RNA id: XM_021616065.2


Basic Information

Item Value
RNA id XM_021616065.2
length 2538
RNA type mRNA
GC content 0.46
exon number 4
gene id si:dkey-8e10.3
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 49956841 ~ 49968731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgggcaTGTGCCCATATTGGTACATCCAATAGTGACAGAACCTTTAATCTTCCAAGAGCAGTTAAGGTGCTTCTGCTTTATAAAGCagcatgtgtgtcagtgtgtgtgtcagtgtgtgtgtcagtgtgtgtgtaagagtgtgAGTGCCCTTTGCAGCAGCCAGTTTTGTAATCAGCTGTCGAAGTGGGCTCCGAGTCTTAGCTGTAGCCGAGTGGTAGCACTCTCCTCTAACCCTGGTCCACTCAGCCAGCCACACAGCCCTGTGATCCACAGCACAGCTGCAGTAAGatttgagacagagagagagagatgatcgaGCTGGGCCTTGCAGATGGCAGTCTGATCGATGAACTGATTGCGCTGACGGCTCAGAGCCTAAGCCACTTGGAGATCAAAGAGCACTTCAACATTATCAAGGAGATCGGCCGGGGGAAGTATGGCAAGGTTCTGCTGGTCACCCATCGCTGCAGGGGAACACCGATGGCTCTTAAAGTGATGCCAAAAGCCTCCACCAAGCTCCAGGGATTCTTACGGGAGTACTGCATCTCCTTGCACCTATCCTGCCACCCCTGCATCGTAGGTCTCTTCGGAATCGCCTTTCAATCTAATGAGCACTATGGCTTTGCCCAGGAGCTTGTTATTGGGAGGGACCTTTTTGCTGTCATCCAACCAAAAGTGGGTATCCCAGAGAATGCAGTGAAGCGCTGCGTCCTACAGATTGCCAGTGCCCTGGAGTTCATCCACGAGCACGGCCTGGTCCACCGCGACATCAAACCTGAGAACATCCTGCTGCTGGACAGCCACTGCTGCCGGGTAAAGCTGGCTGACTTCGGCCTGGCTCAGACGAGAGGCACTCTGATTCGCTTCATCTCCGGCACGCTGCCCTACATGGCCCCAGAGCTGTGTGCCGTTGCCCTGGAGGAGGGCCAGAAGGAGGTGACGGCGCCCCCGCTCAGCGTGGAGCCCAGCCTGGACACCTGGGCCTTCGGAGTGGTCATCTTTTGCATCCTCACTGGCTACTTCCCCTGGGAGCGCTGCGTGACCTCAGATGACTTCTACCAGGAGTTTGCTGATTGGTGCCAGGCACCCACCGTGGAGGAAGTTCCACCCTTGTGGAAGAGATTCACCCCGGCTGCCATGGAAATGTTCAGCAGGCTGTTGGAGCTCAATGCTAACAACAGAAGCACAGTAGGGGAGGTCAGGTCCTATGTGGAAAAGGACTGGTTGATGCCGACGCTAGTGGACACAAACGGACTGCAACCGGAGAATGGCAAGGTCAGTGCCACCTGCTCCACCCCTAGTGTGTGTAGGAGTAGTCCTGTCCACCAGGAGGTGGAGTAAATGTCTTCAGTGGAACGGTGTCTGAGGTATCTGTCTACACCTCCAGCTCATGGTATCAACTATCCAATTTACAGGGAGCAAGCACAAGGTGTGCATTCGACCCCACTCTTACCATGCACTGATAGGTAGGGTAACTGAATTATACTCAACGTCAGTCCAGAGAGCCACACAAGGGGAAAAAGCTCTGGTAGGATACGAGTGTACTGTAAAAGCAGCACTATTTGAGTGTGAGTGAGCTCATACTATTCTGTGTGTATGTACACAATATTGGTAACCTGATAAATTTAGCAATGTTACGAAAGAGTTTGTATCTACTGTAACACAAGAGCAGCTTATGCTATATTGTGTGTAACTACACAACGTTGGTGACCTGAGAAATATACTGTAACATAGAACTTGTACCTAGCATAGGAGCAGCTATTTTCAGAACAATGATTTATATTCTGTGTTTTAGAATCTCTCACTGCACAGAAGACAAGCATTATAATAATTTCATAGAGGGAGAGTGTGCACTGTGCGTTCAAGCTGGCTTAGTGGCAGTGTTCACTTTGGCAGTGCTCAAtgttctctcaaatgtttttgtAGTGTGTCACACTGTACAGGCTGTTCCGTGAATGAGGCTACCTCAGTTTGTCTATTTCTGTGCATACTCTCATTGTTCATGAAAGATTCATATTCAAATATAGACATACAGAAAATACATTAACTGTATAATGAATGTAATGTAATAGACTGAATATGAAATGGGTATGGGTAAATATCCAGAGTGTAATTTTTAGGTATTCCACAACTGACCCCAGAAAATGACTGTCACACTGAAAGCTGTTTCAAGTTCACATTGTTTCAAATCAACTTAATTTAAAGCAAAGGCAACAAATTGGGAGCTGCTGCATAACAATTAACTCTGTCTCCCTAAATAGAAATTGAAGTTCAAATCATCCTTTTTGTGCACTGTAAAAAAAGAGAAAGGTTGTTTTTACGGTATCTTATTGGCAAACAGGTACAGTATGTTACCGTAAATACCGTAAACTTTACAGTAGTATACTGTTAAACCAAAGTTTATTTGAAATTTATGGTAACATATTGTAACTTTGTTTTATTCGAATCAAGTACATAATTATTGTGTATAGGATGCACGTAAAGTTTTTGACACAGTGTTTGAGTATGCCTTTTGGTATGAACAAATAAACATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926333 lncRNA upstream 15095 49941469 ~ 49941746 (+) True G814313
TU926296 lncRNA upstream 77492 49879080 ~ 49879349 (+) True G814281
TU926240 lncRNA upstream 117551 49839038 ~ 49839290 (+) True G814225
TU925855 lncRNA upstream 144676 49811934 ~ 49812165 (+) True G813870
TU925813 lncRNA upstream 171786 49750066 ~ 49785055 (+) True LOC110531195
TU926362 lncRNA downstream 15695 49984426 ~ 49984958 (+) True G814336
TU926478 lncRNA downstream 169465 50138196 ~ 50204968 (+) True LOC110532304
TU926524 lncRNA downstream 225084 50193815 ~ 50198790 (+) True G814483
TU926537 lncRNA downstream 248613 50217344 ~ 50217613 (+) True G814493
TU926538 lncRNA downstream 250861 50219592 ~ 50219804 (+) True G814494
XR_005053276.1 mRNA upstream 38984 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA upstream 38984 49882156 ~ 49917857 (+) True LOC118966067
LOC110533019 mRNA upstream 153379 49800763 ~ 49803462 (+) True LOC110533019
XM_021616063.2 mRNA upstream 159810 49788722 ~ 49797031 (+) False gss
XM_036988234.1 mRNA upstream 159810 49788722 ~ 49797031 (+) False gss
XM_021616072.2 mRNA downstream 216734 50185465 ~ 50205006 (+) False LOC110532304
XM_036988238.1 mRNA downstream 256113 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA downstream 256113 50224844 ~ 50359363 (+) False LOC110532305
XM_021616079.2 mRNA downstream 433833 50402564 ~ 50408370 (+) True fam217b
XR_005053278.1 mRNA downstream 454715 50423446 ~ 50428094 (+) True LOC118966068
TU925067 other upstream 841223 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 950131 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 996850 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1386248 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 1974540 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 827483 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 827589 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 1109716 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1376641 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2354540 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile