RNA id: XM_036988165.1


Basic Information

Item Value
RNA id XM_036988165.1
length 4742
RNA type mRNA
GC content 0.54
exon number 12
gene id LOC110532233
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47002142 ~ 47095401 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGATATAGCCTACACAGGGTTAAAACACAACTATTTCAAACGTCCCGTCAGTTGAATTTGTTCCACGCAAATACTTTGAAATATCTTGAAAAATAGGGAAGTTTGCAATGCTCAGATAGCCATAGGCTCTAGGTTTATTGCATATGGAAAGTATGTAAGCAAAGGAGCCTATACCTGCATCTTTTTGTACTACTTCTAATACATCAAACAAGACGTTGTATAGCCAAGTATTGTTTATTATTCAGGTAGAGACCGTCTTGCGCAATACCAGCATATTGGAAGGCACAATGACTGTAAACCTGTTAATTGCAATAAATAAAGGCAGGTAAAATAAGAGAAACCAACATCATAACAATAGGCCTACTGTTTAGAAAATACTAAACTGAAGAGATGTGGGGAAGTGTCAATGATCATTGTGGATAACGTGATGTCCATGGCTAAGGTATGACCACTCCAACGTAGCAGGTATTAGTAGCGCAAGTCCGATTAAAAGTGGTAGGCAGGAGCGCGGGTGGTAGGCAGGAGCGCGGCGAGAACCGTCATGCGAGTGGTGAGTGGTGGAGTGTGGCGGCAGAGAGCGCGGCGACTACAGAGAGCTGGAAACTAGTGAATGGCAATCTGTCGGGGAAGTTCAACAGACCGCTGTCACAGAGCGACACCGGAGCCCTGCCTAAAACAAAGTGGCTCGTCTTCAAGTCTGGGACGACTGACCAACTCCGAAAAGAGGACACACAAGTTGGCTCGGGCTAGCTGCTAATCACTTGTTACCGGCGCTTCGCTCCCAGTAACATGCCTGCCATCAAAAAGGAGAGACTGGATGGGGACGTATTGGCATTGGCTGCCTTCAACCAGTCCGAATACCTGGCCCCTTTAAATGACACCGCTATCACTGTGGTGACCCCGCACCCACCGCAGTACGACCATATTTTCGGACATCACCGCTTGTACTTGGGGCTCCACGACTCGGCACTGCATCACCAGCACCTTCACCATCACCCGGACGACTTAATGCTGGAGAGGTTTTCCTCCATCCCCGACTTTCAGCCGTTTTTTGAGAACGGGGAACCATGCATCGAGGTGGAGTGCGGGGAGAACAAGGCTTTACTATACATTAACAAACTGTGCCAAGGTAGTAAGGGACCCTCAATCAAATACCGGGGCGAGTGGCTCACCCCGAATGAGTTCCAGTTTGTCAGTGGAAGGGAAACCGCCAAAGATTGGAAACGAAGTATACGGCACAAAGggaaaAGTTTAAAGACCCTTATGTCCAAAGGAATCTTACAGGTACATCCCCCAATCTGTGATTGCCCTGGGTGTCGAATTTCGTCTCCAGTGAACCGCGGGCGTTTGGCAGAGAAGCGCACCATCCCCCTGCCCCCCAACCGTGTGCCCAAGAGGGAGCTCTCCTCCGTCTTTAGCAGTGACGACAGCGAGGGTAGCGACCGCGCCAGCGGAGACCATGCCCACATCAAGCAGGAGGATGAGCTGCATTACAGTATCATGAGAAAGAGtcGTGACAGTGACCTCTCTACGATCATCTCCAACCTCCACCATACCAGACAGCACGGCATGCCCGAGAGCCAGCCCGCCACCGACCTCAGCACCAACACAGGACACACAGATAACCTTCTAGGCAAGAGGAGAGCCTACTCCCCCAACAGCAGCAGCAAGTGCCCCTCGGACATCAAGAAGTCGCGCAGCGTTTCCCCCAAAGAGAAATCCCACACCCCTGTGCTGGAGGGGGGCGGCCACAGTCACATGACCCCGGAGGAGCACTACAGGCGGATGATGTCAGCGCTGAGCGAGCAGGGCGAGGAGCAGCAGCAGCGCCTCTACCAGCTGGCCAACAACATGGGCCTGCCCAGCCATGaTCTGTtgcgagtgcgccaggaggcccTGGCAGCAGTGAGGAACACAGGAGGTTTGGAGGCCCATCTCCCTTCGGCAGGCAGCTCGTCCAGCCAGAGACGCAAGCAGGGCCTGCCCCAGCACAGAGACGCCCACTACACCGAGAGGGAGAtgtcccatcctcctcctctgctgTCCACCCAGAACGGCCCTCACATCACATTGGGACCCCACCTGCGGCCCCCCTTCTTGGCCATGCCCTCCTCCCTGTGCCAGTCCCCCGGCTATGGTTTCCTCCAGCCTGCCCAAGCTGAAATGTTTGCCCGGCAACAGGAAATGCTTCGGAAGCAGAACTTGGCCAGGTTGGAGATGTCAGCAGAACTGCTCAGACACAAGGAGCTGGAGAGTCtccacaggcagcagcagcagcgtgcGTTGGGGGGGTCTGACCCCATGGGCCTACCCCATGGCCTCCCTCCGGACCATCCCGCCCTGCGCAGTCTCCACCACCTGCCCGAGGGACACCCCCTCCACGAGGAGCTCAGCCGACGCCAAAACGCCATGCTGATGCTCCGACACACCAGCACCCCTTTACTCTCCCTCAACCACCAGGGGCCCTCGGGGTCCACAACGCCCAAAGATACCCAGGGACAAGGCTCCGGGGCTGGGGCCGGATTGAGTAAGGGGGGCTCACGGAAAGGCCCCCAGCAACCCAGGGGGGGAGACCACCAAGAGAGGGAGGGCCGAGGGAGGGACGGAGATGCAGATGGGCAGGATGAAGAAATGAAGGACTCGGATAGCGAGACGGAGATGGGCGAGGATAGGCATGAGGGATTGTTTGCCAAGGCAGCCGACTGGCATGGGCTTCACAgggacagggggaaagagagcggCGGGAAGGGGGGGTGTGACGGTGCCAAAGAGGCGGGCGAGGGCTCGGGTCGGCTTAGTGCCCCCTGTAGCTCGGCGGGTGCAGATTCACCACCCGGTCATCACCTCTTCACCCCGGGGCTGGGCAAGAGCGATGTCAAGTACCACTTTCCACCTGGCGCCATGCCTCCGCTGCCAGGGCTCCACGGCCAGTCGCTGCCCTTTGGATTTCCCTACACAAGCCCCTACTTCCACACTGGCGGTATGGGAGGTCTGTTAATGGACAGTGAGGACTCTGCGGCGCCCCCGGTGGAGGACATAAGCAAGtggagtgtggaggaggtgtgtggtTTTGTGGGAGGCCTGGCCGGCTGTGCGGAGTACACACAGgtGGCGCGGCGCGTTGGCAGACTCTTCTACATGACCAGCTTCCCGCTGGCACTCCCGGTGCCGCCATCTGCCCTGCGTCCCCCGGACAGGGACCCCCTTCTGTCCGACACCCTTCTGGCGGTCCCACTGCGACCCCCCTCCGTCGCCAGCAGCAGCTCCTCTCCCTACAGCGGCCCTCCGCCCCCATGTCACTCCTCCCCCAAGCAGGAGAACGGCTCCGCATCAGGGGTCTACGAGGGGGCCAAGACGCCCTCCTAGGACTCAACAGGCTGCACAGGGAGCATGaactgtagaggaggaggaggggtgtagagagggtTCAGAGAAACCCCATGTAACAGACATAGAACTGTCCCCATTTCATGTAAAATATCAAAAAACTACAACTAAAGAAAATGAACTGAACAGACTTCAACTTCAAGTTCCACTGTGGCTGTAGCCAAGCAGAATCCAAAGACGTGACCGACAGTGAGCTGGAGCGAGAGACGTCATGAagcgacagagggagagagagaaagagagaacgagaaagagagggagggagcagacaGCTGGTCTCAGTCAGATTGCCAAAAAAAAGAGCGAAGCGCCACAACTACGACATTCTtctgagtgagacagacagacgctAACGGAAACTATTCCTTCCTGGGCTGAAggaagccccccccccacccccctctcgctctctctgctccacaACACACCCGGCGGCGCCCAGCACTTAAAAGGAAGACGCctcttccctcttttctctcactCACTTTTCTCCCCACTCCCAGTCTCAGGAGCCCAAACAGCTCAGAGGAACTGAGAATTCCGGAGGCTGGAGCGAAAGGACTCAAAACCCCCCTCATTATTGCAACTATGCATTCCACAGTCCAAAACCAAAGATTACCGGATGTGTGGAATCAGGACGATATTTCATGTTTGTTTCTggtgttttattttgttttgtttttgctttgtgggAAAAAATGTGTAGTCTTAGGGAGGTGTGGTATATTAAGGAGAACAGTGGGCCAGGTACCATATAACTGTCTTTAAGAGACAAAGGGGGACTCTTTGAAAGGTGACAAAGGCACACAACACAGTGTTGTGCCCAGAAGCCAACAGTCTACGCTGAGTTGTTTCTCTGACACGCCCTGATAAAAAAGGGCCAAATGTTACTGATATGGGATGGTGACGAAACGGCTCATAGAGCTAATGTCATTGGAAAATCCTGTTAACTACTGTGGGAGATACAAACACGCTGAATTGTACAGAATGATGCTTATGATGGAAAGAAGGTTGCAGATGTGTTTCGGGGGTTCATTAAATGTAGTTGCACGAATAACGTTTTCTTTGTGACTGAGCAAAATGTGACTCGCTTAACTTTTGGTGGTACTTTTCTTACGGACGTTTTTGTTGGCCGTTTTATTTTCTCCAAATTGTATATTATTAAAAGAAAGCCCCAATCTTGAATGCTACTTCAGCAGATTAATATGAGGGAATAATATTTATTAGgacttttgatgtacagtgccttccgaaagtatttacaccccttgactttttaagtattttgttgtgttacagcctgaatttaaaagggattcaatttagattttgtgtcactgatctacacacaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922121 