RNA id: LOC110533019



Basic Information


Item Value
RNA id LOC110533019
length 1330
RNA type mRNA
GC content 0.49
exon number 12
gene id LOC110533019
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49800763 ~ 49803462 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGACCTATGCACAGTTCACACTTTTCCCCTCACCAGGATACCTTCCACCAGCCTCTAACAGTACAAACACACTACAACCGACTGGTGGACAAGATCAGCCAGGCTGGAGAACCTTCTAGCCAGGTTATACAGAGAGCTCCAATTTAttttaacagcactatcaaaGTGGATGATTTCACTGGCAGTTTATTCAACAAACACAGACATGGCATACAAGAGGGGAGGACCCAGTCCATAATCTTGGATCTGAATCGCTCAGACGACATGCTGGACCAGAATGGCTCCCTGAAACAGATCGAGATCAACACCATTGCTCCTGGTGGGTGTGGTGTTTCTGCATGCACACCAGACGTCCACCGGGATGCCTATTATTATTTCATCATTAGGCACATTCTGAAGAGGCCTGGTCAGCTGGATGAAAGCAAGCATGTCCTAAACAACAACCCTTCTGCAAGTCTGGCAAAGGGACTAGCTAAAGCTTGGGACCTCTACGGCTCGGAGAGGGCAGTGGTCCTGTTTCTGGTTGGAGCATTTTTGGCCATAGATATATTGAGAATGAGCTATGGAACAGaCAAATTCCTGTTATATGAAGACGGTTCGACGATGTATCGAAGATGGGATTCCTTGATGAAAACGAGGCTCTTTGTGTACAGATGGTGGTTGCTATTGTATATTTCCGCTATGGGTACATTCCTCAGAACTACACAGAACGGAGCTGGGAGGCTCGCCTCATGATGGAGCGCTCTCTGGCTGTGAAGTGTCCAGATATCAGTACCCACCTGGCTGGCACCAAGAAGGTCCAACAGGAACTGGGCAGACCTGGTGTTCTGGAGAGGTTCTTTCCTGGTGAACCTGATGTTGTGGATCAGATCCGGGCCACATTTGCTGGGCTGTATACATTAGACATGGGAACAGAAGGTGACAAGACTGTCTATGGCTTTGGCAAAACCAGACCAGTTTGTCCTGAAGCCACAGAGGGGAGGTGGGAGAATTCCTCCTCCTGTAGGCAATCACATCTACGGATCTGAAATCTTTCAGGTACTGAAGGGTGTGAAGGATGACATATAGAGGGCAGCTTACGTCTGGATGGACAAGATCCGGCCTGTGCACAACTACATCCTGGAACGGGGAACTCTGCTAAAACTCAGCACTTGCATATGTGAACTCTGCACATTTGGAGCTTATGTCAgAAATGTTCTGGATGGTGTTGTGGTGGCAGAATTTTCCACAGCAGTCAGTCACATTGTGCTGAGGACCAAGAGTGATGAGCTCTCTGATGGAGGTGTGGCTGCTGGAGTAACAGTCCAAGACAACCCACTCTTCGTCTGA

Function


GO:

id name namespace
GO:0006750 glutathione biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004363 glutathione synthase activity molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU925813 lncRNA upstream 15708 49750066 ~ 49785055 (+) True LOC110531195
TU925803 lncRNA upstream 60163 49729408 ~ 49740600 (+) True G813822
TU925778 lncRNA upstream 110759 49657658 ~ 49690004 (+) True G813798
TU925769 lncRNA upstream 142172 49640220 ~ 49658591 (+) True G813789
TU925743 lncRNA upstream 198365 49601968 ~ 49602398 (+) True G813769
TU925855 lncRNA downstream 8472 49811934 ~ 49812165 (+) True G813870
TU926240 lncRNA downstream 35576 49839038 ~ 49839290 (+) True G814225
TU926296 lncRNA downstream 75618 49879080 ~ 49879349 (+) True G814281
TU926333 lncRNA downstream 138007 49941469 ~ 49941746 (+) True G814313
TU926362 lncRNA downstream 180964 49984426 ~ 49984958 (+) True G814336
XM_021616063.2 mRNA upstream 3732 49788722 ~ 49797031 (+) False gss
XM_036988234.1 mRNA upstream 3732 49788722 ~ 49797031 (+) False gss
XM_036988235.1 mRNA upstream 3732 49788722 ~ 49797031 (+) True gss
XM_036986951.1 mRNA upstream 50597 49745378 ~ 49750166 (+) False LOC110531195
XR_005053274.1 mRNA upstream 57437 49741863 ~ 49743326 (+) True LOC118966066
XR_005053276.1 mRNA downstream 78694 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA downstream 78694 49882156 ~ 49917857 (+) True LOC118966067
XM_021616065.2 mRNA downstream 153379 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA downstream 153379 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XM_021616072.2 mRNA downstream 382003 50185465 ~ 50205006 (+) False LOC110532304
TU925067 other upstream 685145 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 794053 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 840772 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1230170 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1818462 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 992752 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 992858 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1274985 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1541910 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2519809 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile