RNA id: XM_036988158.1


Basic Information

Item Value
RNA id XM_036988158.1
length 6789
RNA type mRNA
GC content 0.45
exon number 6
gene id prdm2a
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 46801588 ~ 46819009 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTGAAATAAAAGTTATTGTAGGGGAAGTTGAAGCAAGACAAAATATATTGTTTGGTGGACACAGTGTGGGCATTACAAATGCCAACAAGGCGTTAGTGGCAGCATGTGGCGGACGCTGTTACTGCTGCTGGCTCAGAAGGTCGGACCCTCTCAGAAAAAAAGTGGTCCGACATAAAAGCGGAGGCCATAAGGCGCATAGCCTTACACAGACAAAGTGTTTGTGCCACAGGCGGGGGACAGGGACACCGTAGCTCAACCCCCTTGATGGGCGTCTTGCCAGTATTATAGGGGAATCCCTCCTGAGTAGTGACGGAGGTGGAGGGGGAAACGGACATGCAAGACACACCGGATGATCCAGTCACTGTGTTCAgcggggtcggtggtgctgcagctgagcaggagctgagtcGCCCAGCCCCCTGTCTCCACTGCACCTCGTGCGTCACAACCCTCCAGCAGCAGTGTCCTCACAGATGCAGTCCTGCAAACGCAAAGAGACACCATCGATGCGATTAACGAGGTTGCCAAGGAGTTGAAATGGGAGTTGAAGTGCAGGTCCTTCTCTGTAAAGCTGGGCCCACTACAGCACAGATATCAAAGACAACAGCTCTTGGTAATCGGATCCGGCTCATAAGCCACTCATCATCAATGGCCAGTAAATTTTGCTGTTCTCTGAAAATTCGCACTCTGAATTCTTCCATTCGCCAAATCTTCCGAACGGTGCAAAAGCAGCCATTGTGCGTCATTTTGCATTGTAATTGCATGCCTTTTTATACCCACTCATTTGATTGTCACAGTTACCCAATTGCGTAAGAGAGTGGCATACGCCTTCTTTTGTGCCTACGCAacatttataaatgaggccccaggtgaGTGGGCTTTGATTAGTCAATGACATTACAATGACTTGATTAAAATGACCAGCATTGCTGACCTCAAAGGCACGGATTTGATTACCCCTGAAATAAGAGATTTGCCAATGAACATTTCGGAAACAATTCTGTTATGGCACCATAAGGAAGACAATAACAGATGCAAGCCTACAACTGAAGAATACCCTAAGCTTTATTCAAGATTAATCTACAGACAGAAGCCTGGTCAAAACAAGCAAAGTCAAAAATGATGCAGTGAACCGATTCTGAAGATGGTCTGAGCTGAGAGGTTCTCCCACCTGCCGATCCCTACAAAAGTTTGCTGTGTCAGAGGACTCCAAAGAGAAGAGTACGCAGCTTCCCAAGGCCATGGAAGACTCTCACACTTTATACATCTCAGAGTTGGGAGACGATGACCAtttagaggaggagatggaagatAAGGAGCTTGAGGAAACTCACTGCAGTCTTTATTTAATGTCCATGGAAACGGATGAGCTGGCAGATTCAAACACAAGTTGCCAAAAACCTGAGGCCAAAGGCTGTGGCCTGAAGCAGGATTTAGGATCGGTCTCCCATTCAGCAACCCCTGAGCTCCCAGAGGATCCTGACCATGACCCTGATGTAGAGCTCCAGGACTCATTTCCCTGCCAATTCTGTGAAAGAAATTTTACCAGCAAGCAAGGCTTAGAACGTCACATACACATCCACACCTTAGctaaccaccacacacacatatttaagtGTAAGTACTGCAGCAAGTCCTTTGGCTCAAAAATTGGCCGGCGACGGCATGAGAGGAGACATGAAAATGCAAAGGCAAGGCCTGGATCTTTAATAAAGCCTGTGGAGCCTCCAAGTTCTGCCCTACAGCGCAACGGTCCAGAATGTGTGTCTTCTCCAAGTAGCTCCAGTGCCTCTGTTTTGGCAGACAGAGAACAGGCGTCTATGTCAGATGAACATGGAGAATTACAGGGTGGTCACACTTGCAAGTATTGCAAAAAGGTTTTTAGCACGCATACAAACATGCGACGACATCAGCGCAGGATCCACGAGCGCCATCTCCGGCTCAAAGGTAAGGAACCCCCACTGTTGCAGGAAGCAAAACATCCAAAGCTACCCCCTATTAAATCTCAACAGGATACCAACAACACAAGCCCAGTAGCAGTTCTTGAGATCGAAAGTGACCAAGAGGAGCAATATATGCTGGATATCTCTGGTAACATCTCTGAGAACCTCAGCTTTTATATAGATGGGAAGATTGTATCAACAAGCACTGTCAGCGGCTGTGAGGTAGTTGAAGTGAACTCTGGATCTGCTACTTTAGTCGGACTAAATGCTGTGATTATTAATCCTGCCCAGATCAGTCAGGCTCTTAAAGTAGAGACTGCTACTCACACAGGAAAAGGGATATCTGGTCAACCCTTGACAAAAAGGAGAACTGCCACACCACCTCTTCTACCCCAAATCAAAACGGAATTAGAATCGGAAGTTTTGTCCTCTTCTTCATCAATTGTGTCATCTTTGATAGAAAGTCTCATTCCTCAGAACACAGAGTCTACTatccttcagagagagagaacagtttatcTGTCACCTAAGCTGAAACAGCTCTTACAGATGCAAGATGGCCTCAAACCCAGCTTTGCCCTGATCACAGAAGGCCAGAAGCTGTGTTCACCACTTTCCCTGACTGTCCTCCCAGCAGGATTGGGGAGGTTTAAAAGAAGGACCGGGTCTCCCCCAAACTCACCACAAAGCCCTATGTCGAATGTTGAAAGCACAACAACCGATGTGGGTGTTTCTATTGCTGTCAATGCCCCAACGTCAGAGAGCCAATGCAGTTCACCCGCATGCAGTTTATCCAGCAATGATGAGAGTGAGATCTCCAAAAGTCCACCAGTAAACGATGCAATGACAACTCGTGTCTTGCCAGAGGGATGGTCCCCAATGAGTGGGGGTTGTTCCTGCAACCAGCAACCTTTGGACCTCTCAAATGCTGTCAAGAAAAGTGAAGACGAAGCCCTGCGGGAAGCTGTGTTGGACTTGAGTGTGCACAGAAAGAGTGCAGATTCGGAAGCAAAGAGAATTTTAGTTCCACAGCCCTTAAATAAAAAGAGGAAGCCAAACACCAGCATGTTGGAGAAGGTGCTGATGAATGAGTACGCAAACCTAGAGGTTGTTGCAGAGCAAGAATTAAGTATATTAGAAAATCATGATGCACCGTTAGTTACAGACTTTGCCATAGTTACTGCTTCGGATATGTCACCTGCTACTGAAGGCGAGGTGTTCGGATTAACTTTTCCCTCTGCAGCACTTAGTCCATCCCCTTCCTCTCTAGCTTCAGTCCCCAGGCAATCAATCTCACCATGCACCATAGCACTTGCTTCCCCATCTCCACATCCAATCTTACCCACTGCTCCGTCGCTAATTACTGTTTTAGCACCACCAACATCTTCCTCTAGCAATTCCACAAATCAACCTATCCTTCAAGTATTGGCCTCTAAGATATCTCCTAATCCTTTAATAATCTGCACAGAAGATTCATTGAATTCAGCTGAGTGTGAGTGGAGAGCTGCTTTGCCAGATTGGGCTACCTCTAATTCTGCAAGCCAAATTGCCATCTCTAAACCCCTTGACCCAACTCTCAATCTACAAGGGCATGTGTTTCTCACAGATCACACTTTAAATCAAATAGCTCTGAACACTACCACAGTTGAATCCAACATTGGATTTGAAGTGCCAACATGCTCTCCAGCTTTAACTCTAAACGATTCCCTTATCAACTCCTTTGACATTACTAGTAATACTGTTTTAATTGAATGCACAGTTGCTCTTGAAACCCCAGAGAACCTTGTCCCTACCACAATTGATTTCCAAGAGAATAATTTTGAATCCACAGCACCTGCGCAAATTGTCATAAATCAGCAGCAGCCTCTGTCCTTGCCTCATGAAACCATTGACCCTACTATTTTAGTATCTTCTTTAGAGCAATCGGTTACCCTTTCAACGCTGTCTGCAGTCATATCTGAATGTCCAACTCGTCAAGAATCCATTTCCTCCCCTGTTCCTGCCATTATTAAAACGGAATCAAACCAAAAGGTAGTATCAGAGGACATATCTATCTGCCCCTCTAAAACGCCGCCACCCTCTGAGGGCACAAGTCAAGTGGAAGAATCCTCAAATGAGACCCTCTCCAAGCTACAAGACACTTTCACTAAGGAATTCATATGCAATGTATGTGATAAGCTTTTTCATTCAATGAAGGAACTGGGTCATCATGTAAGTGAGCATTCTGATGAATGGCCATACAAATGTGAGTTCTGTGTGCTACTCTTTGGAAAGCCCACGGCATTGCTTGATCACAGGTCAACCCTCCATGGCGTCGGCAAGAGCTATGTTTGCTGCGCATGTACAAAGGAATTTGCTTATCTTTGCAACCTGAAACATCATCAAAAGGAGTTGCACCCTGGCCAGGAATGCAAATACACAGAGGAAGAAAATGGCAAGCTACGACCCCAGAACTATAACAATGCAACAAAAGTTAGCACAGAGGCTTTGTCCTACTGTGCCATGGCGGAGTCCAATAAACCTGTCATAAAAGATGAGGGAGAATTAGACGACGCTACTGAGGAACTCTTTACCACAATAAAGATAATGGCTTCTGAGGGAAGCAAACCCAAAGGCCTGGATGTTTGCCTTGGCATCAACCAACACTATCCCAGTTTTAAGCCGCCTCCGTTTCCCTATCACAACCGGACACCTGTTGGCTCTGTAGCATCAGCTACCAACTTCACCACCCACAACATCCCACAAACCTTCAGCACTGCTATCCGATGCACTAAATGCGGCAAAAGCTTTGATAACATGCCAGAGCTGCACAAACACATTCTTGCCTGTGCAAATGCCAGTGACAAAAGACGCTATACACCCAATAAGAACCCCATTCCTCTTCGTCACTTTGCAAAAGCCCAAAATGGAGTACTGTCCTCTACTAATTCCACAAATGGCCAAAATGCTCTACACACGGCAAGTCAAACAAATCGTCCCAAACTCTATCAGGAGCCACCTGCCAAGTTGAAGCTTAATGCACTCAACAAAAGGAAAAAACAGCTGGTACAGAGGGCCATTTCACAGAGGAGTAAGTCTACCTCTTTGACAAAGAAAACCTCTTCTCTAGTCCATGAGGAGCAAGAGATCTATGTCTGTCCGCATTGCATTAGAGAATTCACATACCGCCGCAGCCGGACCAAGCACATGGCCGTCTGCCCCAGGAAACCTGCTGCCAAAGAGGCCAAGAAAAGAAAAGATGGCAGTATCTCTTACACTAAGGAAAATAACGGCCACCTTCGCAGAGAAGTCCATCATTTGGAAGAGAAATCTGACCATGAACAGAAAAGCAGAGCCCATAGTTCAAGTCCAACAAAGAGGACAGCCATATTACCAGCTCATAAAGTCCTGTCAAACAAAAAAAGTAAAGCCATCATTGCAATGGCAAGTGTCCAAACACCGCAGGAGGCACCCAAACTGACTGCGCTGTCTCTTGTTCGCCCTTTCAACTCCCCACAACGTCAAGGCAGTAGGATGCAGCATGGTGTGAAGGAAATTCGTTCTAACATTACAATGGTGAAATCCCACCAACAACCACCACAGGTGGATGAGCACCCCTGCAGTCAGAGTGGAAGGGTGAGGGGACCAGTGACCCGCAGTCTACAGCAGATTGTCGTCACAGATTCAGCAAAGGAAGAACAGCTGACCAGTCAGGAGCCACCAGGGGATCTGCAGGATCCTTCAATTTGAGATTCATCCAATGGACTGCTTCAGACAGTGGAAAGTTGAGGATCATGATACATTTGTGGAGGCTTAATGAAAGAAATACAAATGCAAGAAGAGCTGGCGAATGCAGCAGTGGGTAGGTGCAATCGGACAATGTATGGAGGCTTTCAGAGAACATTTTTGTTGTGCATTTCTTGTCCTTTTCACAGAATGTTTGGAAAAGACTGCTGTGCACTTTGAGAAACTTTACCTGTGATGGGCACGTGCATCACAGAACAAGTCATCTTGATGATtatctgaaaaaaataattaaaaaagcCCATCCCTATGAATAACTAGTGCGGTTTGCAAGTGGCAATCATAGGGGCATGcagttattacattttttttttcagttaGCTATATGTGTACTGTTATGTGGCCTTTTTTATTTGGAACCTAAATGCATGCTACCAGTTTATTGTAGTACTAGATTGCCCCTTTCTCACTCAGTCTGTCCAATTTCAAACCACACTTTTTAGGTTTGAATGATCATCAACAAGTGAAACTCTGGATCTCTTAAAAGGATAGTTTTCCAAATGTTTAACGTAATCGTAATAATTGTCATACCTCGAGGAGTTATGTGGCTGTCTTAGAATTTTAATACAAGCTCCAAGGAAAGCCCTGAGAGGTAAACAATGCATGGAATGTGAGTATAAAACcctagagctgggcgatatgaGATTAATTGGAATGTATGTCTAGCgcgatattccaaatgcctgtatctCATGAATCCATTTTTTGTTGTACCTTTGCATTTACACACACCAAGCCCAGCCCCCTGGCACTCACAACGACAAAGATGAGAGATCACCTCTTCTTCTCTGACAGTGGTTTCAACTCTCATTTGCATTTTAGGTTTGGTCTGACAATATGTCATATGGAAACCAAAACACATAAAAAGGTTAATCTCCTCTATTATAGTAAAGTAATGTTTCTAATGGGGACCTCCTGGAGGTTAGGGAGccccagatagcatatgaacacTCATAAATAAtggcaggaaatttgctttaacgGTTGACTTTGGGTGCGATAAACGGTCCAACTTATTGTCAAACAGAAATTGGGTGTGCCTTGGGTGGTTAATCAATGTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922525 lncRNA downstream 55 46797012 ~ 46801533 (-) True G810845
