RNA id: TU920196


Basic Information

Item Value
RNA id TU920196
length 408
lncRNA type sense_over
GC content 0.49
exon number 2
gene id chrna4b
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45176863 ~ 45191840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGTATGTCCTTCACGAAGACTCCAAGACTGATTTGAGCTCTACTTTGTCTCCAACCAAAGACTGTAGGAGATCTTAACCATCTATCTACAACCTTTCTGTTTTGTTGGCGACTTGACGGGTTGGACAAGCCATCCCACATCCAGCTGGTAGAACATTTATGCAAGTTGATTAAAGGGGATTTGACACCCTTTAAAAGACCGAAGCGCACCGAATATAGGAGAGAGTTGACTACTGGAAACTGCCCATTGGCGTATGCACTATGAATCTTTCCAGGTGCTTACGCGTGTTGAGCGCACTTTTCTTCGTGCATCCTTCTCAAGTTTGTCCTCTTGGTGGACCCCGGGTCCATGCTTTCCGTGCTGCCCATGCCGCTGAGGAGAGGCTTCTCAAGAACCTGTTTGCCCG

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU920169 lncRNA upstream 15001 45161494 ~ 45161862 (+) True G808724
TU920167 lncRNA upstream 16380 45160275 ~ 45160483 (+) True G808722
TU920157 lncRNA upstream 22972 45153571 ~ 45153891 (+) True G808712
TU920148 lncRNA upstream 27879 45148784 ~ 45148984 (+) True G808703
TU920147 lncRNA upstream 28158 45148480 ~ 45148705 (+) True G808702
TU920238 lncRNA downstream 40630 45221092 ~ 45221372 (+) True G808777
TU920247 lncRNA downstream 46979 45227441 ~ 45234586 (+) False G808783
TU920249 lncRNA downstream 48996 45229458 ~ 45237572 (+) True G808783
TU920259 lncRNA downstream 60851 45241313 ~ 45253003 (+) True G808793
TU920299 lncRNA downstream 103524 45283986 ~ 45327942 (+) True G808823
XM_021615863.2 mRNA upstream 57677 45076564 ~ 45119186 (+) False LOC110532183
XM_021615865.2 mRNA upstream 57677 45076564 ~ 45119186 (+) False LOC110532183
XM_036988122.1 mRNA upstream 57677 45076564 ~ 45119186 (+) True LOC110532183
XM_036988123.1 mRNA upstream 63873 45076564 ~ 45112990 (+) False LOC110532183
XM_036988124.1 mRNA upstream 73315 45076564 ~ 45103548 (+) False LOC110532183
XM_021615872.2 mRNA downstream 105518 45285980 ~ 45298752 (+) True LOC110532188
XM_021615875.2 mRNA downstream 122904 45303366 ~ 45311274 (+) False LOC110532189
XM_036988126.1 mRNA downstream 123068 45303530 ~ 45311274 (+) False LOC110532189
XM_021615873.2 mRNA downstream 123257 45303719 ~ 45311274 (+) True LOC110532189
XR_005053260.1 mRNA downstream 135312 45315774 ~ 45317798 (+) False LOC118966054
TU919191 other upstream 723786 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 980822 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2828077 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2844425 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 3152460 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 954269 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 2801539 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3364992 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 3779287 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 3822857 49003319 ~ 49006710 (+) True G813074

Expression Profile