RNA id: XM_036988120.1


Basic Information

Item Value
RNA id XM_036988120.1
length 7483
RNA type mRNA
GC content 0.51
exon number 40
gene id prex1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 44959576 ~ 45073059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTTGCATTGCTCTCATTCCCCACAGAAGCCAAGAGGACAACAAGCGCTTTTCAGACTGCCTTCTGAGAGTCTGTGAAATTACTGCTGCCTGCATCATGTGCTGTCGTCTCCTCAAAACTTATGTTGACACACAACTAACCATCTCGAGAACATGTGATTTAGCAATCCTCAGCCTTTAATGTGAGCTGTACATTCTCAGCTGAAGTTATTTTCTTGTCGCAGAATCGGATCTCGCAAATCGATCAGCAGTCATTCGTCGTTTATTGCAGTGTCTCTGTCTTTTCTAGAGAGAAAAAAATCAGAATAAAGACGCATGTTTTTGTTACTTTTGTTGAAGTTTATACGCATTGCGCATCATTGCATTGGGGTTTGAAGATACGGTGTTGAAAATGGACTTAAACTGCAACTAACTCGGAATACTTTTGCAGTGAACCAAGTATAAATAATAATTGAACGTGTTATTTTCCTACTCTTTGGATAAATATAAATTATGGAAGAAGACGGGCAACATGATAACGGCGGTGTTCACGGCACCAAAGATTCGGACCGCCAGCAACGCTTGAGGCTCTGTGTTTTAAATGAAATTTTGAACACCGAGAGGGATTACGTTCGGGTATTGCTTTTCCTTCAATCGGCCTTTTTGCACAGAATCCGACAAACTGCCGAAGAGCAACAGTGTCTGTCGCCTGAGCATGTCAAGaTCCTGTTCTCCAACATTGAGTCAATCCTGGACGTTCACAGAGAGGTGCTGTCTGCAGTGGAGGCCAGCCTGCACCCGGAGCCACAGCCAGGGCATTCCCTCGGACAAGTCTTCCTCCAGTTTAAGGGGCGGTTCTCGGTGTATGGGGAGTACTGCAGTAACCACGAGAAAGCCCTGCGGCTGCTGATGGAGCTCAACAAGATCCCCGAAATCAGGACCTTCCTCCTGCACTGTATGCTGCTGGGAGGGAAGAAGAGCACAGACATTCCCCTGGAGGGGTACCTGCTATCGCCCATTCAGAGGATCTGCAAGTACCCCCTCCTACTGAAGGAGCTGCTGAAGCGGACGCCCAAGAAGCACGCGGACTACCCTGCGGTGGAGGAGGCCCtgcaggccatgaaggcagtGTGCTCCAACATCAACGAGACCAAGAGGCAGATGGAGAAACTGGAGGCCCTGGAGCAGCTGCAGTCGCACATCGAGGGCTGGGAGGGCACCAATCTGACAGACATCTGCACCGAGCTGCTGCTCCACGGTAACCTGCTCAAGATCTCAGCCGGCAACATCCAGGAGAGAGTCTTCTTCCTGTTCGACAACCTCTTGGTCTACTGCAAGAGGAAGTCCAGGGTTTCTGGGAAGAAGTCCACCAAAAGGACCAAGTCCATCAACGGTCCCCTGTACCTGTTCCGAGGAAGAATCAACACCGAGGTGATGGAGGTGGAAAACGTCGAGGACGGAACAGCCGACTACCACAGCAACAACTACACGGTGACCAACGGCTGGAAGATCCACAACACGGCCAAGAACAAGTGGTTTGTCTGCATGGCCAAGAACTCGGAGGACAAGCAGAAGTGGCTCGACGCCATCTTGAGGGaacgagagcagagagagaGTCTGAAGCTGGGGATGGAGCGGGATGCCTATGTGATGATCGCCGAGAAGGGCGAGAAACTCTACCACATGATGATGACCAAGAGCCGCCACCTGATCAAGGACCGGCGTCGGAAGCTGAGCATCGTTCCCAAGTGCTTCATGGGAAATGAGTTTGTGTCATGGCTGATAGATAGTGGAGAGATCAGCAAGCCAGATGAGGGGGTCAACCTGGGTCAAGCTTTGCTGGAGAATGGCATCATCCACCACGTGTCCGACAAGCACCAGTTCAAGAATGAGCAGGTGTTGTACCGTTTCCGCTACGACGACGGCACCTATAAGGCCAGGAGCGAGATGGAGGACATTATGTCAAAGGGTGTGAGGCTCTACTGTCGCCtgcacagcctgttcacccctgTTGTCAAGGACAGAGACTACCATTTAAAAACCTTCAAGTCTGTGGTGCCTGCCAGCAAACTGGTTGACTGGCTTCTGTCACAGGGTGACTGTTCCACACGTGAGGATGCGGTGACGTTGGGGGTTGGACTGTGCAACAATGGCTTCATGCACCACGTCCTGGAGAAGAGCGAGTTCAAAGACGAATCGCAGTTCTTCCGTTTCTATGCCGACGAGGAGATGGAGGGCACGAGTTCCAAGAGCAAGCAGCTGCAACGCAATGACTTCAAGCTCATTGAGAACATCCTGGCCAAGTCCCTGGTGATCCACCCTGAGGAGGAGGACTACGGCTTTGAAATTGAGGAGAAGAACAAGGCCATCGTGGTGAAGTCTGTCACCAGGGGCTCTCACGCCGAGATGGCGGGGCTGCAGGCGGGCAGGAAGATCTTCACCATCAACGAGGACCTGGTGTTCCTCAGGCCCTTCCAGGAGGTGGAGACCATGATCAACCAGGCCTTCTGCATCCGCCGCTCCTTACGCCTGCTGGTTAACACTAAGGCCAAGGAGATCGTGAAGGTTCCAGACACTCCAGATCCCCTGTCCTTCAAACTCTGTGGCTCCGCCCCACCTCATGTACACGCAGTAAGGAAAGGGTCGGAGGCGGCGGCAGCGGGCCTCCAGCCAGGTCAGTGTATCCTGAAGGTGAACGGCAACAGCATGAACCTCAGTGACTACCAGGAGGTCCTGGAGCACTTCACCTCCTCCCAGCAGGAACACCCCGACATGTATCAGTGGGTGTATCGGGCATTTGAGGATGTTGAGGAGGACAGGGGGTCGTTCAGGGCCTGCCCAGCAGAGAATGGCtctgagacagaggaggagaatgCCAGGAATGGAACAGACTATAGCCTGAGCAGGCTGTCCATGTCTGATGACTCTGTGCCTCTGGTGAGCATGATGGTTGACAACGTGCACCTGGAGCATGGCGTGGTGTACGAGTACGTCAGCACGGCCGGCATCAAGAGCCACGTCCTGGAGAAGATGGTGGAGCCCAAGGGCTGCTTCAGCCTCACCGCCAAAATCCTGGAGGCCTTTGCCGGTGACGACAGTCATTTTGTGCGCAACTGCAGCCAGCTGATCTCACAGAGCGACCGCGTGGTGTCGATGCCTCAGTTTGAGTTCAGGAACATCTGTGACACCAAGCTGGAGAGCATCCGCCGACGAATCAGCAGCTACCAGCAGTTTGCCCAGGAGTTGAGGAACAAGGCGTGTCCCACGTTCAAGCAGGCGGGTGTGCGGCCTCACCCACTGGGCTGCATGGACTTTGTGCCCACCAACTGCCACGTCAACCTGATGCAGGTATCTTACCCCAAGACCACCACGGCCACTGGCAGGGCCTTCAGCATCCGCTTTGGACGCAAGAACTCCTTCTTCGGCCTGGACCCCGACCAAGCTAACCTGAACCCAATGTCCCACACCCAGCACTGTGTGACAAGCATGGGTGCCCCGTCCTACAGCTGCAGcggtctgggagaggagggggagtgggaCATCGAGGGCTCTGTAGAGGGCACTCCAGACAGGAGGCAGCAGGCCCACCGGGGGAAAGGCCTCAGCTTCCTGCTCAAACAGGAGGACATGGAGATCCAGGACGCATACATCCGCCTCTACAGCCGCCTTGACATCGCTGTCCGAGAAATGAGGCAGTACGTCACCCAGATAGATGTCCTGCTGTCGTCCATCACGGAGCCCACCCAGCCGCAGGGCAGCGAGCCCCCAGCCTACGAGGCCAGCCAGCCCCCCTCTGTGGCCCCTGAGGAGGGGGACCAGGAAAAAGCAGAGCACGGGGGCATCAAGAGGGTCTGCTTCAAGGTGACTGAGGAGGACCAGGAGGACTCGGGCCACGACACCATGAGCTACAGGGACTCGTACAGtgaaTGTAACAGTAACAGGGATTCTGTCCTGTCATACACAAGTGTGCGTAGCAACAGCTCTTACCTGGGGAGTGACGAGATGGGTTCAGgTGACGAGCTGCCCTGTGACATGAGGATTTCCTCAGACAAGCAGGACAAGCTGCATGGCTGTCTGGAGCACCTTTTCAACCAGGTGGATTCCATCAATAGCCTGCTCAAAGGGCCCGTCATGACCAAGGCCTGCGAGGAAACCAAGCACTTTCACCCCGACCACACTCAGCCAGAGTTCCGTCACACTGAGGACTGGACGGTACGCTGTCGCTACATCATCCACAAAAACATCCAGGAGGACCCTTGGAACCTGCCCAGCTCCATCAAGACACTGGTGGAGAGCCTACAGAGATTTGTGGATGATGGGAAGAACCAGCTGCTTCTGGCCCTGCTCAAATGTACAGACACGGCTCTGCAGCTGCGGCGGGACGTGATTTTCTGCCAGAGTGCGGCGGGTGCCGTGTGCACTCTGGCCGAGCAGCTCCTGGCGGCACTGCGTGCCCGCTTCAACAACGCCGGCGAGTACGAGGAGGACAGCAAGGAGACGAGCCGCAAGTGGCTGGAACAGGCGGCCGCCATTGGCGTGCTGCTCAACTTCCAGGCCTCACTGGCGCCACACGTGaaggaggagaggacgaTGCTGGAGGATACCAAGGCGGCCCTGTTGGACCTGGACAAAGTCACTGTGTTCTTCCGCCAGCTGGAGGATGAATGCCTGGTCGCAAACACGCCGGTGTGTTACCACGTGGAGGGCAGCCGGCAGGCCCTAAAGGTCACCCTGTATCTGGACAGCTGCCACTTCAGTGAGCTCCCCACTCGCTTGCAGAACGGGGGCAGCCTCAAACTGCACACCGTGCTCTTCACCAGGGCCCTGGAGAGGCCAGAGGGAGTGTCCCAACAGGACTGCGTGTCCATGGAGGAGTTCCAGCAGCGTACCAACGCCGTCTCACTCGAGAAGGTTAAAGCCTACTACCGAAAACTCAGGGCTTTTTACCTGGAGAAGTCAAATCTACCCACTGACTCTAACACCACGGCTATGAAGATAGACCAGCTCCTACGACCCCTTAACACCCTGGACGACCTATGTCGCCTGATGCACTCGTACCTGAATGTGCGTCCCAACGCAGCGGGCCACCTGTCGGGCGTCAGCGTGCTGTGTGTGTCCTCGGAGCTGTGCAACCGCCTGGGCGCCTGCCACATCACCATGTGTGCCACCGGCATGCAAAGGTGCACCCTGAGCGTGACCCTGGAGCAGGCCATGATCCTGGCGCGGAACCACAGCCTCATGCCCCGCTGCATCATGCAGACCATGGACATCATGCGGAAACAGGGCACCAGGGTAGAGATCTCGGCTAAAAACCTCAAAGTGATGGATCAGATGCCACCCGCAGCCCCAAGGCTCTTCAAGTTGTGTCTACCACCCCAAGACGGAGATCTATAAAAGAAAGGGGTGCTGTGTTTTTATTCCTAGTAGAGCAATTTATTTTGTATTAGCGATATACTGAAGCCTCGGTGACTAGAGATCATGGATGAATGGGTAAGGTAgaatgggggaggagggagaacagggagctctctgctctcctctcccatccaggAGTCATAGACACAAGTGTGGTACCCCCCCCAACCATGTCCCCGAATGGAACATTCCAGCACAGGAACATCAAGTGTCTGGATCCCACAGGGTCCGTGGTGTCCtgtatagcccccccccccccccccccccccccccctctctgtgacATGAGACTGCTGTCACTGACCTGGCAACCCGTCACTAACCTGGTAATTCATTGCTGGGAATCTAGAGAGGAGTGTGGGAATGGTGACATCAGACAAGACATGACCTAACAAAAATATGTCCGCCACCACGACAATGCTCACACCGGGCTATTATCAACTGGATTAACGCAAAAACCGCTTGTAGCAGACATTCTTCTTTATCCACTTTGCCTTGGACTGCAACGCCAGTGTGTGGTATCTTCGTCAGACAGCATGTCTGGTATTGCAGCTAGGAACAGAAGGCACTGCATcaaggaggagagaagggtgaaATGATAGGGAtggatggaaagatggatggtaATGGGCTGCCCTTTGCCTTAGCCCCCCTTGCATGCGGCGAATGTGCAATTACTGTAGGCTAGTGTGAGTACTGTATTACTGCACTATGACGCATAGTGATTTATTGTATTACTCAATAATATCAGGTATTCAAGAATTGAAAGCATTCCAGCCTACGCATCATGCAGTATTTAATGGAGCAATGGCATGCcatgttttgatttttttttaaactccttatctatttttttatgttttgatTTTGTCTTTGTTATTTCCTCGGGAGTTTGATGTGTTGACAAGTGTTAAAATGCAGGGAGTTTTGTTAAAAATGAATAGGAAGGGGAGTTTTAATCTGAGTCGGGGAAACAAGCTAACTTTATCTAATCTCAAGAGTTTTTTTGTGTTTTCCAATCTGCATCCCGAGTCAACAGGTTGGCATTTTTTAAGCCTTTTAAAGTATTAATATATATTCAGTAATATTAATAGTGGGAGATTGCCTCCTGTTGACCCAGCCAACTCACAAGACCTCTTTGCGATTTGATTTTAATGTTTCGATATTTAAATGAGCACACGGATTCATCTAATTACTCTGAAGTGTTAGCACAAAGTACTGTAAACTGTCCCGAGGATGATGACAACAAAGGGATCAGTGAAGTTAACTCTTGATAAACAGTAGCATTATTTTATTGAAGATGTTATATTTCTTGTATATACTTACTGTAACCAATGTCTCTGTCAGAGAAAATAGAATATGGTCTATATCTATGCCATTGGCAGCAGAGTTAATGCTATAATTTAAATGTGATTATTTTTATGGACATAATATAGTATGTAAAATGTTTGAACTTTTGGGGGTATTCATATTGTACATTTGGACAGGGACGGATTTTGGTGTCGAGGTATATATCCACACTGACGACGTTGTTGACCGTTAAAATGGCTCCACTTTCGTTTTTAGCTTGGTTTGTATCTGTGTCTAGATGCTGCACTCTGACTAGTTGCTCAGTCCTTGTTATTTATTTAGAAGCTCTTGTCAGGTCCCAGTtgagggtcatgttcattaggcaccaaatgtgTAAAAAATGTGGCACCCAatgttgaagaaaaaaaaaaaagtaaaacaggaagggactacctggacttgtccaattcGAAATGCTTacttttgttttctgttgcaaaacatttatttttgtatgTTTTCCGAACACACCCAGGTTTAAATTCTCTTTGCAGCCTCTGGTGTTGGCATAGCTGTCATTAAGTGATCAATTGATAAATTGTTCCACTCTTACCAGGTCACCTATTGATAGAAATGTAACATTTACTTGTTTTAATTTCTCATCGCTGTACATACTTTATTTGCAATTTTATGTTGCCTGAAAATAATTGTACAAATACGTTTTTGAATATTTCTTTCTAAAAATACCATTTGTAAATTGAACTTTAACAAGCTAGTAAAATAAAATGCTATTCACAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919622 lncRNA upstream 10154 44948837 ~ 44949422 (+) True G808212
TU919585 lncRNA upstream 54247 44905105 ~ 44905329 (+) True G808199
TU919574 lncRNA upstream 81194 44878183 ~ 44878382 (+) True G808188
TU919570 lncRNA upstream 85946 44873392 ~ 44873630 (+) True G808184
TU919529 lncRNA upstream 177155 44781494 ~ 44782421 (+) True G808145
TU919673 lncRNA downstream 1014 45074073 ~ 45074321 (+) True G808262
TU920147 lncRNA downstream 75421 45148480 ~ 45148705 (+) True G808702
TU920148 lncRNA downstream 75725 45148784 ~ 45148984 (+) True G808703
TU920157 lncRNA downstream 80512 45153571 ~ 45153891 (+) True G808712
TU920167 lncRNA downstream 87216 45160275 ~ 45160483 (+) True G808722
XM_036988117.1 mRNA upstream 454 44912964 ~ 44959122 (+) False LOC110532181
XM_021615853.2 mRNA upstream 454 44912966 ~ 44959122 (+) False LOC110532181
XM_021615854.2 mRNA upstream 454 44912966 ~ 44959122 (+) False LOC110532181
XM_036988118.1 mRNA upstream 454 44912966 ~ 44959122 (+) False LOC110532181
XM_021615859.2 mRNA upstream 454 44912967 ~ 44959122 (+) True LOC110532181
XM_021615867.2 mRNA downstream 3505 45076564 ~ 45100447 (+) False LOC110532183
XM_036988124.1 mRNA downstream 3505 45076564 ~ 45103548 (+) False LOC110532183
XM_036988123.1 mRNA downstream 3505 45076564 ~ 45112990 (+) False LOC110532183
XM_021615863.2 mRNA downstream 3505 45076564 ~ 45119186 (+) False LOC110532183
XM_021615865.2 mRNA downstream 3505 45076564 ~ 45119186 (+) False LOC110532183
TU919191 other upstream 506499 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 763535 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2610790 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2627138 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 2935173 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 1061672 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 2908942 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3472395 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 3886690 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 3930260 49003319 ~ 49006710 (+) True G813074

Expression Profile