TU922558 lncRNA downstream 68589 46724532 ~ 46732999 (-) True G810870
TU922550 lncRNA downstream 74536 46721247 ~ 46727052 (-) True LOC110532229
TU922491 lncRNA downstream 153138 46644716 ~ 46648450 (-) True LOC110531189
TU922492 lncRNA downstream 157126 46643496 ~ 46644462 (-) True G810814
TU922609 lncRNA upstream 29022 46848030 ~ 46848256 (-) True G810920
TU922722 lncRNA upstream 180469 46999477 ~ 46999754 (-) True G811025
TU922918 lncRNA upstream 183087 47002095 ~ 47002359 (-) True G811197
TU922954 lncRNA upstream 241257 47060265 ~ 47061192 (-) True G811233
TU922961 lncRNA upstream 276668 47095676 ~ 47097526 (-) False G811236
XR_002474918.2 mRNA downstream 17649 46781808 ~ 46783939 (-) True LOC110533016
XM_021615941.2 mRNA downstream 19781 46719562 ~ 46781807 (-) False LOC110532229
LOC110531189 mRNA downstream 144615 46644790 ~ 46656973 (-) False LOC110531189
XM_021615929.2 mRNA downstream 276107 46393101 ~ 46525481 (-) False LOC110532223
XM_021615947.2 mRNA upstream 10676 46829684 ~ 46847696 (-) False LOC110532231
XM_021615946.2 mRNA upstream 10676 46829684 ~ 46847701 (-) False LOC110532231
XM_036988160.1 mRNA upstream 10676 46829684 ~ 46847702 (-) True LOC110532231
XM_036988161.1 mRNA upstream 37515 46856523 ~ 46909499 (-) False LOC110532232
XM_021615948.2 mRNA upstream 37515 46856523 ~ 46956480 (-) False LOC110532232
TU922219 other downstream 545870 46253555 ~ 46255718 (-) False G810563
TU922220 other downstream 547593 46253514 ~ 46253995 (-) False G810563
TU922159 other downstream 610596 46187264 ~ 46190992 (-) True zmynd12
TU920588 other downstream 1482822 45316618 ~ 45318766 (-) True pdyn
TU920571 other downstream 1503738 45295856 ~ 45297850 (-) True G809071
TU923044 other upstream 359796 47178804 ~ 47181797 (-) True G811300
TU923583 other upstream 844057 47663065 ~ 47664954 (-) False LOC110531190
TU923584 other upstream 855382 47674390 ~ 47676649 (-) True LOC110531190
TU924356 other upstream 1459166 48278174 ~ 48286430 (-) True LOC110532252
TU924730 other upstream 1689637 48508645 ~ 48509094 (-) True G812840

Expression Profile