstream 350409 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 607445 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2454700 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2471048 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 2779083 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 1276817 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 3124087 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3687540 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 4101835 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 4145405 49003319 ~ 49006710 (+) True G813074

Expression Profile