RNA id: XM_021615873.2


Basic Information

Item Value
RNA id XM_021615873.2
length 2922
RNA type mRNA
GC content 0.49
exon number 9
gene id LOC110532189
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 45303366 ~ 45311274 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTATCACCACGACGTAGCGTTCGCTGTCTGTACGTGAACTGCCAAGCTAAAACGTAGCTACAGCCTGTGAAATTGAATTTCTAATGTATGGTTTATCTAACGTTGTAAAATATCCAGCTGAATACGTCTCCCTATCTGTATCGGCATGCCCTGTTTGGGCCTAGTTTGCTTGCTAaacacttagctagctaactcgCTAGCTACTTAGCAAACTTCTTACGCCATAAATATTGCTATTGCTAGCTACAGCACAGAACAAGCTGCAATGAGAACTGTGTAGGTAACAACTAACTCGCTCAATAATAGCATTGATGTGATATTGATTAGTTAGCCAGGCCCTCTCCACAACATTTATCACTAACAGCGCTAGTTTAGCTACGTAGCCAATTGAAACGGGCCTATTAAAGCCAAGCTTATGATCCCTACCGCCATAATCACCCCTGTAAGGCCAGTTGGTGGTAGCCACAATGAAGTGCCCAATAGCTTCTGTTAATTGCCAATAGTCCACCTCATCTCATGCAAGCTAAACCAGCCTTGAAGACATTGAAGGGAGATGTGCTCTTGAATTACAAATGTTATCATTAGCACACAACTGTGTCTTCGTATCACTTAGTGAGACCTCAACCTCCCTCATGGCATCATCTGAGGTCAATGTTCATGTGGAGGAGGTGGTAGTCGTGACAACGCCGGATGGAGCAGGGGAGGGCTCAGCTGCCGAAGTGAAGACTGTGCTGGTGGCTACAGAGCTGACCCAACCGGGGGAGGAACTTGCAGATGGAAGCATTGAGTCTGAAACCGATGCCACCACCACTTTGACAAAGGAGGCAGTCttagTGAAGCTGTCAGGTGAGATGGATGTGGAGGCTGACGTGGTCTACCCGGTCACCTGTGGGGACGTGAAGGCCACTCTGGTCTGGAAGAAGTTTGTTTGTCCAGGCATCAACATCAAATGTGTCCAATTCAATGAGCATCTCATCAGTCCCAAGGAGTTTGTCTATATGGCTGGGAAATCTACACTGAAAGACTGGAAGAGAGCCATCCGAGTGAACGGCACAATGATCAGGAAAATCATGGACTCTGGCGAGCTGGATTTCTACCAGCACTCCAAAGTGTGCTCCAACACATGCCGCAGTACCAAGATTGACCTAGTGGGGACCAGAGTGTCACTCAGAAGCCAGCAGTCCACCGACTACGTCCCTGTCACCCCCTCCTCAGCCGACATGAATGGATCACAGGCCACGTTTCCAACAGAAGTATCATCAGACGAGACCACAGAATGGGTCACGGCCATAGGAGAGGACTCTGTGACGTTCTGGAGGGGTCTGAAGGAGGCAGGGCTgctggaggaggtggtggaggactTCCAGAAGGAGATCCAGGAGGTGCTAAAGGGCATGCAGGAGCGCATCACCGAGCCTCCCCTGCAAGTTAATGACGCTGTGCTGCTGAACAACATAGTGCAGAACTTTGGCATGCTCGACCTGGTTAAGAAAGTGCTGGCCAGTCACAAGAGCCAGATGGACCGATATAGGGAGCAGTATTCACGCAGTCTTGTCGCTCTGGAGCAGCAGTGTGACGAGCACAGGAAACGTGCCAAAGAGCTGAAAAGCAAATCCCAACACCTCAACAATGTCCTCATGACCCTGACCCCCGTGGCCACGCCACCCACGCCGAAACGCCCCCGCCTCACCCGCGCCGTCTCAGGCCCCGCCGTTATGTCCAGTGCCCCCACCCAGATCACCCTGCCCCTCACCCAGCTCACGGGCCTGCCTGCTGGGTGCAAAGTTCTCTCAATGGGTGGCGCGGTTGGTGCCGGCCAGCAGACCTACACGGTGCTGACATCCCCCGTGGGCGAGTTGGGCCCAGATGCCTCCAATCTGACGGTACTCTCTTCAGCCGCCGCCGTTCAGGAGGGCGCCGCCGCCACCACGGCCTTCATCAAGATGGTCAGCCCGGGCTACCAGCTAATCACGCTGCCTGCCGCGCTGGGAACCCAGCTGCAGGGCTTTGCAGGGGGCACGCTCCAGGGCACCCCCACCATGGTGGCAATGCCCATGGGTAACAACGCGCTGCAGGGTATGGCAGCAGTAACAGCATTGGATACACAGGTGGACGTTCAGGTGCAGGAAGCCAAGGAGACGGTGGAGGTGGAGAGTTAGAGAGATGTACTACTCctatattattacacacacacagcaggaacTGAGGCCCCGTTTGTCCTCACTGGTTTAAGTGCTGGAACCagtgtaggtctagtggtgttgaACTATGAAGCACCCATCTCAGTAAAACTTTAGAAAGATGACTTAAAAAATGTATAACAACGTATACATGCACTGCCCGTTTTAGTCTAAGAACCAgcacgtgtgtgtatgttttttccCAACATGCAAGTAGATGCCATCCCTGCTCAAAAGTCATGATCTTAGCTCTTCTCAGGTGTCAATTTTCACTGGGGTGTACGTGCCATGTTCACATTATTTCTTTACATTATGCTAAAAATGTAGATTCTACAAATGCTCATCTTTCAATGTCAGAATTATTTTTCATTTCAGCGATGAATTAACTGTATATATCTTTTTGTTGAATATTACAATATTAATTATGTTGGGTTCTGAAAATGAGATGCAAGACTTTTCTCACACACAGTATCAGCGCATGTGCGCGGGTTCGCCTCAGGCTGTTAGATCGTAGCAGCCAGGGAACTAAAACAGCGGAGAAGTTGAGCCTCGTGCTTCAACGCTCTTAGTGTTTGCGGAAATTGACCCACAATGCTGTTTACTTAATGCATCTatgtcatatcgctgagtctacttTTTAAAGCTTTGAACAAATTGAAAGTGAACAAACTGGTTGTTTTGTTGGACTTGTAAGAGTGTACACTTTGTAAATAAATTTGCTAAATTCTTCAATCTTTGTAA

