RNA id: XM_036988118.1


Basic Information

Item Value
RNA id XM_036988118.1
length 7547
RNA type mRNA
GC content 0.51
exon number 31
gene id LOC110532181
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44912964 ~ 44959122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGGGCGCTCATTCAACATCGTCTTCCTCCGGTTGCCAATGACAGCAGTCAGCTGAGGATTTTGCATTACTTGATTCAGTGTAGCCGAAGCAGCACCGTAGTCCTCTAGCCTTGACATTGTTGGAGAATGCCTAAATTGGGATAGCTGGTGTTGTGAAGACAAGTCACCTTGTTATGAAAACCATTTTCCTTGGAGCAGGTGGAAACAGTAGAGTGGAGCCGCTACACAATGTACTCAGACTGGCGCTCGCTGCACCTAATGGTGCAGAGTGACCAGGGCCACCTCAGTGTCCTTCACACGTATCCTGGAGGCGTGGGGTTGGAGGTGGCCAACGCAGTGGTCAAACCCCTGGGGACGGCCGCCATCCCCATGGCCACCGAGAACATCCTCAAGACGGACAAAGAgGTGAAGTGGACCATGGAGGTACTGTGCTATGGCCTAACTCTTCCCCTGGAGGGGGACACGGTGAAGCTGTGTGTGGACGTATACACAGACTGGATGATGGCCCTGGTGATGCCCCGGGACTCCATTCCACAGCCGGTGGTGAAGGAGCCCAACCTGTACGTCCAGACCATCCTCAAACACCTCTACAACGTCTTCTTACCCAGGCCGGAGCAGTACAGTCTGAGCCACATCCGGCTGTGCCAGCAGGTGCTGACGGCAGTACAGAAGCTGGCCAGGGAGTCCGTCTCCATGGTGAGAGAGACCTGGGAGGTACTGCTGCTCTTCCTGCTCCGGATCAACGACACGCTGCTGGCCCCGCCCACCATTGGAGTGGGTGTGGCAGAGAAGCTGGCGGAGAAGCTGATGGCGGTGCTTTTTGAGGTGTGGCTGCTGGCGTGCGCCCGCTGCTTCCCCACGCCGCCCTACTGGAAGACTGCTCAGGAGATGCTGGCCAACTGGAGGCACCACCCACCCGTGGTGGAGCAGTGGAGCAGGGTGGCCTGCGCCCTCACCTCCAGGCTGTTACGGTTCACCCATGGCCCCTCGTTCCCCCCGTTTAAAGTCCCTGATGAGGATGCCAACCTGATTCCAGTAGAGATGGACAACGACTGTGTTGCCCAGACCTGGTTCCGCTTCCTCCACATGCTGAGCAACCCCGTGGATCTGAGCAACCCGACATTGGTTAGCACCACACCCAAGTTCCAGGAGCAGTTCCTCAACTCGAGCGGCATCCCCCATGAGGTAGTGCTGCACCCCTGCCTCAAGCAGCTTCCCCAGATCTTCTTCAGGGCCATGCGGGGGGTCAGCTGCCTGGTGGACGCCTTCCTGGGCATATCACGGCCCAGGGTCGACAGTGCCCCGCCCACACCGGTCAACAGACTGAGcatgtcccctccctcctccaacaACACCACGCCCCCACACAGCCGCAAGCAGCGACACACCGTGGTCACCAAAACCGCCAGCAAGAGTTTAACGGGCAGTGCAGCCCAGCCAGCCAAAGTGTCCGCGTCCCAGCAGCTGTCGTCGTCACCCACCATGCTGGCCAGCCCCACCCAGAGCAGTTGGGAGATGCAGCCGCTGCCCGCCCCAGCCAGGCCTAAGGTCAACAGCATCCTCAACCTCTTCGGTCAGTGGCTGTTTGACGCGGCGCTAGTGCACTGCAAGCTCCACAGCGGCCTCAGCCGAGACCCCAGCATGACTGCCATAGCCACTCAGGTGGGTCTGGAGCTGAGAAGGAAGGGATCCCAGATGTCCACCGACTCCATGGTGTCAAACCCCATGTTCGACACCAACGAGTTCCCCGAGAGCTACGAGGCGGGCCGTGCCGAGGCCTGCGGCACCCTGTGCCGCATCTTCTGCAGTAAGAAGACTGGAGAGGACATTCTCCCAGTCTACCTGTCCAGGTTCTACATGGTTCTGATCCAGGGCCTCCAGATCTCTGACTTCATCTGCAGGCCCGTGCTTTCCAGCATCATCCTcaactcctcctctctgttctgctctgaccTGAAGGGCGTCAACGTGGTGGTCCCCTACTTCATCTCAGCTCTGGAGACCATTCTGCCAGACAGGGAGCTGTCTAAATTCAAGCTGTACGTGAACCCCACTGACCTGAGGAGGGCTTCTATCCACATCCTACTGGCCATGCTGCCACTCCCACACCACTTTGGCAACGTCAAGTCCGAGGTTCTTCTGGAGGGGAAGTTCAGTGATGATGATGGGGCACTCCACGACCAGTCCCTTTCCTTCCTGTCCCTGAGGCTACGTCTTGTCAACGTCCTCATCGGAGCCCTGCAGACAGAGACGGACCCCAACAACACCCAGCTCATCCTAGGTGCAATGCTTAATATTGTTCAAGACTCTGCTCTGTTGGAGTCCATAGGTGCACAAACTGAAACGGGCAGTGTGGATGGGAGCCACGCGGGGCTGAAGGGCCACAGCCGCACCAGCAGTAGCTTCAGCTTTACTAGCGGGGGCAGCACTGGCACTGAGGCCACCAGCCCAGACTCAGAGCGCCCGGCCCAGGCGCTACTTCGGGACTATGATACTGCGGCGGGCCTCCTGGTGCGCAGCATACATCTGGTCACCCAGAGGCTCAACTCCCAGTGGAGGTCCGACATGAGCATCTCATTGGCCGCCCTGGAGCTGCTGGCTGGCCTGGCCAAGGTGAAGGCGTGTGTGGACTCTGCGGACCGTAAGCGTGCCGTCAGCTCAGTGTGTGGTTACATCGTGTACCAATGCAGCCGGCCAGCCCCCCTTCACTCCAGAGACCTCCACTCCATGATCGTAGCAGCcttccagtgtctgtgtgtgtggctgaccgAGCACCCAGACATGCTGGATGAGAAGGACTGTCTGATGGAGGTATTGGAAATTGTAGAGCTGGGTATCTCAGGCAGCAAGTCCAAACAGGAGCAGGAGGTGAGACACAAGGGAGAGAAGGAGCACAACCCCGCCTCCATGAGGGTCAAGGATGCAGCAGAGGCCACCCTCTCCTGTATTATGCAGGTCCTGGGGGCCTTCCCATCCCCAAGCGGCCCGGCCTCTACCTGCAGCCTGCTAAACGAGGACACTCTGATCCGCTACGCCCGGCTCAGCGCCACGGGCCCCAGCAACTTCCGCTACTTTGTCCTGGACAACTCGGTCATCCTGGCCATGCTGGAGCAGCCACTGGGCAATGAGCAGAGTGAGTGTGACCCCAGCCCGTCAGTGACGGTCCTAATCCGGGGCATGGCCGGCCGACACGCTTGGACTATGCAACTCTTCCACCAGCCCAGAGGAGCACGGGCCAACCAGAGGCAGGTGTTTGTCCCTGAGGGCCGCCCAGCGCCTAACAATGACGTGGGGATTCGCTACACTGTCAAGCAGAGGCCCTTCCCTGAGGAGGTGGACAAGATCCCCCTGGTCAAAGCCGACGTCAGCATCCCAGACCTGGACGACATCGTTAACAAAGAGGATGAAGCGAGTGTGACATACACACTGAAGAATAATCACCCACATCTGGGGATGCAGCATGATAGGCTGCGCAGCATGATGACCAAGCAGATTGAGTATGAGTGTTCCCTGGAGCGCCACAGCGAGGACGTCTGGAGTTCCAAGTCATTCCCAGACCCCCTGACTGACTGCAAACCCCCTCTGCCCGCCCAGGAGTTCCAGACAGcccgcctcttcctctctcacttcGGCTTCCTATCTCTAGAGGCACTGAAGGAACCGGGCAACAGCCGTTTACCCCCTCACCTCATCGGACTGGAGTCCTCAATGCCAGGGTTCTTTGATGACATCGCCTACTTGGACCTGTTGCCATGCCGACCTTTTGACACTGTCTTTGTGTTTTACGTGAGGGCGGGACAGAAAACCAGCCACGAGATCCTGAGGAACGTGGAGACGTCGTCCAGTGTCCAGCCCCACTTCCTGGAGTTCCTGCTGTCTCTGGGCTGGCCTGTGGATGTGGGCCGGCACCCCGGCTGGACCGGACACCTGGACACCAGCTGGTCCCTTAACTCCTGCAGCAGCGACAACGACTCACAACAGATAGAGGAGGCAGCTCCACCGGGGGACACGGGAGGTTCTGTATTCAACGGGGAGAAGAAGGTGCTCTACTACGCCGACGCTCTGACTGAGATCGCCTTTGTCGTTCCATCGCTGACAGACTCCGAGGATTCCTCGGTGCACAGTGACTCTACAGTGgaggcggacacacacacagacctgcctAGTTTAGTAAAACAACCCAAGCTAACACTGGAGCTCTTCCCCAACCACTCAGACAACCTAGCAGCTTCCCAAAGGcaTAATTCTATGGTGAAGACTAAGAGGTCCTCCACAGGAAAGACTGCCCCTCCCCTGGGGCCTGAGACTAAGGTGCTAGTGGTCTGGGTGGAGCGCTACGATGACATCGAGAACTTCCCTCTGTCTGATCTCTTGGCGGAAACCGGTACTGGTTTGGAGGCGAACAACAGCACTTCCTGCAGGTCTGGGCTCCTGGAGAAGGACATGCCCCTGATCTTCATCCACCCCCTAAAGACGGGTCTGTTCCGGGTCAGGCTCCACGGGGCCATGGGCAAGTTCAACATGGTCATCCCCCTGGTGGACGGCATGGTGGTCAGCCGCAGAGCACTAGGGTTCCTGGTGCGCCAAACGGTCATCAACGTGTGCCGGCGGAAGCGACTGGAGAGCGAGACGTACAGCCCGCCGCACGTGCGGCGCAAGCAGAAGATTGCAGACGTCGTGCACCGCTACCGCAACAAGCAGCTGGAGCCCGAGTTCTACACCTCACTCTTCCAAGACGTGGGGGAGGGGAGGCCAGTTcacctttgacctctcccctccctttgaaaaacactaacagacacacactctcacacacacacacacacacacagccccagattctctatatttatacagttctattttgttattTATGTCAAACGCTGCCATTGACGTCGAGAGCAGTGTCAAAAAAATTGTTACCAGGTGCAAGCAGTACATTTGTAGTACGAACACATCTGAGCCTGTCTTTTTGGTGGCTATTAAGCCCCAGTTATGCTCGGGACACTTGGCATTGAAAATATACTGCACATCCTTATCAGTCTACTCTATGCTTTGTGGCACCAGTTTCTGACACTATAATTTGCAATAGGATAATCTAATTTTGGTCTTTTTTTAATATTATGATGAAGAGTGGACAACGTTATTGGCCTTTTAATTCTCCATTTTAGAGTTTCTGTTTTTAATGAAGATGTAGCCTCAATGTAGATGGACCAGACTCCTAGTATAGGGTTACTTGATCATTTTACATGTATCATATCAATACagatggggagaggaaggagagactcTGGGATTTGGATGCAAATCTGGGATTTGGGCCGATAACGTGCGGGTGGTTGTGGTGAGAGATTTGGTGAACTGCAGTTGGATCAAGACATTTTACGCGAAGGATCCATATATTACTTTGAAAGTGTTTACATCTTATCTATAAAcgatcgtttaaaaaaaaaaagcattctcCTCTCATGTATCTGTCCAAAGTCTTCCATGTCATTGAGAAAATGGAGTTGAACATTGCAGCAATATTAGGCATTGGTCAGCTTACTTACTGAGTCTCAAAACATGGAAAAATAAGCAAAGACATTTAAAGGGGTACTTCACCCCCTTATCTAAATTCTTCTGTTTTCATACCAGTTTTAGGGTGTAgtggtgaactatccctttaatgttgGTCAGCTGCTAACTGAGAGATTGCATAGATATTGTTCTTACAATGAAGTAGACCAGTGTTATTCGTTCCAGCACTGAACCATTTTGACATATAGGTCATATTGCACTGTTTGTGTGAGACTGCAGATGTCAACATTGCATCTGAGGTGTTTCTGGTCTCGTCTGCAAGTCTAATCAGATCAGTCACTCCATCCCACGCAACGGCATGTCTATACTGGATGCGTGATGCAACACATGGAAGTGATGGAAGATGAGCATACGGTTCTTCTCCTTTCTGCTGATGGCACATGGTACTTCTCCATTCTGAAGAAGGCACACTTTTTGTCAGATGTGTCTAGGCATTGCTCTTCTTTATCAGAAATGCATCTCCTTGTGTACGGAGAAACGGTGTTGGTCTCTTTGAATGTGTGAGATTGTCTCAAGATCTATTATGTTTTTTGTTGTATCTTCTAAAAGAAAACGTTATGTGAAAATACACTTTGTTTCATTGGATGGCAAGTTGACTGATAGGCTAGTTGTATTAAGGAAAGGTCAAGTACATGTGATTAGGAATCAGAAAATGATTAGAATTAACAGATTTTCATATTCACTGCAAATTAACAGTTTTATTCCATCTATACAATCGTGAGTTTACTTTGCGTATTGCAATTGGTTTACCGATTTTTGTTTACTTACTGTGCTTTTAAAAGCCCTGAAGCGAACCCTTTACTGTCTGCCTGTAATAATGTGCATTTATTTATGGCAATGATTGAAAAGGATAAACCTCCATACATATTTATTTGATCTTTAGTCTTTATGCACTGAGCACATttttatatagatttttttttaacttactatttttttttttttttacagtggtcTGCAGTTTGGAAATATACTCAAGGAATAGTTTTATCTTGTGAAATGTAAATGACGAAAAGACTTAGggtctattttaacaaacctaacgcaaTGGGGCGGTAGCACTATAGGTCcaggggtgtgtcagaaatattttaGCTATTTTCACAGTGGGAATTATGGGTACAGTAGCTGGCGGTGGTGCGAAaaggctgggttttgatgaataaataaGTTCTAGATGTGTTGAGGTGCTCCCtggctaaatatgtggttgcttcaagttgtgtatttcctttattttgttaTCCAATCCAATTGGACATGCCAGATGTTGTCAAAAAGCAACATTCAATTTACTATTGATAAGACCCCCAAAAAAACAGTGAATAATTCTCGTCAAATTCGAATAAAAACAAAACTTGTTTGTAATAGGCTACATCTAAATCCAGTTACAGGCACCAATTACTCCCCGTGGGCATATAATATTCAGACAATGTAgacaatggagggttttacacaCACTTTTCACAGGAGCTGGAAAAAATTTGAATAGATATTTATTTGTCTGAAATAGACCCCTTAGTCTATGACATGTTTAATCTATCATTGAATTAGATTGTCTTACTTTTTGACGGTTTTATGAATGTATGTGCTTTTGCACATAGCCTACCTTTTTTTTGTTAAGGAAAAAAGTATGGAATATTAATTAATCAAAGCAATTGCATACAATCAATAGCTAATCTTATCCTGAATTACTTATTTGTTGTTTGGTAATATTTAAGAACTTGTGTTGTACAGAAAGGAATAATTATATGTAAAATATAAGAAATGGTGAGGTTTGTCTGTTGCATTCCTCTTTTAAAAAGGCAAAaacaatatgtatgtatgtatgcaacTGTCTGGGAGAATCACAGTGGAACATGAATGTAACCTGCATTGATTAAAACTTATCTTTTCATTTAATCCTTTTGATCCCCAACCTTTGTTTACATGGTGTCTGAGGAATAAAGTTGAATCACACTTTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919585 lncRNA upstream 7637 44905105 ~ 44905329 (+) True G808199
TU919574 lncRNA upstream 34584 44878183 ~ 44878382 (+) True G808188
TU919570 lncRNA upstream 39336 44873392 ~ 44873630 (+) True G808184
TU919529 lncRNA upstream 130545 44781494 ~ 44782421 (+) True G808145
TU919408 lncRNA upstream 405489 44507248 ~ 44507477 (+) True G808032
TU919655 lncRNA downstream 34693 44993815 ~ 44995385 (+) True G808244
TU919673 lncRNA downstream 114951 45074073 ~ 45074321 (+) True G808262
TU920147 lncRNA downstream 189358 45148480 ~ 45148705 (+) True G808702
TU920148 lncRNA downstream 189662 45148784 ~ 45148984 (+) True G808703
TU920157 lncRNA downstream 194449 45153571 ~ 45153891 (+) True G808712
XM_021615849.2 mRNA upstream 55052 44800010 ~ 44857914 (+) False LOC110532179
XM_021615850.2 mRNA upstream 55052 44800012 ~ 44857914 (+) False LOC110532179
XM_021615851.2 mRNA upstream 55052 44803486 ~ 44857914 (+) True LOC110532179
XM_036988112.1 mRNA upstream 122123 44634555 ~ 44790843 (+) False agrn
XM_036988120.1 mRNA downstream 454 44959576 ~ 45073059 (+) False prex1
XM_036988121.1 mRNA downstream 28347 44987469 ~ 45073059 (+) True prex1
XM_021615867.2 mRNA downstream 117442 45076564 ~ 45100447 (+) False LOC110532183
XM_036988124.1 mRNA downstream 117442 45076564 ~ 45103548 (+) False LOC110532183
XM_036988123.1 mRNA downstream 117442 45076564 ~ 45112990 (+) False LOC110532183
TU919191 other upstream 459889 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 716925 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2564180 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2580528 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 2888563 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 1175609 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 3022879 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3586332 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 4000627 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 4044197 49003319 ~ 49006710 (+) True G813074

Expression Profile