RNA id: XM_036988172.1


Basic Information

Item Value
RNA id XM_036988172.1
length 5234
RNA type mRNA
GC content 0.48
exon number 14
gene id klhl17
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47149946 ~ 47181808 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCAAATCGCAAGGTCCATGGACGTTGGCGTCGGACGGTGCTCACTGGGCTGCAGCCGCACTGTCGATTTAAGGTGGTCTAGATAGCAACTTGGACATACCGGTAGTTATAATTTATGAACGTCACAAACGCGTTTTACAATTACACAGCCAACAAACATTTCCTGCCTAAATTTCGTTTTATCCACGCGGCAAGATAGTATCTAAGCATCACTGCTGCAGGTCCACCTTAACATTTGATGTCACTCATTGCTCATGCAGTTTGCATTTACGTACGTCAACAACATGATTGAATAGAGGCTTTCTTCCTGTCGTATGCTTTACTCATATGGACCGAGACAGGCAGTAGAGTTTATCAATTTGGATGCATCTCGTGTTGTTTTCACGTTCCCCATCATTTCAGTGAAGAGGGGCGACAAAACCGCAACGTTTATCACCGGGATTAGGGCCTTGTCTGGGGTGAGCAGATTATCCTGCACTGCCGACTTGTTGAAGTAGAAATCAtcatccaaatcgagTCGCCCAGAGTGAGGCCCAAGCAGGAGCCGGCTGCTGCTGACCACGGCACCATGATGGAGGGGGGCATGCAGCTGCTGAACCGTGACGGCCACAGCATCTCGCACAACTCCAAGCGCCACTACCACGACTCGTTTGTGTCCATGAACAGGATGCGCCAGCGTGGCCTGCTCTGCGACATCGTGCTGCACGTCTCCAACAAGGAGATCAAGGCGCACAAGGTGGTGCTGGCCTCCTGCAGTCCCTACTTCCATGCCATGTTTACAAGTcaccaggtgaggtgtgtgtCCAAGTTTTCCTCCTCCATCCTGCAGCTCAGACTAGAGCTTTGTGAGGATGAGATGTCGGAGAGTCGTCAGACCCACGTGACCCTGCATGACATTGACCCCCAGGCGTTGGAACAGCTGGTTCAGTATGCCTACACGGCAGAAATCGTGGTGGGGGAGGGCAACGTGCAGACATTGCTTCCAGCGGCCAGCCTGCTGCAGCTCAACGGGGTGAGGGACGCCTGCTGTAAGTTCCTCCTCAGCCAGCTGGACCCTTCCAACTGCCTGGGCATCCGCAGCTTTGCCGACACGCACTCCTGCAGCGACCTGCTCAAGTCGGCGCACAAGTACGTCCTGCAGCACTTTGTGGAGGTGTCCAAGACTGAGGAGTTCATGCTGCTGCCGCTAAAGCAGGTATTAGACCTGATCTCCAGTGACAACCTGAACGTACCGTCAGAAGAGGAGGTATACCGGGCTGTGCTGAGCTGGGTCAAACACGACATAGATGGGCGCAGGCAGCACGTACCCTGGCTGATGAAGTGCGTGCGTCTGCCCCTGCTGCGGAGGGATTTCCTCATGAGCAACGTGGACACGGAGCTGCTGGTGCGCCACCACTCTGAGTGCAAGGACCTGCTCATCGAGGCCCTCAAGTACCATCTTATGCCCGAGCAGAGGGGTGTGCTGAGTAACAGCCGTACCCGGCCGCGCCGCTGCGAGGGCGCCAGCCCCGTGCTCTTCGCCGTCGGTCAGTGTGCCCCCGAGGTTACCCACCAGGGTGGCGGCAGTCTGTTTGCTATCCACGGTGACTGCGAGGCCTACGACACGCGGACTGACCGATGGCACATGGTGGCATCCATGTCCACTCGGCGGGCACGTGTGGGCGTGGCGGCCATTGGCAACAAGCTGTACGCTGTGGGAGGGTATGACGGCACCTCAGATTTGGCCACAGTGGAGTCCTACGACCCTGTCACCAACTCCTGGCAGCCTGAGGTTTCAATGGGGACGCGACGGAGCTGTTTGGGCGTGGCAGTGTTGCACGGCCTCCTGTACGCCGCCGGTGGTTACGACGGAGCTTCCTGTCTCAACAGTGCAGAGCGGTACGACCCTCTCACCAGTACCTGGACCTCCATCGCTGCCATGAGCACCCGAAGGAGATACGTTCGTGTGGCCACTCTAGatGGCAGTCTGTATGCAGTAGGAGGATATGACAGCTCCTCACACCTAGCAACAGTGGAAAAATATGAACCACAgAGTAACGCGTGGACAGCCATCGCCAATATGCTGAGTCGACGCAGCAGTGCCGGGGTGGCCGTGCTGGAGGGCATGCTCTATGTCGCCGGGGGCAACGATGGCACCAGCTGCCTAAACTCGGTGGAGCGATTCAATCCCAAGACCAACGCCTGGGAGGGTGTGGCGCCCATGAACATCCGCAGGAGTACCCACGACCTGGTGGCTATGGACGGCTGGCTGTACGCGGTGGGCGGCAACGATGGCAGCTCCAGCCTCAACTCCATTGAGAAGTACAACCCGCGCAGCAACAAGTGGGTGGCGGCCTCCTGCATGTTCACGCGGCGCAGCAGTGTGGGGGTGGCCGTCCTAGAGCTGCTCAACTTCCCGCCGCCTTCGTCGCCCACACTCTCTGTGTCCTCCACCAGCCTTTGACACGGGGCTAAGCTCTGGCTGACCTCAGCCTCAACCTCGGCCTTGGTTGCCACCGCACAGCCAGGCCCCAGCAAGAGACGCAACTGCTCTGTgtgaagaggagggagtgagaggatgCATATACTTGAATCAGGTagcgagagggagagtggagaaaATGGcttgagagagagtgggaggggtacagtttgagagagagtggagagaagggcttgagagagagtgggaggggtacagtttgagggagagtggagagaagggcttgagagagagtgggaggggtacagtttgagggagagtggagagaagggATTGAGAGACTGGGAGGGGTACAGTTTGAGGGAGAAGAGGTGATGGGATGAGCGAGTGAGGAAGagtgaaagatggagagagaaacgcACAGAGGGGGCTGCTGGATCTGGTCTCTTTCCCTGAAGTCTCACTGTATTACCGTAAAGATACCAGCTTCTAGTCTATTGAAGAACACAGGAGAGTTTTCCTCAGATAAAGAGGTTGGGAAAAAAACACCATTTGCAATCCAATACCGTCTCTGAACCGATTTTAACTTAGGAATGTAGCTATTGACTGGTTCTGCCATGCATGTTTACTGACATTGTGTCCTGGCAGGCAGGAATAAAAATGAGTAGTGCAGCTGTATGTGTCACACTAGGTGGCATTAACGGGCAATGTTGTTTACCGTCCTACCCTACGGACGAGCCTTGTGTAATAGAGTGTTGCCCCTAGACATTTTCCAGCATTTCCCcttaaatggttaaggttagtattgaggaggggaagctgatcctagatctgtacctaaggAAAACTTCAACCAACCAgctggagaagaagaaaaaaaagaatgtaGCTATTGATTCGAGATCTATCGTTACTCTAAACTGTAAATTAGTttaatttctttaaaaaatatataagaaCAGATAATATGATGTTGAATTAtttattaaatgtaaaaaaaatatatatatatagctaatATATTCCGACAATTTCAAAGATGCTTTGTGAAAAGCAAATGGACCACTGCTACGACTCGTATTATtttcattttgttgtgttaacgTCGTGCATATCATTGATGGAAGTGTGTCCGAGAGGATGTCAAAAGTGGGAAGTTGTTCAGTTTGAGCGTTGAGTATATCAGAGTGAAGGATTGATAAGGATTTTTTTAAACTGATGAAGATATCAGGGcccgtattcataaagtgtctcagggtaggaatgctgatctaggttCCCCCTTATTCAGAATGATTTAAAaggataaactgatcctagatcagcattcctactctgagacactttttgAAGACGGGCAGAGGTCAACTGAAATATCTTTTATTATTTATAAAGGACAACAGTTAAAAGAAAGAGGTTTATTTTGTTCATGCAGTGTTTATTCTTTTGCCGGTTGGTACCTTGACTGAAAATGTTAAATATTTTTCAAAAGTAGCCTTGTCACTGCCACATGTATTTCACAACTGATGTCATTAGTAGTTATGGCAACTGATGTCCAATATGGTTGTATGGAAGGCTATGGTATGCAAGCTTGCTTGTCCGCTAGCTAATTAGAAGACCCCAATCCATTGTATAGATCATTATCATTCATAAACACATAGTGGTATCACGATCATGACAGCTTTGGAATGGCTAAAGAGCAGAAGGTTCAAGTAATGTGTAGGCAAATTAACACAACACTAATCTTAATACTTAAGACTAGCTGCGGCAATGTCAATGTGGAAACATTTATGGTGCTTTCATTTTGTGTTACTTACTCATCATTTTGTACTTTCCCTCATCATACCTCTTCCTGTATTGTTGAAAAGGATCCAAAGTTACCACAGCAATGTTTACGTAGTAAACGTGTGACAACATGTAGTATAACTCTAAGCTCTAACGATACTCTGGAAAACGTCTATCAGATAATACCATTCTTTGGAAGTTCCACAAAATGGCACACATCAAAGCAAAGGCTGATTGGCTAAGGAAATGAAGCTGTTTCTACATACTCAATACTGATACTTTACCTGAGGTTAAAGAGCTGTGTCAGCCACAACATGTCCTAATTTTAGTTTTTGACTCGTCACAGTTAGCTAGGTTCAATAAATAGGCTATGTAGAGCAGTGTGATCAAATGTAAAACTTCTGAGaagttatttattttccttttttcaAAGGATTTTGTTGATCTGGTTTTGTTTTTACcgaaccccatctctctccccccccccccccccccccccccccaccccagtaATGGTGAAGTGTTTTGTCCCCAAATCGCAAAAGTGGTTGCAGTGATGTCTTCTGTGACGTCATGGTCAGGTTGTATACAGATTGTTTTAAGAGGTCTTTTTAGCGACCAGAAAAAAACTTATTGGTTGTAATCTGGTATCTAACCAGGCGTCTCTACAACCAGAAAACCTATTTACAAccagaaaatgacgtcattataACATTCCATGCCATGCCAAATTTTACACGGTGGGTTCGTGTGAGCTCAAAATGTACCATGAGTGAAATCTCCACACAAGAACTTGGCCTCCATGTAGTTGAATCAAATGTAACGAAGGAATTGCCTAAATTCTCGGATTGAATGCATTGTCAATGTGACTGTAGCTTTTTTAGTTAACACATTATAGTTCAATGTGACCTGCATCGTTTATTTATATGTTATATTTATCgagaaaatgtatggagaaaCGTTGCACTATTGTGAAATGGAGCAATACACTGTgtagaaaataaataaagatgCTTTCAGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU922823 lncRNA upstream 3533 47145796 ~ 47146413 (+) True G811108
TU922767 lncRNA upstream 33996 47114170 ~ 47115950 (+) True G811067
TU922799 lncRNA upstream 49598 47100114 ~ 47100348 (+) True G811090
TU922728 lncRNA upstream 51217 47098450 ~ 47098729 (+) True G811029
TU922792 lncRNA upstream 64391 47084394 ~ 47085555 (+) True G811083
TU922879 lncRNA downstream 70002 47251810 ~ 47252040 (+) True G811161
TU922882 lncRNA downstream 75015 47256823 ~ 47257061 (+) True G811164
TU922886 lncRNA downstream 79277 47261085 ~ 47261350 (+) True G811168
TU922891 lncRNA downstream 89317 47271125 ~ 47271346 (+) True G811173
TU923126 lncRNA downstream 132341 47314149 ~ 47314379 (+) True G811382
XR_005053450.1 mRNA upstream 38640 47108351 ~ 47111306 (+) True LOC118966184
XM_036988165.1 mRNA upstream 54545 47002142 ~ 47095401 (+) False LOC110532233
XM_021615957.2 mRNA downstream 9927 47191735 ~ 47219174 (+) False LOC110532236
XM_036988179.1 mRNA downstream 9927 47191735 ~ 47219174 (+) True LOC110532236
XM_021615964.2 mRNA downstream 397534 47579342 ~ 47589218 (+) True LOC110532242
XM_021617147.2 mRNA downstream 444524 47626332 ~ 47627942 (+) True LOC110533017
XM_021617148.2 mRNA downstream 453562 47635370 ~ 47636413 (+) True LOC110533018
TU921250 other upstream 1014214 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 2696869 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 2953905 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 4801160 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 4817508 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 800193 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 1363646 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1777941 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1821511 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1933329 49115137 ~ 49115618 (+) True G813139

Expression Profile