Function

GO: NA

KEGG:

id description
K24505 GMEB; glucocorticoid modulatory element-binding protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU920259 lncRNA upstream 50716 45241313 ~ 45253003 (+) True G808793
TU920249 lncRNA upstream 66147 45229458 ~ 45237572 (+) True G808783
TU920247 lncRNA upstream 69133 45227441 ~ 45234586 (+) False G808783
TU920238 lncRNA upstream 82347 45221092 ~ 45221372 (+) True G808777
TU920196 lncRNA upstream 123257 45176863 ~ 45180462 (+) True chrna4b
TU920321 lncRNA downstream 4492 45315766 ~ 45318483 (+) True LOC118966054
TU920340 lncRNA downstream 46918 45358192 ~ 45358415 (+) True G808863
TU920346 lncRNA downstream 55245 45366519 ~ 45366894 (+) True G808869
TU920351 lncRNA downstream 62624 45373898 ~ 45374231 (+) True G808874
TU920752 lncRNA downstream 288065 45599339 ~ 45604558 (+) True G809234
XM_021615872.2 mRNA upstream 4967 45285980 ~ 45298752 (+) True LOC110532188
XM_021615870.2 mRNA upstream 111879 45180405 ~ 45191840 (+) False chrna4b
XM_021615868.2 mRNA upstream 218144 45076911 ~ 45085575 (+) False LOC110532184
XR_005053260.1 mRNA downstream 4500 45315774 ~ 45317798 (+) False LOC118966054
XM_021615877.2 mRNA downstream 94848 45406122 ~ 45424517 (+) True LOC110532191
XM_036988129.1 mRNA downstream 151354 45462628 ~ 45484801 (+) False LOC110532193
XM_036988128.1 mRNA downstream 151356 45462630 ~ 45484801 (+) False LOC110532193
XM_021615880.2 mRNA downstream 151359 45462633 ~ 45484801 (+) True LOC110532193
TU919191 other upstream 850642 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 1107678 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 2954933 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 2971281 42332093 ~ 42332438 (+) True G805451
TU916102 other upstream 3279316 42021859 ~ 42024403 (+) True LOC110532114
TU921250 other downstream 823457 46134731 ~ 46135732 (+) True G809685
TU923963 other downstream 2670727 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 3234180 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 3648475 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 3692045 49003319 ~ 49006710 (+) True G813074

Expression Profile