RNA id: XM_036988229.1


Basic Information

Item Value
RNA id XM_036988229.1
length 3795
RNA type mRNA
GC content 0.56
exon number 9
gene id si:ch211-218g4.2
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49494307 ~ 49591982 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATATACCAGCCATGGATGAAGAACAGGCCGTGTGACGTTCActggtttgttttgtttgttgtttatttATTCTGTACATCCCTGGTTGAAGCTGAGGTGACCTGGTGACTCTTTGGCACAGATATCGTTCTCTGGATGGGACACAGGTCAAAGATGGCAGCCTGCTCCAGGGTCGAAGGCAGCCATGTTAGTGAAGGTGAACAGCATTGGCAGGAACCAGTCCGTGGTGCCCGCTAGCACCCTGCAcctcctccaccacaacaaccTCAGCCCTGGAAGCCCTGCTGTGTACCAGGTCCACTccgacagacccagccctgcagGCAAGATGGCTGCCCCCGTGGACCCCAAGCAAGCCTTCCACCTGAAGAAGGGAGACAATGGTAACTTCTGCCTGGTGATGCCCTCCACTGGCAGCAAGGTCCACCAGACCCCCCAGAGGTCTCAGGCTGGCACCCCCAGGCCCTCCTCGCCCCAGTACGGTGCCACTCCACCCATCTATGATGAACCCCCCATGGATCCACCTATCTATGATGAACCCCCCATGGAGGTAGAGGGGGCCCACCTCCTGAACAGGCCCTTCACCCCCTCCACCAGCCTACAGAGGGTCCGCCAGCCCCAATCCCACCCCCAGAACCAACCCCAGCAGCAGCCCAAGCTTCTCCAATACCCAGCCTCTCACCTGAGCTCCAAACACAAGAGAAACCCCTCCGCCACAGATTACAGCCCCGCTGGACGGGagtgcatcaaacacatggtcaaCGTGGACCCTGCCACCTGCAAACAGAGCCCCTTATCCCAGCCTGTCCAGACAGAGCAGGGCCCTGCCCCAGAGCCTGCCCtgcccccctctccatccccctccccagCCCCAGGTGTGACCCAGCCCAGGCCCAAGGAGGTGAGTCTAGAGAAGAAGCAGTCATGGCGTCTCCTGGAGGCCAGCGCGAGGAAGAACATGGAGGCCCGACACAGCCGACAGAACAGCCTGGCCTCCCAAGAGTACCCGGCACCGGCGGCCGTTACCTACCAGGACTCAGGCTACTCTACGGGGCCCTCGCCCAGCCTGAGGAGGAAGAACCGCAGGAGAGCCCTGGGCGGAGGGGCTGGGGGTGCAGGGCAGGGCCGGCCAGGCTCGGTGGGCAGCACTGGGGAGCTCAGTGCCCTGAATGAGAAGCTGATGGCAGAGATGCGAGCGGTGGTGAGTCGCTCAAACACCCTGCGTGGCAGCAAGGCCAGCCTGGACACAGAGATGTCTGAGGGGTCTGTACCACGGGCCCGTTCCCCCTTGAACTCCCTAAAGAAGCACGGGGGCCACAGCGCCTCTCGGGAGGACATCAGTGCCAGTAACCGCTCTCTGTATCGGGCCGGGAGCGGGAGTAACCACGGCGACATACCCCTCTCGCCCCTGGCGTCAGACGGCATGGTGCGTCAGAAACGGACCTATGAGAAGGTGGACACTCTGGAGAAAAGCATCACCAGCCAGAACAGCATGTCCTCCCCAGAGCCCCCCATGTCCCCCTCCCAGGCAGGAACACTGGAATCCAAGGCCCAGTCCGAGTCCTCATCACACGGGGGAGGTAATGGTCACGGGGGCACCCGGGGTTCCCCCCATAGAGTTATCGtgactggagacagaggagaaggTGGGGGAGGTGGAAAAGGAGGTATGGGTTACCAGTACCCTTACACCACCCTCTGCAAACCTCCTCCAGACGCCAACATGGTGGACTGGGCCAGTAAGAACCTGAACCAACACACTCAGGGCCTGTTCCGCCGCCGCGTCTCCATCTCCAACATGCTCTCCTGGAACAGGGGCTCCATTAAGAAGCCCATGCTGATCACCAGCGACCGCACAGTCAAGAAGGAGGCCTGTGAGATGTTCAAACTGGTCCAGGCCTACATGGGGGACCGTCCAGCCCGGCTGGAGCGCCGTCACGCTGCCCTGCTGGTGGTCACTAAGTGCTGGGGCATGCAGGGCCTGAGGGACGAGTTGTACGTCCAGCTGGTCAGACAGACCACTGACAACCTGAACCTGAGAAGCCTGGAGGCCGGCTGGGAACTCATGGCCATCAGCCTGGCCTTCTTCTCCCCCTCACCCAAGTTCAGACGCTACCTGGAGGGGTACATTCAGAGACATCTAGAGCCCTCCAACGACAAGAAGATCATGCagcacattatggaacaacaggACATGAAGAACAAGAAGAATTCAAAGTCCCGGAAGAAGAGGAAGCAGAACaatgaggaggaagaagaggagggcCTGCCAATCAGCACTTATGCCAAGTACTGCTATCGCAAGCTGCAGAAGGTCGCCGTCACTGGGGTCAAAAAGGGTCTAAGGAAGCCCACCCTGGAGGAGTTAGACCAGGGGAGGAAAGCCATTGTGACCCCCTCCCTGTTCGGCAGTGCTCTGGAGGAGATCATGGAGCGTCAGAGTGAGCGGTTCCCGGAGCGCAGGCTCCCCTGGGTGCAGGTGCAGCTGTCCCAGTACGTCCTGGCCCTGGGAGGGGCCCAGACAGAGGGAATCTTCAGGGTGCCTGGAGATATTGACGAGGTGAATGCACTGAAGCTGCAGGTGGATCagtggaatattccagaaaaccTTGGTGACCCCAACGTCCCAGcgTCTCTGCTGAAGCTGTGGTACAGGGAGCTGGAGGAGCCAGTCATCCCTCAGACCTTCTATAAGCAGTGCGTCAGTAACTATGAGGATCCAGAGGCAGCGATCAGTGTGGTGCAGTCTCTGCCTGAGCTAAGCAGGCTGGTGCTCTGCTACTTTATACACTTCTTACAGGTGTTTGCCCAGCCcgtcaatgtgagtaagaccaaGATGGACGTGAACAACCTGGCCATGGTGATGGCTCCCAACTGTCTCCGCTGCCAGTCGGATGACCCGCGCATCATCTTTGAGAACACACGGAAAGAGATGTCCTTCTTACGCATGCTCATTGTTCACCTGGACACCAGCTTTGTCAAGGGCATCATCTGAGGAGGCCTCCTCTAGACCGCTCACACCACTCTCTACTGCCACCTCACCCACAACAAGCCCGCTGTTCCTTCACACATGTCACATCTCAACCTTCTCTCTGGTTCACTAACACCACATTATGAGGACTACAGACAGTGGACTGCCCAGAAAGTGACTGGAAATCAAGACAGATTTCCTGCTCTGAATCATCTCGTTTGAGACTTTGGGACAAGCTCACATGTGATGGTAATGGGAGACTGTTCATCAGTTTTAAAGCACACTGcaggacatactgtacatactatatGTATCTCCCCATGTTTCTGCTCCAAACACTGGACCGTGCTGGCGTGAGATTCAGCATATGAAGAGCAGTCACAATAGGAGACTGTGATGCACATTAAGCCAGAGTGCAGGGAGAAATCAAGACAAATCTCATTTGTAAATATGGGTTTTTAAAGGATTACTTCCTGCTTTGAGTGCCACATACATATCTGACGCTATGGTCATGAATTATGTTTCGTCATGTGTTCTGAaataacaaaatgaggtgaaacCCACTCTGTATTATCACCATTCTCTTTCCTTTATTGTAATAGTGTATTCAAGCAATGTTTTCCTTCTCATTCTAAGTTCATTTGGAATGCttttttgactaatttaatatgAATTCTGTCTGGGTTGACAGAGCTGCAGGATGAGTTGACAAAAAAGGTTTATGCTACTCGTGACCTCTCCACTGGCCTCAGAGACAGGTTCACTCTCTAGGTAAAAAAACCCCACATTTATTTCTGAATTAAAGTTTCTCTAGCAGGAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925705 lncRNA upstream 11905 49540170 ~ 49540477 (+) True G813732
TU925704 lncRNA upstream 12667 49539416 ~ 49539715 (+) True G813731
TU925694 lncRNA upstream 35127 49515895 ~ 49517255 (+) True G813723
TU925693 lncRNA upstream 37621 49514534 ~ 49514761 (+) True G813722
TU925691 lncRNA upstream 38770 49513401 ~ 49513612 (+) True G813720
TU925743 lncRNA downstream 9986 49601968 ~ 49602398 (+) True G813769
TU925769 lncRNA downstream 48238 49640220 ~ 49658591 (+) True G813789
TU925778 lncRNA downstream 65676 49657658 ~ 49690004 (+) True G813798
TU925803 lncRNA downstream 137426 49729408 ~ 49740600 (+) True G813822
TU925813 lncRNA downstream 158084 49750066 ~ 49785055 (+) True LOC110531195
XM_021616041.2 mRNA upstream 58595 49440880 ~ 49493787 (+) False sulf2b
XM_021616047.2 mRNA downstream 23656 49615638 ~ 49639251 (+) False phf20b
XM_021616048.2 mRNA downstream 23656 49615638 ~ 49639251 (+) True phf20b
XM_021616050.2 mRNA downstream 48426 49640408 ~ 49716462 (+) False ndrg3b
XM_021616051.2 mRNA downstream 48427 49640409 ~ 49716462 (+) False ndrg3b
XM_021616053.2 mRNA downstream 48428 49640410 ~ 49716462 (+) False ndrg3b
TU925067 other upstream 436764 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 545672 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 592391 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 981789 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1570081 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 1204232 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 1204338 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1486465 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1753390 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2731289 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile