RNA id: XM_021616066.2


Basic Information

Item Value
RNA id XM_021616066.2
length 4833
RNA type mRNA
GC content 0.45
exon number 7
gene id kcnd1
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50000110 ~ 50072237 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aggagaggagctaAGGCTAAGCATGACAATCACTCCCTCACTCTCCGGTGTGCGATGTGGTTCGATTCCAGGAGAGGGGCTGCTTATAATTCTCTCATTGCCTTTGCTTTCTCTTCCACATTGTCTGCAGCTTTAATGCATGGTATAAAAAGGGACGACCATACAAGGAATAGAAATGCCTAAGACTCAAACGTTTCCTTTCACAAGACCTCTGACACCAAAGAAATCGATTACACTTAAGGTTTGGTTGTGCAGAGAATccaagggacagagagaggcatCCATCATCAAAGCTGGAGAGCAACagtgagagggaaagggagaaagcAATGTGTCTATCTTGCAACGTCGGCGACCATCATCACAATTGAATACGAATTTGAAAAACCACAGCGCTGCAACTAATCTGTCTTCTGAGAAAGGGGAGGCAGTGAGCGAAGGTCGGAgacttattatttattttatttttaacactACTGAAAAGCCATATACAGTATTGTTCTACAATATTACTGTGCTATTATTTATACAAACCCTGTCAATAGTCTGATGTTTTATGAATCAGGCCTAGTTTTCCTGAGCTATTCCAATGGCCTGAACTTTAGGTTCAGTCCCCAACTGCCTTATCTTGACCCTTTTCTTTGATGATGTAAACACTATCATCTCCCTGCCTGCCTTACATTTCCCTCCTACTGAAGCCAATGCACAAACAAACTGACAGACTGGAAATGGAGGCAAGCCAACCCGGTTGTTGAGGCCTTCAGTTCGGATGATTAGATCGGATATACCTATACTTTTCCTCCTGATCCGGAAAAAGGCCCAGAAATAGCCCTCAAGTACCTAAACAACACTCCGTACCTTTACACACCATCCCGGCTTACTCCTGAAACAAAAGCTACTAAACAAAAATGGCTGCTGGAGTTGCAACATGGATGCCCTTTGCTCGGGCAGCAGCCGTAGGCTGGCTACCACTGGCCCAAAAGACCATGCCCAAGCCTCCTGTGGACAAAAAGAGTCGCAGTGATGAGATCTTGTTTGTAAATGTGAGTGGACTACGCTTTCAGACATGGAAGAACACCTTGGACCGTTACCCAGACACCCTTCTAGGCAGCTCAGAAAAGGAGTTTTTCTACAATGAGGAAACTCAGGAATATTTCTTTGACAGGGATCCAGAGATGTTCCGCCATATACTAAACTTTTTTCGAACAGGCAAGCTACATTACCCCCGACATGAATGCATTCAGGCTTTTGAGGAAGAGCTGGCTTTCTATGGCATAATACCGGAGATCATAGGTGACTGCTGTATGGAAGAGTACCGGGATCGCAAGAAGGAGAACCAGGAGCGTTTGGCTGAGGACACCGAGGCAGAGAATGCTGGAGACGCTCCCCTGCCCCCAGACGCCACATTACGAGAGAGGCTATGGAGGGCCTTTGAGAACCCTCACACAAGCACCATGGCCTTGGTTTTTTACTATGTCACTGGCTTCTTCATCGCTGTGTCTGTTATTGCCAACGTTGTGGAAACAGTTCCCTGCCGACCAATCAAAGGGAGTATAAAGGACCTGCCATGTGGTGAGAAGTTTTCAGTGGCCTTCTCTTGTTTGGACACGGCCTGTGTGCTTATCTTCTCCTTTGAGTACCTCATGAGACTGTATGCTGCCCCCAGCCGCTGTGATTTTGCGCGTTCGGTGATGAGCGTGATAGACGTGGTGGCCATCTTGCCCTTCTACATTGGCCTTGTCATGCCAGAGAATGAGGAAGTCAGTGGGGCCTTTGTCACCCTGCGAGTCTTCCGGGTGTTCCGTATCTTCAAGTTCTCCCGTCACTCTCAGGGGCTGCGTATCTTGGGCTGCACGCTGCAAGCCTGCGCCTCGGAGCTgggcttcctcctcttctccctcaccATGGCCGTCATCATCTTTGCCACCGTCATGTTCTACGCTGAGAAAGGCACCAAGGGAACCACGTTTTCCAGCATCCCTGCCTCCTTCTGGTACACCATCGTCACCATGACAACACTGGGATATGGAGACATGGTTCCAGACTCCATAGCGGGCAAGATATTTGGCTCCATCTGCTCCCTCAGTGGCGTGCTGGTGATTGCTCTACCTGTGCCTGTTATAGTCTCCAACTTCGCAAGGATCTACCACCAGAACCAAAGGGCAGATAAGATGAGGGCACAgcagAAAGTGCGCCAGGCAAGGATTCGAATGGCTAAAAAAGGGGCCACCAATGCATTCTTGCAGCACAAAGAGGATGGGGGATTGCAGGATGGTGATGGTGACAGCACACCTCTTTGTGTGAAGAACAGGTCCGCCTTTGAGCACCAACATCATCACCTATTGCACTGCTTGGAGAAAACCACAAATCACGAGTTCACCGATGAAGTCACCTACAGCGAGGTGTGTGTGACCGACTCATTGGGCTTCCGCACCAGCCGCAGCACTTCGCTGTCCAGCCAGCAGGGGGCCACCACAACCTGCTGCTCCCGCCGGGCCAAGAGGAGGGCCTTCCGCCTTGCCAACTCCACTGTCTCTGTCAGCCGGGGCAGTGTGCAGGAGCTGGACACGCTGCATGTCACCAAGACTCCTGCTGGTACCCAGTACCCACAGAGtcGCTCCAGTCTAAATGCCAGGACTGAAAACCTGAAGCTGAACTGTGATGACTACACGGCAGCCATCATCAGTATCCCCACTCCCCCAGCCAACACTCCTGATGAGAGTCTACCTAACTCCCCCGCCATCCCTGGCATCCTACGCAACTCTCGCTCCAGTACCTTCAACACCCAGGAAACTGTCAAGATCTCCTCTTTATAACCCCCTGAAGCACAGGACCTTGACCCATTGCACAAAAGAAGAGGAAGGGGGCCCATCAGAGAAGAACATGGGAAAGAAGGACATTCAAGGATGATACCACACACTCTTTGCAAATGCTTCACTCCAATACCAACGTAATGTCTACTGAATAGAGGTAGGGCTAGCGTGAATCTTtttcatttattcattcatttgaTTTGAACCATCCATGTGACGTGCTGGGGAAGTTACTGTTACTGGTTGATCTTTTGGTCCAGGGAGTTACGGGGGGGTGGGGGAGTTAGTAAATTGAGTGAGTATCACAGAGACTCACGGAGACTGTGAGCTGAGCAGGAACAGATGACAGCGTGTGAAACAGGAATCTACATGCCTCTTGGACTCAGAGAACGGACACATATGGATGGTGTGGTTGGTAAGAGTGTTTTTCAACAATAATATACCCACCGTGGCATCGAAGGCCTTTTTACTTTTCAAGATATGCAACGTTAGAACAAGCAGGAAAAAcgaatatacagtacataatgtGTGTCAAAAAATATTGCAGGGAGAGATTATACAGATGATGAATAATGACAAAATTATATTGATACATAAATACACCTTTAGAGAGAGAAATATTAGTTCTGCATTCTGCAATAGATTTCTTCACACAAACTCGGATGAAAATAAAGGAGTGATTGTTAGATGGTAGTGCATATGTAACATATTTTGTATCATACGTCTCTAAATCACATGCATCTTCAAACCTTACCAAAAAATGTCAGTGTAATGACGAGCTTACTACAGCTATGCATGTTCCTGTACAATAGATGGTGGAGAATAGAACTGCTGATATTAGTGGTGTCAGATATGACGAGCTCATAGGTTTTTTGCATGGTACCTTATTCTTTCCCGCAGAACAGTTAGTTGTATTTCTTTCTCCTGACAACATTGTGGAGTAATAATGATGTCACGTGCTGCACCAGAAGTGTACattaggttaaaaaaaaaaaaaagaatgaaataaaaatattgaGGCATGTTCCTCGCCAGAATGCGAAGTGGGTGCGTATGattgtgtggtctgtgtgtggtaGGTTGGGAGGACTTGTGTTTATTGATCACAAATATGCATGGATACCGTTGTAGGTATTTTACCTGTTTCTTTTGGGAAATAAAATGTAGAGGAGGGATTCAACAGCATCCATTGTCAATGAGAAAGAAATTCGTGAGAAGAGGTTACCAGTAAGAAAAGTTCACAGTTACCTTTCGTTGACTTCTCTTATTGTAATATTGTGTTACAGGGTTAAGTGTATGCAAGCCCGTTGATGGCTGTGTAATTGACAAACAACGTTTTTTGTTAAACATGCTAACATATCGGTGCTGCTACTGTACTTCATTGGACTTTACTGTTGTCATGGCTCCAGTTCTGTTTATGAGATCTGGTGTTTGCAATAACCGTTGTAATTATTTTACCGCAAACTTTGGCAAATCCTACTTTTTTTCTCGGATGATTATTATTTGCATAATATTGCAATGAAAGACTTCTCTGTAACTGTGCACTACAGCTGTTCTAAAGTTACTTTAGTATTTATTCATATAATGCAGATAGGAGTAGAATGAGCACTATGTCGACCTCACACATACTTGCTGACATTCATTTCCAAACATATATAGCGATATGATTCACATTATTTACACAATGTCGTTTTCTCATGGAAGTGACAACAGATGAGTAAAGTCGTGTCATATGCTTTATACGTGTATGCTGTATGAATACAACACACGTTTGATGGGAAGATTATATAGTAATTATAAGAAGCTTATACATACCACTCCTAATGAAGTGTTTACCTGACCCAATGATAAGTGACCGGATGTGTAGGCTCAGGAGAGGTGGCGCCAGCCGGTACTCAGTCAGCGATAGAGATGCACTGATTCCCTAGAGGACGACGAGCAGAACAGATCAAAAGCACAGTTGTCTATATTCTATTCCACAAATAAAGCAATTAGAATTCAGACAATTGTGTCGCCTTTT

