RNA id: XM_036988214.1



Basic Information


Item Value
RNA id XM_036988214.1
length 6472
RNA type mRNA
GC content 0.53
exon number 25
gene id usp19
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 48747659 ~ 48782739 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGAGCGGTATTGATCCCCTGAGGAGAAGATGTCAACAAATGTCATATCCTATTAAATATCCCCTTATAATAACATCCCTGTAATAATCCTGTGTTACGGCGAAATTCATTTAAGCGATTGTTTGCGAACCGCCATGATAGAAGAAGAATAATGTGTTAGTAATCGCATTCCCTGCTTGCATAGCCGTCTGTAGAACCAACCAAGAAAACCTTGATCACATGGTGAGGGTTTGGTAGCTACAGTGCTGCCTTCAGGAAGTGCCTAGTCTTCAGAGTGGATTTCGGTTTGGACTGTTTTTGTTCCTAAACAAAGTGCGAGTCATTGCGCGGGGGCCGGTAAAGTAGGTTGAAGCGATTGATAGATTTGTTGTAATTTACGTCACATTTATTTGCTTTATATATTcggtatatatataaaaaaaatgggtCCTGGATAAAGAGAATTTTCGAGAAACACCGGAGTACGGGGTTTCGATTGCAAGCAGGGATGAGCAGAGGCCCGCGGCTGTTGCATTAAGCTTAGCGAGGACTGAAGAAGTAACGTTACGGACTCACCGGCATTGTGCCCAAAGACCCGGAGACCATACTCCAAATTATACACGTTTTGCCCCTTGATTCTGTTTTGGGAGAGTTCTAACTTGTTACATCGCCAAGATAGCTGGACCGGGCAGAAAGCGGCACACCTCAGAACCAGACCCCAGCAGCAGCGACGCAGGCGACGGGCGTCCCGTGAGCGCTAAGTGCCTGAAGATGGCCAGCAGCACTGAATCAGGCCGGCGGAATGGGGGTCAGCGCAGCGCCGATGACACCACCAGTAAGAAGAAGCAGAAGGACAGGGCCAACCAAGAGAGCAGGGAGGCCAagcgagcagcagcagcagcaggggaCAATGCAGAGCACAAGAAAGATGTGTTTGTGGACTGGAAGCAGAATGCGAATGAGGTGACAGTGAGGCTGCGCTGTGGAGAGGGGGTTCAGAGTGTGGAGGACGTCACCACTACCTTCACTGACACAGACTGTCAGGCCTGCTTCCCAGATGGGCGCCAGTGGGACTGTCACCTGCATGAGGAGATTGAGGGCTCCTGCAGCAAAGTGCAGTACAAAGAGAAGTACGGCTTCCTGCTTTTGGTCATGCACAAGAAGATCCCCTTTCACTCCTGGCCCTCCCTTAAGCAAACTAAAAAGGAGAAGGAGCCTGTGAACGTGCAAGCCAAGAACGGCAAAGAGCAGAAACCACCACCTGTGGTAAAGCCAGAGAAATCTGTCCCTGAGATGGCAGATAAGCCCAAACTGTCCACCCAGCCGTCTGCTCCGCCGGCACAGAGCGAACAGAGACGTGGCAAAGTTGAGCGAGGTGTCAAACGCACCATGAAGAACAAACCAGCAGCAGACAGACCAGAATCTGGGGTGAAGGCTACAGAAGATGAGGAGACCAAGCCTCTCAGTAAAGGGGACCTGCTTCAGGAGCCTAGTGCCAAGCGCACCGTCTGTCCCTCCAAGGACCCAACTTCACAGACACCCAGGGATACACACCCCAAGTCCACAGCCAATGGGAAACCGCACACCACTACTCCCACTGGCCGGGACCCCCAGACGTATACAGCTGGTGACAATCGTGCTGAGAGGCTAGGCAACGTTCATGAGTGTACAACACCCGAGATAGCCATCTGCCACACACAGCAGGAGATGAAAGTTCAGCTGGAGAAGTCCCCAGAGTCTGATTTCAAGGCTCGGGCAGGAGAGGAACGCATACCGTCAGCCACTGTGTCCAGTGCTGTGAGCAGCCACAAGGCTTTAGACTCCACAAACAGAACAGAGAGGCAAGGGGAGGCTGAGGCTGAGAGGACCGAATCCTCTACTGTAGTGAGAAAGTCCAAGGATGGGGCTGACCAGGCCACTCTAACACCAACCCAGCAGTCAGGATCAAGGGAGCCTGTGACTGCAACACCAAGCAAGCAGGCAGAGTTCACCAGCagtacagaggaggagaagaaggaccAGTCTAAAGAGGAACCTCTGGAGATTAAGCAGCTGGAAGCAGTTCCAGAGCCAATGGTGAACCTCAATTTTGTGAAGAACGACTCGTACGAGAAAGGCACAGACCTAATGGTGGTCAACGTTTACATGAAGAGCATCTGCAGAGAGACGGCCAGGGTGATCTTCAGAGAACAGGACTTCACCCTACTCTTCCAGACCAGCGATGCAAATTTCTTGCGCCTTCATGCGGACTGTGGAGCGAATACAGTTTTTAAGTGGCAAGTCAAACTCAGGAACCTCATCCAGCCTGAGCAGTCTACGTACTCCTTCACCCCGTCCCGGATAGACATCACTCTGAAGAAGAGACACAGCCAGCGCTGGGGGGGCCTAGAGGCCCCCGCTACACAAGTGGGGGGCGCCAAGGTTGCTGTGCCCTCCGGGCCGTCATCTCAGACTAGTCAGCCGGGCAGCAGCCAGCACACCCTCCCTGCCAAGGAGGAGCCCCCCCGGGCAGAAGACGGAGGCCTGGACAATGTGTCCGCCCGTACCGTCTCAGACCATGCCCCTATCAAACAGGAGCCTGCAGTCACGCCCAAGCCCACGTGTATGGTCCAGCCCATGACCCACGCGCCTCCTGCTGGCAGCGAGCGcagtgttgaggaggaggaggaggagaaggtgtgTGTGCCAGGCTTCACAGGCCTGGTCAACCTGGGCAACACATGCTTCATGAACAGCGTCATCCAGTCTCTGTCAAACACCCGTGAACTCAGGGACTACTTTCATGACCGGGCGTTTGAAACTGAGATCAACTGTAATAACCCATTGGGGACGGGTGGTCGGCTGGCCATCGGGTTCGCTGTGCTGCTGCGGGCTCTGTGGAAGGGTACCCACCATGCTTTCCAGCCCTCCAAGTTAAAGGCGATCGTGGCCAGTAAGGCCAGCCAGTTCACAGGCTATGCCCAGCACGATGCCCAAGAGTTCATGGCCTTCCTCCTGGATGGTCTCCATGAGGACCTGAACCGCATCCAGAACAAGCCCTACACAGAGACGGTGGACTCAGACGGACGGCTGGACGAGGTGGTGGCGGAGGAGGCGTGGCAGAGGCACAAGATGAGGAACGATTCGTTCATTGTGGACCTCTTCCAGGGCCAGTACAAGTCCAAGCTTGTCTGCCCTATGTGCTCCAAGGTTTCCATAACTTTTGACCCCTTCCTCTACCTGCCCGTGCCCCTGCCCCAGAAGCAGAAGGTCCTCACCGTGTTCTACTTTGCTAAAGAGCCTCATAAGAAACCCATCAAGTTCCTGGTGAGTGTGAGTAAAGAGAACTCGAGCACAGCCGAGGTCTTGGAGTCGATCTCTCGGAGTGTGAGGATCAAGGCAGAGAACCTGAGACTGGCAGAGGTGGTGAAGAGTCGCTTCCACAGGattttccttccctcccactccctGGACACGGTCTCCTCCTCAGACATGCTCTTCTGCTTTGAGGTGCTATCTAAAGAGCTGGCCAAGGAGAGGGTGGTGGTGCTCAGAGTCCAGCAGAGGCCTCAGGTCCCCAGTATCCCCATCTCGAAGTGTGCTGCCTGCCTGAAGCCTCCCCTCTCAGAGGAGGAGAAGCTGAAACGCTGCACCCGCTGCTACCGCGTGGGCTACTGCAATCAGGCTTGCCAGAAAAATCACTGGTCCAACCACAAGAGTCTGTGTCACCCCAACATGGAGAACGTGGGGCTTCCTTTCCTGGTCAGCGTCCCTGAGTCCAGACTCACCTACGCCCGTCTGTCCCAGCTGCTGGAAGGATACTCAAGGTATTCAGTGAACGTGTTCCAGCCTCCCTTCCAGTCTGGCAGAACGTCCCCAGAGGGCACCCAGTGCCGTGTTGACCTCCCCCCTCCAGCAGAGACCCATGATGGTGTGGGGCCAGGGGATGAAGCTAGGGGCGGTGGGGTGGGGGACTCTGATCAGGAGAGCCCCTTTCTGGTCCCTGAGTCTCCATTAGAAACAGCCCAGGCTTCAGCACACCCAGCCGGAGATCCAGACGCCCTCTCCACCCGCACCATAGACTCTGGCTTCTCTGAGCCCTCCTCCTGCTCCCAGGACcccgagggagagaaggagacctCCTGTGAGAAGGCTGTCAGGCCAGAAGCTGCAGTGACAGGCTACCAGCAACCATCAGAATCTGCATCCAGCCACGCTTCTCAGTTCTACATCTCCATCCTCGACTCCAACAGCAAGGAGCAGAAACTGGAGGAAAGGGAAGAGGCTGTTCTGGACCTCCCTGACGAATCCACCCTGGCACTAGTGTGGAAGAACAACGAGCGTCTCAAGGAGTATGTGCTGGTCCGGTCCAAGGAGCTGGACTTTAAGGAGGACCCTGGGTCGGTCAGTGAGACGGCCAGGGCTGGACACTTCACCCTGGAGCAGTGCCTTAACCTCTTCACTAGGCCTGAAGTGCTGGCACCAGAGGAGGCATGgtactGTCCAAAGTGCCAGCAGCACAGGGAAGCCTCCAAGCAGCTGCTGCTGTGGCGTCTGCCCAACGTCCTCATCATCCAGCTCAAGCGCTTCTCCTTCCGCAGCTTCATCTGGAGGGACAAGATCAACGACATGGTCGACTTCCCTGTCAGGAACCTGGACCTCAGTAAGTTCTGTATTGGTCAGAAGGATGACATGCAGCAGCCGCCAATCTATGACCTCTATGCTGTCATTAATCACTACGGGGGTATGATCGGAGGTCACTACACAGCCTACGCACGCCTGCCCAGTGCCCAGAACAGCCAGCGCAGTGATGTCGGCTGGCGTCTGTTTGATGACAGCACAGTGACGACAGTTGAGGAGAACCAGGTGGTGACACGCTACGCCTACGTGCTGTTCTACCGCCGCCGCAACTCCCCCGTGGAACGACCACCTCGCTTCCTAGGGCCCCTCGGGGTCGAGTCCCCCACCGCTGCAGGAGCCACCGCCAGCCAGGCCTCTAGCCAGGCCCTCTTTGggacagacctggaccctgaaGGACCCCCTCCGCTGATCCCAGAAGTGACCTCTGAGCTGTTTGCACACTCTGGAGAATGTGCTACTCCGTCCTACAGCAACATGGAGGAGGTGGACTAGGGCATAGCTGAGGCGCCACCGACACGGCGTAAAGTTCCAGTTGTGGAAATattctcctcagtaaaagacacttCAGTGCTTACTAATTAACTCGGCATCTTTAGGGTGTCCCTCACTGGTGCAATGCTAGAAATTAAAGAACTGGTTCTGTGGCCGAAAGACCAGCACATGTACCCGTCACCACAGATGCGGTGGACAGACCCACAGACTCACACATtttccacgttcatctgtatttACACAACAACCGATCCAGACCAACTCATACTGTATATGTAGTAATATCCATGCAATGTATTTCCTTACACATACTAAGCGCACACACGCATACAAATGGCATGTTTGCACATACAACAAAAGCCTCCACCCCCCTGTTGTCCTAGAGCCTCTGGGTTGCAGCCCATTGTTGGCTGATAGAATGCACCTTTGTTTGGGTATCCCCTAAAATGCCACTTTAAATGACACCTATTTATCCCATGATCATGCTTTGGCTCAGAGGTCACAAAGGGAAGTCGCCAACACCAAACTAATTTCCCCCCCAGAACAACAACCTGTTGTGAATGAGGGGAAACCGTGAGGTGGGAGGATGGGAGATGTGTGTGTAAgcatttgtttttatttgataCTTCTCATTGAGGTATTGCCTGGTCTGATGTGTTTTGTAATTTCTGTTGGATTCTGTAAACTGGGTTGAAATTGTAGCAATTGATGTAAAAGTGTGACGGTGCAGAAATTTAAGGTAGACTCAGCGGTGTGACAGATGCAGAGAGTAAATGGCATAGTGGGTCTAATTCTGAAACTGAGTGTGGCCGCACTAGGCTAAGTTTCTCTGCTGTTTTGGGGCCTTGGCTACCACACTGTGAACAGCCTGAAGCGAACCCGTGCAGATACAGTGTGACCGTGTGAGAGCAAAGTGTTGCATGGTGGGGTCCCTAATAAATACTAAAGTGTTGCATCTCGCTCATCTCTCTGGTGCTGCTTATGGCCACGTCATTTCACAGAGTCTACCATTTTAAGTTTTTAACAAGTTACTGTCTTTCTGTTTACTACTTTCATACTCACCTGGATTTAGTTGCTTTCCtttagatttattttatttttacttggTAAATTATCCAATCCTGTGGATGCAATTTTTGGCAAGATACCGGCTTGATATACACTGAAATGTGCATGTTGATACACAGTAGCACTAGAATAGAATGCGGTTACCTCTCCTGCTACATATCTTTATTTCTGTTTGAGTGGACTGTCTtgtacacccctctcctcccttcctttgTAATGGACTGCATATATAAAGTCGGGATTAATGAGAATGCTGCTGTGAATATAATAAATGGTTTAATATAAATAAAACCCTTTTTTGAGAAGCGCTAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU924860 lncRNA upstream 5331 48741802 ~ 48742338 (+) True G812951
TU924612 lncRNA upstream 127611 48619769 ~ 48620058 (+) True LOC118966185
TU924551 lncRNA upstream 205971 48540338 ~ 48541698 (+) True G812684
TU924553 lncRNA upstream 208792 48538027 ~ 48538877 (+) False G812684
TU924550 lncRNA upstream 212798 48534571 ~ 48534871 (+) True G812683
TU924875 lncRNA downstream 13564 48796303 ~ 48796775 (+) True G812966
TU924963 lncRNA downstream 127437 48910176 ~ 48910471 (+) True G813047
TU924968 lncRNA downstream 132537 48915276 ~ 48915608 (+) True G813052
TU924976 lncRNA downstream 147477 48930216 ~ 48930427 (+) True G813060
TU924877 lncRNA downstream 156420 48939159 ~ 48939587 (+) True G812968
XM_021616006.2 mRNA upstream 145 48699212 ~ 48747524 (+) False lamb2
XM_021616007.2 mRNA upstream 145 48699212 ~ 48747524 (+) True lamb2
XM_036988208.1 mRNA upstream 49285 48644910 ~ 48698384 (+) False lamb2l
XM_021616021.2 mRNA downstream 217 48782956 ~ 48789745 (+) True si:dkey-32e6.3
XM_036988215.1 mRNA downstream 48330 48831069 ~ 48935332 (+) False klhdc8b
XR_005053268.1 mRNA downstream 126541 48909280 ~ 48933756 (+) True klhdc8b
XM_021616024.2 mRNA downstream 205703 48988442 ~ 48994535 (+) True LOC110532277
XM_021616025.2 mRNA downstream 211896 48994635 ~ 48998285 (+) True LOC110532278
TU924562 other upstream 177076 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 765368 47982001 ~ 47982301 (+) True G812143
TU921250 other upstream 2611937 46134731 ~ 46135732 (+) True G809685
TU919191 other upstream 4294592 44442662 ~ 44453077 (+) True G807841
TU919016 other upstream 4551628 44195715 ~ 44196041 (+) True G807677
TU924989 other downstream 177010 48959749 ~ 48959991 (+) True G813071
TU924996 other downstream 220580 49003319 ~ 49006710 (+) True G813074
TU925067 other downstream 332398 49115137 ~ 49115618 (+) True G813139
TU927553 other downstream 2013475 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 2013581 50796320 ~ 50800381 (+) True G815428

Expression Profile


XM_036988214.1 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 50.
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XM_036988214.1 Expression in each Bioproject

Bar chart with 21 bars.
XM_036988214.1 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 200.
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