RNA id: XM_021615867.2


Basic Information

Item Value
RNA id XM_021615867.2
length 2477
RNA type mRNA
GC content 0.47
exon number 10
gene id LOC110532183
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45076564 ~ 45119186 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGCCGGAAGGAGCTGAGAGAGAAGCCTATACAGTATAGGCTACACATTGCAGATTCGCAATCGCATGGACATTGCAATTGCTATTCCAGAGGGACACCGACTGCATTTACGAGCACACACAACACTCACCAGTGATGCCAACCCGCAACGAGATTGAAAACTCCCGGTTTGAGTCACCTCGACTGTAGAATGGTGCAGAAAAATGTTAACGGTGGGGTTTACCCAACTCAAGCCGGAGAGAAGAAGCACAAAGTCGGCTTTGTCGGATTGGACCCCGGGGCTCCAGAATCTAGCAGGGACGGGGCGCAGCTGATTGCGGGCTCGGAAAGCACAAAGCGGACCAGTATCCTATGCAGACGGAGGTCCAGTGCCATAAGAGGTGGGAGAACGCCGAAGAAAAACCCCAGCTATAGGAAACTACAGAATTTTCTATATAATGCACTTGAAAGACCGCGGGGATGGGCGTTTATTTACCACGCTTATGTCTTCCTGTTGGTGTTTTCCTGtctcatcctctctgttttcGCTACCATCAACGAGTTCAAGAACAGTTCTGAGACTGCCTTGTACATTCTGGAAATAGTGACCATCGTGGTGTTTGGAGTTGAGTACATTGTGAGGATATGGGCGGCGGGCTGCTGCTGTCGCTACAGAGGATGGAGGGGAAGGCTGAAATTCGCCCGCAAGCCTTTCTGTGTTATCGACATCATGGTCTTGATAGCATCTGTGTCGGTGCTGGCTGCTGGCTCCCAGGGAAATGTCTTCGCCACCTCTGCCATCCGCAGTCTCCGCTTCTTGCAGATCCTCCGCATGCTGCGGATGGACCGGCGCGGGGGCACCTGGAAACTTCTAGGATCAGTGGTCTATGCCCACAGCAAGGAACTTATCACTGCTTGGTACATAGGCTTCCTCTGTCTCATCCTGGCTAGTTTCCTGGTGTACTCGGTCGAGAAAGATGACAACGACATGTTTGAGACCTATGCTGATGCCCTGTGGTGGGGGCTGATCACCCTGACCACCATAGGCTATGGGGATAAGTTCCCAAAGACCTGGAATGGACGTCTGCTGGCTGCAATGTTCAGTATGATAGGAGTGGCTTTCTTTGCGCTCCCAGCTGGTATCCTGGGGTCTGGTTTTGCTCTGAAGGTCCAGGAGCAGCACAGACAGAAGCATTTTGAGAAGCGACGCCAACCTGCTGCTGGTCTGATACAGAATGCTTGGCGATTTTATGCTACGAATCTCGCTCGGACTGATCTGCTGTCGACGTGGGATTTTTATGAGGAGAACGTTTCTCTCCCAATGTACAGACTCATACCCCCCCTCAATCAACTGGACCTCCTGAGGAATCTGAAGGCCAAATCCTTCAGCAGGTGCTTGCTTACCCAAATGCTAAGTCCTGATGATCTTAATGACAAATAGCTACTGCTGTTGACTCTTTCAGATATTCACCCTTGTCCTAACCTCTCTGACTTTAATAACCTAAATAATGCTGCCCGTTGGGATTTGTCACggaaatgcatgtgtgtgtgtctctgtgtgtgtctctgtgtgtgtctctgtgtgtgtctttttcaTTTGTCTGGAAACAAAGGAAGGACTCTCAGACAGAAGCCTCCCCCAGGTCTGTTATTCAACCAGCCTTTGTTGTTTTACCACACACTTCTTCTACCCCCTTTTGGCTTTACTTCAATTCTGCTCAAAGCTGCTGAGGCACTCTTcttgagggagtgtgtgtgtgtgtgtgtgtcccgggGCAGAAAGGACTGAGGTTTTGATGAGTCTTGTTTTTTTACAATGTGTGTCAGATATGGATGTACCTTTTTGATAAGATCCTCCTTCAAGAACAGTGACCTTACATTTACCCACAGTGCCCTAGCTCAGGGGTTCCCACACTTTTTTATTcaggccccccttccagcattgggaaACATCCATCTATTTCTATGCGCACAGGCACCGTTCGGGACACGAACTGTTCACACACCTCTATATGTGCAGGTTCAAAGCTTattttcctgtaattctacacgtTTTGCCATGGGGtgcagagaaaatgttgcagttttgaaGCTAATTTTCTTGCagtgtctaatgtgtattcatgagATATTTGAATGACTCTAACCTTACAACAACATCTATGGGCAAAAAACAAACTAGCGAAACAAGTTACCTGActtgggctagttgatctggacattccTGACAAGTTATATATACAGTCGCTTTCTAAGGTAGGCAATGGCTGACACGAGAAGAGGATAACTGATTGTGCACAACCCAATTTCGAAATTGTACCTTGttcattctactattacaaccttCAAGATTAATTTGAAAGCAGGATGAGTTCCTTAAATCAATCtaccgtaccagtcaaaagtttggacacctactcattcaatggtttttattttatttttactacaatgaaataacacccatggaatcatgtagtcaaaGGGATGACTTtttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU919673 lncRNA upstream 2243 45074073 ~ 45074321 (+) True G808262
TU919655 lncRNA upstream 81179 44993815 ~ 44995385 (+) True G808244
TU919622 lncRNA upstream 127142 44948837 ~ 44949422 (+) True G808212
TU919585 lncRNA upstream 171235 44905105 ~ 44905329 (+) True G808199
TU919574 lncRNA upstream 198182 44878183 ~ 44878382 (+) True G808188
TU920147 lncRNA downstream 48033 45148480 ~ 45148705 (+) True G808702
TU920148 lncRNA downstream 48337 45148784 ~ 45148984 (+) True G808703
TU920157 lncRNA downstream 53124 45153571 ~ 45153891 (+) True G808712
TU920167 lncRNA downstream 59828 45160275 ~ 45160483 (+) True G808722
TU920169 lncRNA downstream 61047 45161494 ~ 45161862 (+) True G808724
XM_036988120.1 mRNA upstream 3505 44959576 ~ 45073059 (+) False prex1
XM_036988121.1 mRNA upstream 3505 44987469 ~ 45073059 (+) True prex1
XM_036988117.1 mRNA upstream 117442 44912964 ~ 44959122 (+) False LOC110532181
XM_021615870.2 mRNA downstream 79958 45180405 ~ 45191840 (+) False chrna4b
XM_021615872.2 mRNA downstream 185533 45285980 ~ 45298752 (+) True LOC110532188
XM_021615875.2 mRNA downstream 202919 45303366 ~ 45311274 (+) False LOC110532189
XM_036988126.1 mRNA downstream 203083 45303530 ~ 45311274 (+) False LOC110532189
XM_021615873.2 mRNA downstream 203272 45303719 ~ 45311274 (+) True LOC110532189
TU919191 other upstream 623487 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 880523 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2727778 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2744126 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 3052161 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 1034284 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 2881554 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3445007 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 3859302 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 3902872 49003319 ~ 49006710 (+) True G813074

Expression Profile