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0051260 protein homooligomerization biological_process
GO:0008076 voltage-gated potassium channel complex cellular_component
GO:0005251 delayed rectifier potassium channel activity molecular_function

KEGG:

id description
K04891 KCND1, KV4.1; potassium voltage-gated channel Shal-related subfamily D member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926948 lncRNA downstream 15171 49983935 ~ 49984939 (-) True LOC110532301
TU926960 lncRNA downstream 73940 49925843 ~ 49926170 (-) True G814870
TU926953 lncRNA downstream 78724 49921144 ~ 49921386 (-) True G814863
TU926952 lncRNA downstream 80115 49919729 ~ 49919995 (-) True G814862
TU926931 lncRNA downstream 91200 49890851 ~ 49908910 (-) True G814842
TU927118 lncRNA upstream 83906 50156143 ~ 50193556 (-) True G815018
TU927143 lncRNA upstream 144886 50217123 ~ 50217772 (-) True G815043
TU927156 lncRNA upstream 170230 50242467 ~ 50252211 (-) True G815056
TU927242 lncRNA upstream 283032 50355269 ~ 50359362 (-) True G815142
TU927259 lncRNA upstream 303875 50376112 ~ 50376464 (-) True G815154
XR_002474818.2 mRNA downstream 14548 49982397 ~ 49985562 (-) False LOC110532301
XM_021616064.2 mRNA downstream 175317 49820974 ~ 49824793 (-) True LOC110532299
LOC110531196 mRNA downstream 181353 49806132 ~ 49818757 (-) True LOC110531196
XM_021616060.2 mRNA downstream 228223 49755020 ~ 49771887 (-) False LOC110532296
XM_021616067.2 mRNA upstream 65947 50138184 ~ 50180854 (-) False LOC110532303
XM_021616068.2 mRNA upstream 65947 50138184 ~ 50180854 (-) False LOC110532303
XM_021616069.2 mRNA upstream 65947 50138184 ~ 50180854 (-) False LOC110532303
XM_021616070.2 mRNA upstream 65947 50138184 ~ 50180854 (-) False LOC110532303
XM_021616071.2 mRNA upstream 65947 50138184 ~ 50180854 (-) True LOC110532303
TU926169 other downstream 263999 49735145 ~ 49736111 (-) True G814157
TU926019 other downstream 533348 49463957 ~ 49466762 (-) True G814020
TU925294 other downstream 1084406 48915435 ~ 48915704 (-) True G813357
TU924730 other downstream 1491016 48508645 ~ 48509094 (-) True G812840
TU924356 other downstream 1713680 48278174 ~ 48286430 (-) True LOC110532252
TU927144 other upstream 146119 50218356 ~ 50218697 (-) True G815044
TU927145 other upstream 146630 50218867 ~ 50219848 (-) True G815045
TU930130 other upstream 2081045 52153282 ~ 52153642 (-) True G817848
TU930410 other upstream 2591216 52663453 ~ 52668720 (-) True LOC110532367
TU930441 other upstream 2654930 52727167 ~ 52731623 (-) True G818117

Expression Profile