lncRNA upstream 34500 46966668 ~ 46967642 (+) True G810485
TU921959 lncRNA upstream 210083 46738526 ~ 46792059 (+) True G810345
TU921781 lncRNA upstream 357540 46643484 ~ 46644602 (+) True G810178
TU921880 lncRNA upstream 368121 46629478 ~ 46634021 (+) True G810273
TU921872 lncRNA upstream 384182 46606473 ~ 46617960 (+) True G810265
TU922728 lncRNA downstream 3049 47098450 ~ 47098729 (+) True G811029
TU922799 lncRNA downstream 4713 47100114 ~ 47100348 (+) True G811090
TU922767 lncRNA downstream 18769 47114170 ~ 47115950 (+) True G811067
TU922823 lncRNA downstream 50395 47145796 ~ 47146413 (+) True G811108
TU922879 lncRNA downstream 156409 47251810 ~ 47252040 (+) True G811161
XM_021615940.2 mRNA upstream 290101 46657987 ~ 46712041 (+) True LOC110532228
XM_036988155.1 mRNA upstream 359260 46639394 ~ 46642882 (+) False LOC110532227
XM_036988156.1 mRNA upstream 359260 46639421 ~ 46642882 (+) True LOC110532227
XM_036986948.1 mRNA upstream 371474 46601814 ~ 46630668 (+) True LOC110532224
XM_021615928.2 mRNA upstream 613004 46386833 ~ 46389138 (+) True LOC110532221
XR_005053450.1 mRNA downstream 12950 47108351 ~ 47111306 (+) True LOC118966184
XM_036988172.1 mRNA downstream 54545 47149946 ~ 47181808 (+) False klhl17
XM_036988173.1 mRNA downstream 54545 47149946 ~ 47181808 (+) False klhl17
XM_036988174.1 mRNA downstream 54545 47149946 ~ 47181808 (+) False klhl17
XM_036988176.1 mRNA downstream 54546 47149947 ~ 47181808 (+) False klhl17
TU921250 other upstream 866410 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2549065 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2806101 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4653356 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4669704 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 886600 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1450053 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1864348 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1907918 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 2019736 49115137 ~ 49115618 (+) True G813139

Expression Profile