RNA id: XM_021615930.2


Basic Information

Item Value
RNA id XM_021615930.2
length 3241
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110532223
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46393101 ~ 46525481 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCCCCTTTTCCCGTTTATCAGCAGAGGTCGCATGGCATATGGAGAACAGTCCAACCACTTCTCTGTCCTGGAACCAATGTATGAATATGCACCTCCGTGACAAAGCCTATGGAGTATGAGAACAGCGGGGGAAAAAGAAGCAACATTATTAGAGTCTTAcgctttttaaaatatatatttttaacataaACCAAGGGGGGATATTTAATTAGTTCTGGAGTACGTAATAGTATAACCGATCTGGATATTTGCAGTTACTTTTGTTCTACGGTTGAGTGATAACTGCATTTGGCTCTCCAAAGTGGACGCATCTTGTAATCTAGCGAAAAAAGGACTGTGCATCACCGGGACGCGAGTTGGTGCAGAAGTTCGACCGCGAACGGATGTGAGGGAAGAGTGCACTGAGAACCTCAAcccccttttctttctctcctggCTAAACAATAGAGTCAAAGTCAAAGACACTGAAACTGATTTCATGCCGTCAGTCTCACAGACCCTGACATGGACGTGAGATTTTATCCTACGCACCCGTCAAGTGTGGGTTCTGATCCAAGTTGTCTAAGCTCGTTGGACTATTACCACGCGAACAAGTTTGATGGTGACAACATGTACATGAATGACAATAACCAGGAGTTTCGGTCACCAAGCCAGAACTACTCCAGTCAGGGCCGAGGAAGcaacagtggaggaggaggggatgaagACTACGAGATCCCCCCCATTACGCCCCCCAACCACGCTGATCCTTCTCTGCTGCACCTTATGGACCCCGAGTCAGGCTACACCTTTCACTCGCTGCCCCACAACGGCCTGCTCAACCCCTACTCCTACCCGGAGCTGCCCGCAGCCCTCATGATGTCCAACATGCTGAGCCAAGATAGCCATCTTCTCTCGGGGCATAACATGCACTCGATAGGGGAGAAGCGGCCCTCCTCGGAGATGACGAAGCCCAAGCCCAAAccgcagaagaagaagaagaaaaaggacCCCAACGAGCCGTCGAAGCCCGTGTCAGCCTACGCCCTCTTCTTCAGGGACACCCAGGCGGCCATCAAGGGCTCCAACCCCAACGCCACCTTCGGGGATGTGTCCAAGATCGTGGCCTCCATGTGGGACAGCCTGGGGGAGGAGCagaaacagGCGTACAAGAGGAGAACCGAGGCGGCCAAGAAAGAGTACCTGAAAGCCCTTGCCACGTACAGAGCGAGTCTGGTTTCCAAGACCTACGACGACCCCGTCGAACCAAAAAGTGCCCAAAGCAGCCAACCCTCCCACATGCTGCCCCCCAAGCAGCCCTTGTACAGCATGCCTCCGCAGCCCTCCTCCCCCTACGGTCTGGGCCCTGGCTCTTTCCCCCTGTCAGACCTGCAGAGCTTCGCCGGGCCGCCCCGCCATGCCCTGACCCGGACCCTCAGCCAATCCCAGATGCTGCCGCCCAGCATGAgtgcctctcccccctcccccttccagaTCAGCCCGCCCCTTCATCCCTCCCAGCTCGCCCTGCACCAGAGCTCTCTGCGCATGCAGCAGGTCCAGTCACACTCAATGGGGCTCCAGGGGtctctgcactcacctcctctcaGCCAACAGGGGTTCTCTCACATTCAGGACTACCAGAACAGTGTGGGTGGGTCTCAGTCTCCGGGGGCGCCCAACCCAGGGCATGGACAGAAGCCCGACTGGGATGGCGAGTACTGCAACCGGGACTGTGGGCCCAACCACTGCAGCAGTGGCATGGGAGTTCGGGACAAGCCTCTCTACCTCACTTGAAGCTGGTGGACCTCCATAAGTCAAGACTCCAGGGAGTTTTCCAACATTCATTAACAACGTCAATGTATCTTTTTCCTCCAGCTTGTTTTTTTCTGAAGGATTTTTTAAATCCCAAAGACTGCTACTACTTCACCTTTTTGCCAAGCACTTAGACTGGACAGGAGCCTTGCTTATTTTTTCCATGAATGTTCCATTTTGTGGGGGGGTTGAGCTTTAAGCTCACATCAACATACCATACacgaaccccccccccaaaaatgtctgTCTTTGTTTTGACAAAGGGGTCGTTGTTGGTCTGGAGGGGAGAAACACAAGTGTCCCATTTTTCTTTTCTCAGAGTGATTGTAAATATCTACCAAGATGGAACCTGGCCCCTTATGCCCAGATGTGTGTATCTAACCGCAATCCCCTTGCTTTTTACATTATTTTGTCTGGTTATGTGATGTTTGTGCGGGCTGGATTCAGTGAGGGAATACACACTAaatctgatcccagatctgtttgtgctgtctttgcAACTTCTATGGTGACAATGGCCATATAAAttgacaagacagcacaaatagatctgggaccaggctaactccTCTCTAATGAAGAGAGAAAAACAAAGACTGCAAATGATTCAGTTCCCCAGTTGTTATTGGGGGCTCTCTGAGAGAGAGTGTCTGCGtctgaaatggtaccctattccctatctagggcactactctagtcaaaagtagtgcactagatgaggaatagggagccattttggacACCCTCTGCACTGGCCTCAGGATGTTACTGGACTGAAGAGGTCAAAGGTGAAACCTCTCCCTTAGTTTAAACCTCTCCTGGTCCAGCGGACCATGCCCCCCCCACTCCCCAACACCACTTGCTAAATGTGAAATGTTACTAAAGATAAAAACATAACAGTGGGTTTTAAAGTTTTTGACTAGTTTCATTAGTAGGTGTTTTAGAATTGTGTTGATTTTAATCTTTATAATTTgttgtgaaataaataaataatgcatTTAATTCTTTAAACATTTTAGTTTTTCACTGTAGCACAATTTAAGTTTCTATGGTATGGTTGCCAGGTAGATATTTCATTTGCGCACAAACCTGCAAAAATGACTTATTTTATTTGTAAAGACAGCGATGAGAGAACCCATTTCCTTTAGTTGCAGAACATGTTTCACAATGTTGTAATGCTATTTAATTCGGTTGACAGATTTCTAATCTATTTATGAATGATATGAAGTAAAGTTTTGGCTTGTTTTCATCAGGGtgcattgttattattgttattattaaaatTCCATGGTAATTTGAATAATTATTATTTGTACATCACTTCTTCCTGGTGCATTGACTTTTTGTCAGCATTTGGTTCATTGTGTGTTGCAATGcttcttttgttttcttttgtgtgtaataaaaaaaattaagTGGAAAATAAACAGTTTGCCTCTGCTTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922320 lncRNA downstream 967 46389618 ~ 46392134 (-) True G810649
TU922306 lncRNA downstream 21626 46365376 ~ 46371475 (-) True G810638
TU922290 lncRNA downstream 46806 46344674 ~ 46346295 (-) True G810623
TU922259 lncRNA downstream 88688 46304137 ~ 46304413 (-) True G810596
TU922258 lncRNA downstream 90140 46302723 ~ 46302961 (-) True G810595
TU922436 lncRNA upstream 46312 46571792 ~ 46571991 (-) True G810762
TU922463 lncRNA upstream 79458 46604938 ~ 46607793 (-) True G810788
TU922465 lncRNA upstream 79652 46605132 ~ 46606666 (-) True G810789
TU922476 lncRNA upstream 95761 46621241 ~ 46630667 (-) True G810800
TU922492 lncRNA upstream 118016 46643496 ~ 46644462 (-) True G810814
XM_021615925.2 mRNA downstream 75576 46305459 ~ 46317525 (-) False alas2
XM_036988152.1 mRNA downstream 75576 46305459 ~ 46317525 (-) True alas2
XM_021615919.2 mRNA downstream 129267 46258035 ~ 46263834 (-) False LOC110532215
XM_021615916.2 mRNA downstream 129279 46258036 ~ 46263822 (-) False LOC110532215
XM_021615918.2 mRNA downstream 129279 46258037 ~ 46263822 (-) False LOC110532215
LOC110531189 mRNA upstream 119310 46644790 ~ 46656973 (-) False LOC110531189
XM_021615941.2 mRNA upstream 194082 46719562 ~ 46781807 (-) False LOC110532229
XR_002474918.2 mRNA upstream 256328 46781808 ~ 46783939 (-) True LOC110533016
XM_036988157.1 mRNA upstream 276108 46801588 ~ 46819008 (-) False prdm2a
XM_036988158.1 mRNA upstream 276108 46801588 ~ 46819008 (-) False prdm2a
TU922219 other downstream 137383 46253555 ~ 46255718 (-) False G810563
TU922220 other downstream 139106 46253514 ~ 46253995 (-) False G810563
TU922159 other downstream 202109 46187264 ~ 46190992 (-) True zmynd12
TU920588 other downstream 1074335 45316618 ~ 45318766 (-) True pdyn
TU920571 other downstream 1095251 45295856 ~ 45297850 (-) True G809071
TU923044 other upstream 653324 47178804 ~ 47181797 (-) True G811300
TU923583 other upstream 1137585 47663065 ~ 47664954 (-) False LOC110531190
TU923584 other upstream 1148910 47674390 ~ 47676649 (-) True LOC110531190
TU924356 other upstream 1752694 48278174 ~ 48286430 (-) True LOC110532252
TU924730 other upstream 1983165 48508645 ~ 48509094 (-) True G812840

Expression Profile