RNA id: XM_021615964.2


Basic Information

Item Value
RNA id XM_021615964.2
length 5481
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110532242
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 47579342 ~ 47589218 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCAGAATTCTTAACTCCAATTTTCCTCTTTTCACAGACGCTATccatctcctcctcagtctgtctcAAAACGTTGTATCATCAGAGACTACATATCAGAACCCGCTTCATCAGTAGTAGCATAGATTCGATGGATAAACGAGGATAAAATAGCTATTATTGTTGGAACTTTAAAGGCAatcaaaaaaaacatttcagtgtCGTAAAAATGATCATGCGACTGAACCAATTCCGACACTTCCGGTTTCTGTCAACATCATTTACGCTAATTTCAGTAAATCCAAAAGTGTCAACGATAGATTGGTGAGTTGCTTGAACAAAGTAATCCACTTCAACAAGGAATGAAATCTCACAACTGCTAGACACAAGCAACAAATGAGCAACAATTGCACTCAATGGACGTATTGCCACGATGTGAGAAACAAATGCAAAGTGTCGCCTAATTTGCATCGCAACAATGCTAGTTTGCAACCaccatagctagctaacgttaaataGTAACAGTTAGGTTGTTACAGTCAGTAGCTTGTTATTGTAAGCGTTGTTAGATTTGACAGTAAGCAATGTTTGACATGGAATGTATGTTGCTCTTGGTTGGATAGCAACATAGCTAGTCATACAATATTTGAGTACCAGTTtactagttagctaactagctagtaaaGAGCTAGCTACCAGTTTAGCTAATTTCACCAGTGCGTTGCTAGCGaaaggttagctagctagttgtcaACAGGAAATACAACACTTCACACATTTAGCGAAATACTTTAAGTGGTAATCTAGCTAGTCTGTTAACGTTGGTTTTGGTCAGATTAGAATGGAGAACCAACTTTGACCGTCCATTTTGTTTGTAGTCATTATCTAACGTAAGCTACTTAGCTCATTAACACGAGTTGCAAACTTGAGTTAAAGTGACTCTTAAGCCTAAATTCAAAATGTGGCTCCAGCAAAGACTAAAGGGCCTACCAGGTGTGCTGTCAAGCAGCTGGGCTAGAAGAATGCTCATTGGACTGCTGGTTTTCCTAATCTTCTACTGGTATCTTAGCTCAGAGGGCGCTTTGAGGTTGTTTAGTGGCTCAGGCCAATCTGGGGGGCCTGCCGGACAATGCCTCCAGACTGAGATCCACAGGTGGAAGTCACTGGTGGACCGGGGGGAGGGAATCTACAGCACTCCCCAGGAGAAAGCGGTCACACCTTTTGTCTCAGGTAACGGCCATTTCCTGGTGGACATTGACTCCAACAGACTGTGGGTGGCCTCGTCCTCCCAGCCCGGCTCGGCCCCTGTCCACCAGACTGAGTATTCGCCCATAGTGGGTGTCCACCTCCCTGGGAAGCGGGCCGAGGCGAGTGCAACCATGCTCTGGTTCCGCAAAGGGGCTGTCCTGTCCGTCCACTGTGTCCTCCCGGGGGATAGCTCCGGGTCAGCCCGTGACTGCCTCACCGTCCGAGAGGAGTTCATTGCCCACCGCAGCCGGCCCAACGTCTACCTCCAGAGGATCCACGTCAACAACCCCTCGGAGCGGGCCGCCACCCTGGAGGTTTCCACTGAACCGTCCTTGTTCGGGAGCAAGTTCTCAGCCAGCGTGGAGAAGGTGGAGGACAAAGAGGTGGTGCTGTCGTCGGGCCGCGTGGTTCTGCCGGAGAAGAACCAGATATTGCTGGTGGTGGTGGCCACCAAGAAGCTGGGCAGCCGCATCCAGGTGGCGGCCAAGTCGGAGTACGCAGAAAGTGTGCTGTCGGTGGTGTGGACGTCGGAGCCCATTGAGTCGACCAAGTTGCAGGAGACCTTCACTAGGCTTAGAGAGGGGGCCAAGAAAGAGCTGGGCGAGCTGCTGAGGGCTAACATAGAAGATCTGGTCCAGGACCACCAACAGGCCTGGATGGACCTCTTCATCTCAGGGGTGGAGATGCGTAAGATCACTGACGCGCATACGCCATCCAGCGCCACGGTCAACACCACACTCTACTACGTCCTCTCGGCCTCGCCGGCACCCCTGCTAGACCGCCGCCTGGGCCCTGAAGAACGCGCCCGCCTGGAATCCAGCCTCAACTACGCCGACCACTGCTTTAGTGGGCATGCCACCATGCATGCCGATAACCTGTGGCCGGAGCGGGTCAGCAGTGTGGCCCAAGTCCTGCAGCTGGTCACCCTGTGGACCCTCACCCTGCAGAAGAGGGGTTGCAAGGTGCTTGTGGCGGCAGGTGCCCATGGCGTCATGCAGGGTGCCGTACTCAGCTTCGGAGGCCTCTCCTTCAACGAAAACCACCTGCAGTTCCAGGCGGACCCGGACGTGCTGCACAACAGCTATGCGCTGCGAGGCATCCACTACAACCAGGACCTGATCAACCTGGCTGTGCTTCTGGACGCCGAGGGTAAGCCCTTCCTGCACGTGTCGGTCAAACCCTTCCTGCATGTGTCGGTCAAGCCCCAGGAGAAACCCGTAGCGCTGTACGCCTGCGAGGCGGGCTGCCTCAACGAGCCGGTGGAGCTGACGTCGTCAATGGTAGAGTCCAAGGGCCACGTGTTCCCGGTGATGGTGACGCAGCCCATCACACCACTGCTCTACATATCCACGGACCTGCGCCACCTGCAGGACCTGCGGCACACACTGCACCTCAAAGCCATCCTGGCACACGAGGAGCACATGGCCAAGCAGGACCCGGGCCTGCCCTTCCTCTTTTGGTTCGGCGTGGCTTCTCTCATCACCCTCTTCCACCTCTTCCTCTTCAAACTCATCTACAATGAGTACTGCGGCCCCAGCGCCAAGCCCCTCTTCAGGAGCAAGGTGACGAAGCCAAGTGAGGAAATGGAAGCTTAGGAAGCAGCCATGACATCACAGGTGCAGAGTAGCAGCCAGCGATGGCAGCATGAGACAAATTACATTTCCATAAagtgtgttactgttcatgtCATTGTTTGTCAATGATTTGTATTGAGATGGTCAACAATGTGTATTTGACTTTTGACATGTTGGAGCTGAATTCAGAGAAACATGTTGAAGCTGAATTCAGAGAATGAAGCTCACCTCACCTAATGACCTCTTTCATTGGCAAGGCTAACGAAAGTCTGTCACTGTTTACAATGCTTCCATTTATTTTGGCTGGAAGACCCCCTCGGTTTGAACCAAGAATAGGGATTCTATTTAAATGGTTCTAGACATAGCTTTGTTTTGTTTCTACCATATGGAATTCTGAAAAATGTCAGTTATCCCTTCACCTTTTTTCAAGATGGTGGAAACCTAACCCAAgctacacacatatatattttaCCCTGCgatcataaccaagtgggaaggtggtatttACCGCATACGACTGGGGAAAATCCACTTGAATgcccctccaactggtaattactagagGAAAACTTGTTTATCATCCCTGAGCTCCTacttctcccacatgctgacctctgacGTCACCTACAAAGGAAATGACCTCGATAACAGAATTTTCGGCAATTTAAtccaacaaaacattatttataaaaagcaatCTATTAATATTGTTTTTGAACACCATAATTTgataaactaaaagtacagctattAACGCTGTGGTTGACTCcgcttgttggccattagccaatctGCGTTTGTCAACGAGTTCAATGCATGTGAACacatccaactggtatttacgaCTTCACAAGTGGTTATTATTGCAGCTTTACGAAATCATCTCCATTAAAAATGGATTGAGATGTAAACATTGACATTTAAATGAGCCATGGTTCTTTTAGTTGGTTTACTTAAATGGGTTTTGTAGCCTGTATGTTTCCAGTTTCCACTGCCACTTCACACTGTTCACTCTGACACATTAAACCAATAGAATTACATTTGGACATGTAGTAGATTTGTCTACTTCATATAGGCTACTCTTAACATTTAAATGTGTGGTTGCAGCACATTATGTTAATTGATCCACCATGATTTAGTGAAATAATGCACATTAACTTAATGTTGTTTAAATACTCCACAATTACTAGATAAGCTGAGTTTCTACAACTCTGATTTATTGTGAAGTGTGACTTAATTGTTTTCTtcagtttttgtgttttttttttgcatttattGTTCATCTTTGTTTATATAGCATTTTTAAGGGCTTTTTTCGCATCAGTTATTTTGTTTGTAACTAACTACTGAGTGTGCCTTAACAAGTTTAATTTATTCTGATTACACCTAGAATTTGGTTGGATTGTATTTGAATATTGTATGATAATGTGATTTGGGGGAAAATATGTTGTAAGTTGATTTCAACTTGGATAAAGAATAAATGTATACAAAGAATTTGAATTAAGATGTAAATATGGTAAACAATTTCTGACAGTATACATTAACTTGTTTGTGAATTGAAAGTGAAATCTGTATTTCTAATCAGTTATTAGGCTCTATGCACGTGTGAAGGGGTTTTAATTATGCTTTTAATTAAATTGGTTTAATTACCAAAGGATGGTATATAGCTCTTAAACTACATGTTGTTTTCCACAAAATTGAATGTCCTTTGCGTTCTCTCACCCCACCAAAAATAAAATGATATCAAAGATGGTCAAAACCCACAAGGCCTAATTAGTAATGCAACATGGGGTTTAAATGCATGACAATATGTATTTCTCTGATTTTCCTTTTATTATGGAGCAGACACTGAATTAGGCAAATCAATAACTGCATTCTAGTTATAATTTCCCTTGGTCCCTTGTTCCATTATTCGGCACACTGTAATTTCCCCTTATTTCCCtttttatataagtattcaagAATAGATAAGCAAATATTCAAGAGTGGATGCAGCTGTCATTGAGACCCATATACAGCAAAAGCAATTACACACTATTCATTGAagatgcaatatgcagaaatcgcttctccatttcctggttgctgaaATTCTACTGGTTTTCCTAATTTCAGTGTGTGTGACAAAACaaacaagtatagtgtagagaatcattgtaccatttaCACcgctattttccataaccaaaaaagttttttcagctgtttgaagctggattacaaaaccgaaagtagaagatgcaaaaactaaacttacgCACAGGAAGGATAGAAATATTGCACATAGAACATGTCTACTTCTTACATTTGCGTTCATTGAGAATGACAGATGTATAAATCATCATTTtgatgtgaatttggttgggtttcccaaaaagttacatattgcagattTACTTCCTCACTTCATGGAAACACAAATGTTCAACTAATTTAGGAGATTTTCTGATAAAGGAAAACACAAATCATTAAATAAGCAAGAAACTCAATAGCAGTCCATAGATTTGCGTGCAGGTAAGATTATGCCCAGCAGTAGCCAACTTGTTACCTCAATGTATGTTGGAACGAAATATATTGAGTGTAATAACACGGGATATTTTAACTATCTTAATTTGATGGGAAATTGTTGATTAGCCCGTTTTGTAGATTGTCGTCAAAAATGTCAATATGAACATGTATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU923452 lncRNA upstream 3981 47572274 ~ 47575361 (+) True G811690
TU923435 lncRNA upstream 37510 47541438 ~ 47541832 (+) True G811674
TU923429 lncRNA upstream 44443 47534659 ~ 47534899 (+) True G811668
TU923244 lncRNA upstream 168116 47409413 ~ 47411226 (+) False G811492
TU923240 lncRNA upstream 168116 47409448 ~ 47411226 (+) False G811492
TU923681 lncRNA downstream 118144 47707362 ~ 47766995 (+) True G811875
TU923683 lncRNA downstream 131576 47720794 ~ 47731492 (+) True G811877
TU923862 lncRNA downstream 314166 47903384 ~ 47927961 (+) True G812051
TU923865 lncRNA downstream 323715 47912933 ~ 47919012 (+) True G812052
TU923928 lncRNA downstream 340897 47930115 ~ 47930416 (+) True G812109
XM_021615957.2 mRNA upstream 360168 47191735 ~ 47219174 (+) False LOC110532236
XM_036988179.1 mRNA upstream 360168 47191735 ~ 47219174 (+) True LOC110532236
XM_036988173.1 mRNA upstream 397534 47149946 ~ 47181808 (+) False klhl17
XM_021617147.2 mRNA downstream 37114 47626332 ~ 47627942 (+) True LOC110533017
XM_021617148.2 mRNA downstream 46152 47635370 ~ 47636413 (+) True LOC110533018
XM_036988182.1 mRNA downstream 90322 47679540 ~ 47694148 (+) False LOC110532243
XM_036988183.1 mRNA downstream 90322 47679540 ~ 47694148 (+) False LOC110532243
XM_036988184.1 mRNA downstream 90322 47679540 ~ 47694148 (+) True LOC110532243
TU921250 other upstream 1443610 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 3126265 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 3383301 44195715 ~ 44196041 (+) True G807677
TU916660 other upstream 5230556 42346176 ~ 42348786 (+) True G805600
TU916494 other upstream 5246904 42332093 ~ 42332438 (+) True G805451
TU923963 other downstream 392783 47982001 ~ 47982301 (+) True G812143
TU924562 other downstream 956236 48545454 ~ 48570593 (+) True G812688
TU924989 other downstream 1370531 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 1414101 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 1525919 49115137 ~ 49115618 (+) True G813139

Expression Profile