RNA id: XM_036988234.1


Basic Information

Item Value
RNA id XM_036988234.1
length 2277
RNA type mRNA
GC content 0.47
exon number 13
gene id gss
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49788722 ~ 49797031 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACGGTAGTGAGTTTTGAAGAGAACGGAAGAGGCGTAGTCTTTGGTTTGCTCCCTAGTCCATGTTTATCCGTGGTGTTCATTCTTGAAGGGAAAAACatctgttttttgggggggggattgCCATTCCAGAGCACATCATCTGAGCATAATCGGCGTATAGAAGGACAGCTCTGTATCAGCCCAATGTCCCGTCAGAATCCAGTCGCGGTCGAGGCTAATCTCAATGGGaatccctgtctaaataaagGTGAACTGCAATGGCTGCCAACGGGATACCAGAGGATGTGTTGATGGATAATGATCTTATAAAGGACTTAGTGGATGTGGCAAAAGACTCAGCCCTTCTAAACGGAGTGTTGATGCGGACTAAAGAGACACCCAACTCATCAGAGgTGGTGACCTATGCACCGTTCACACTTTTCCCCTCGCCAGTGCCCAAGGATACCTTCCACCAGGCTCTAGCAGTACAAACGCACTACAACCGACTGGTGGACAAGATCAGCCAGGACTCCAGCTTCCTGGAGGAGGCTCTAGCCACCACCATCAAAGTGGATGATTTCACTGGGAGGTTGTTCAATATATACAGACATGTTTTACAGGAAGGCAAGATCCAGTCCATAGTTTTGGGTCTGAATCGCTCAGACTACATGCTGGACCAGAATGGGGATGGGAGTGCCTCCCTGAAGCAGATCGAGATCAATACCATTGCTGCCAGTTTTGGTGGTCTTGCCTCACACACGCCAAACGTCCACCGACACATCCTGAAGGTGGCTGGTCGGTTGGAGGATAGCAAGCGTATCCTAGACAATAACCCTTCTGCAGGTCTGGCGAAGGGCTTAGCTAAGGCCTGGGAACTCTATGGCTCAGAAAGGGCAGTAGTCTTGTATCTGGTTGAAGAGCTCCAAAGAAACATCTTCGACCATCGATATGTGGAGAATGAGCTATGGAAGAGAAATATTCCTGTAATACGAAGACAGTTTGAAGATGTAGCTAAGACGGGATTCCTTGATCAGGATAAGAGGCTGTTTGTAGATGGACGGGAGGTTGCTATTGTGTATTTCCGCAATGGGTACATGCCACAGAACTACACAGAACAGAACTGGGAGGCTCGTCTCATGATGGAACGCTCTATGGCTGTGAAATGTCCAGATATCAGTACCCACCTGGCTGGCACCAAGAAGGTGCAACAGGAACTGGCCAGACCGGGTGTTCTGGAGAGGTTCTTTCCTGGTGAACCTGACGTTGTGGACCAGATCCGGGCAACCTTTGCTGGGCTGTATACTCTAGACATGGGACCAGAAGGTGACAAGACTGTGGCTATGGCTTTGGCAAAACCAGACCAGTTTGTCCTGAAGCCACAGAGGGAAGGTGGGGGCAACAACCTCTATGGAGCTGAGATCTGTCAGGTACTGGAGGGTGTGAAGCAGAGCACAGAGAGGATGGCCTATATTCTGATGGACAAGGTTCAACCCCGCCCTGTACACAACTATCTCCTGAGACTGGGGACGCCACTCAAACTCAGCACCTGCCTAAGTGAGCTGGGTGTATTTGGGGCCTACGTCAGGCATGGGCAAGACATGGTGCTGAATGAGTGTGCTGGACATCTGCTGAGGACCAAAAGTGATGAACACTCTGATGGAGGTGTGGCTGCTGGAGTGGCAGTGCTAGACAATCCACTCCTCGTCTGACCGACACTGCCCTCTGTCACATTAATAGTGAAGCTGCACAGAAAGATGGTAGTAAGAAAAGTTAAACACACAAGTGCTCTTCTTTGACTGCAGAGAAAATTGCTGCTCCCCATTTATTTTAGATGTTTATGTGATACTTTTACTGTAGAATCAAATGTGTGCTCTTCGAGCTTGTGCAGATCAGGAATGAGCCTGATGTATGAAGAATGGCTGTGTGCGGACACTATGAAGTCTTACTGGCGCAATACATTTCTATCACTGCTCGGTAGACTTAAACAGCCAACAAATGAATGGAAACAGAAAATACGGAACTATGATTATTTCGCACCAAAAACTGTAGTATTCCAGATGTTGAATTGGAGAAACTGTTTTAATCGGGAAAGAAGAGAACCATTGCGAGGTAATATCCCTAGAGCAAATAATAGTATTAAGATTGTTTATGGGAATAATGGTAATAAATTGTTTTATTACTTTCAGacttttgtttttttgtatttattttaatatgCATTCATAATATACTGATGGGATTTGATGCAGTGGGTTACTGTATTGGCATTAGACAGATGAATAAACGTATCTGACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU925813 lncRNA upstream 3667 49750066 ~ 49785055 (+) True LOC110531195
TU925803 lncRNA upstream 48122 49729408 ~ 49740600 (+) True G813822
TU925778 lncRNA upstream 98718 49657658 ~ 49690004 (+) True G813798
TU925769 lncRNA upstream 130131 49640220 ~ 49658591 (+) True G813789
TU925743 lncRNA upstream 186324 49601968 ~ 49602398 (+) True G813769
TU925855 lncRNA downstream 14903 49811934 ~ 49812165 (+) True G813870
TU926240 lncRNA downstream 42007 49839038 ~ 49839290 (+) True G814225
TU926296 lncRNA downstream 82049 49879080 ~ 49879349 (+) True G814281
TU926333 lncRNA downstream 144438 49941469 ~ 49941746 (+) True G814313
TU926362 lncRNA downstream 187395 49984426 ~ 49984958 (+) True G814336
XM_036986951.1 mRNA upstream 38556 49745378 ~ 49750166 (+) False LOC110531195
XR_005053274.1 mRNA upstream 45396 49741863 ~ 49743326 (+) True LOC118966066
XM_021616057.2 mRNA upstream 51266 49725707 ~ 49737456 (+) True edem2
XM_021616056.2 mRNA upstream 63171 49719101 ~ 49725551 (+) True LOC110532294
XM_021616054.2 mRNA upstream 72260 49697443 ~ 49716462 (+) True ndrg3b
LOC110533019 mRNA downstream 3732 49800763 ~ 49803462 (+) True LOC110533019
XR_005053276.1 mRNA downstream 85125 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA downstream 85125 49882156 ~ 49917857 (+) True LOC118966067
XM_021616065.2 mRNA downstream 159810 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA downstream 159810 49956841 ~ 49968731 (+) True si:dkey-8e10.3
TU925067 other upstream 673104 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 782012 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 828731 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1218129 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1806421 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 999183 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 999289 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1281416 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1548341 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2526240 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile