RNA id: XM_021616000.2



Basic Information


Item Value
RNA id XM_021616000.2
length 1266
RNA type mRNA
GC content 0.44
exon number 9
gene id dpm1
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48522181 ~ 48529491 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TTTTACAACGCACCCGCATCCGGCTCAACAACATTCCAACCAACATGGCAAGCCGGAAAGGTTCACAGCAAAGCCGGGGAGATGGTGATAAATACTCGGTGTTGTTGCCCACTTACAATGAACGAGAGAATCTACCGCTTATTGTGTGGCTATTGGTAAAATACTTCGGTGAAAGTGGATACGAGTACGAGATTATTGTCATTGATGATGGAAGTCCAGATGGGACACTTGAGGTGGCAGAACAACTGCAGAAGATATACGGAGAGGACAAGATACTCCTTCGACCAAGAGCAAAGAAACTAGGGTTAGGAACTGCCTACATCCATGGCATTAAACATGCCAGAGGGAACTATGTCTTCATAATGGATGCAGACCTCTCCCATCATCCTAAATTTATTCCAGAATTCATAAAGAAACAGAGAGAAGGCGGGTATGACCTTGTGTCAGGCACCCGATACAGAGGAGATGGGGGCGTGTACGGATGGGACCTGCGCAGGAAACTCATCAGTCGGGGAGCGAACTATGTCACACAGGTGCTGCTGAGACCTGGGGCATCAGACCTGACTGGCAGCTTCAGGCTTTACAAGAAGGAGGTACTGGAGAGTCTGGTGGAGAGGTGTGTGTCCAGAGGCTACGTCTTTCAGATGGAGATGATTGTCCGTGCTAGACAGCTGAACTACACCATTGGAGAGGTTCCAATTTCGTTTGTGGATCGTGTTTATGGGGAGTCTAAACTGGGAGGAAATGAAATAGTGTCGTTCCTGAAAGGACTGCTTACTCTCTTCGCGACAACATGATTTATGATGCTCTAGGTTTGGACTCAGCACTGCTTTTTAGTTTTTCAGTCATGGCCTTCAATGCAGTAATGAACCTACATCAAAATCAGTAGCGTAAGACGCACCCCCACAGCACACGCGAGGCTGGGGCCCCCAAGCTTTAGGGAGCATCAAACAAACTTTTATTTTGGTTGGGGAAGATAGCAAGTGAACACTtcataagccatggcaaaatgtttagaattacaggaaatttgctttaaaactgcaacatcttctctaccccatggcaaaatgtatagaatagcATTAAATTAGCTATAAAACGGCATATTTTTCTCTCTGGCCCATGGAAAAATGTGTTGTTAAACTGCACTATGTCACTGATAAAAATGAGAAGGGGAAATGGACAGACTATGCTCCTTTCTATGAgtagttgattattgacaagtaaAAGCACAGAAAGTAATACATTAAAATATTAATTCTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU924703 lncRNA downstream 18092 48476591 ~ 48504089 (-) True G812814
TU924693 lncRNA downstream 63795 48458055 ~ 48458386 (-) True G812804
TU924646 lncRNA downstream 157564 48342608 ~ 48364617 (-) True LOC110532255
TU924395 lncRNA downstream 202052 48319549 ~ 48320129 (-) True G812551
TU924392 lncRNA downstream 202247 48319549 ~ 48319934 (-) False G812551
TU924727 lncRNA upstream 51789 48581278 ~ 48582776 (-) True G812837
TU924783 lncRNA upstream 77732 48607221 ~ 48607594 (-) True G812891
TU924792 lncRNA upstream 90905 48620394 ~ 48620623 (-) True G812900
TU925101 lncRNA upstream 105747 48635236 ~ 48636309 (-) True G813173
TU925147 lncRNA upstream 168966 48698455 ~ 48698681 (-) True G813217
XM_021615997.2 mRNA downstream 3031 48511624 ~ 48519150 (-) True adnpb
XM_021615998.2 mRNA downstream 3064 48511624 ~ 48519117 (-) False adnpb
XM_021615996.2 mRNA downstream 3274 48511624 ~ 48518907 (-) False adnpb
XM_021615995.2 mRNA downstream 15289 48469219 ~ 48506892 (-) True LOC110532261
XM_036988199.1 mRNA downstream 53453 48432135 ~ 48468728 (-) True arfgef2
XM_036988201.1 mRNA upstream 5063 48534552 ~ 48570617 (-) True LOC110532264
XM_021616002.2 mRNA upstream 42177 48571666 ~ 48581164 (-) True slc35c2
XM_021616003.2 mRNA upstream 56144 48585633 ~ 48588561 (-) True LOC110532266
XM_036988216.1 mRNA upstream 419386 48948875 ~ 48959112 (-) False LOC110532274
XM_021616023.2 mRNA upstream 432674 48962163 ~ 48979134 (-) True LOC110532275
TU924730 other downstream 13087 48508645 ~ 48509094 (-) True G812840
TU924356 other downstream 235751 48278174 ~ 48286430 (-) True LOC110532252
TU923584 other downstream 845532 47674390 ~ 47676649 (-) True LOC110531190
TU923583 other downstream 857227 47663065 ~ 47664954 (-) False LOC110531190
TU923044 other downstream 1340384 47178804 ~ 47181797 (-) True G811300
TU925294 other upstream 385946 48915435 ~ 48915704 (-) True G813357
TU926019 other upstream 934468 49463957 ~ 49466762 (-) True G814020
TU926169 other upstream 1205656 49735145 ~ 49736111 (-) True G814157
TU927144 other upstream 1688867 50218356 ~ 50218697 (-) True G815044
TU927145 other upstream 1689378 50218867 ~ 50219848 (-) True G815045

Expression Profile