RNA id: XM_021616072.2


Basic Information

Item Value
RNA id XM_021616072.2
length 2110
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110532304
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50138196 ~ 50205006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGAGGTACACGCGGAACTTAAAGGCTAATCATCGCGGTAGAGACGGGAGCGGCAAGGCGCTCTGCGTTTGTCTCGAATTGTATTGATAGGCAAAAGCGGTCAACCACTGCCTGGCAATTAAAAAGTGAAATTGACATCCATAGTCGCGCAGATGGAGCACCTATCGAGGTTCGTAGGTCAGATGTCCTTGGCAGATGACAGCAGAGCGGAGGGCAACATCTCATCTGAGTATATTAATATTCGTGCTCAGACTTCTGTCATCAAGAAAGATTTTGGCCTTACCACGATAGCGGGGCAACTGATGGAGAATGTAAAGAAGAACCGTTACAGAGACATTTTACCATATGACCAGACCCGTGTGCCCCTGACTCTACTGACAAATGAGAATGATTTTGACTATATCAACGCCAGCTTCATTAAGGGTGCAACAAAGACCAAAAAATACATAGCGACCCAAGGGCCTCTGAGACACACTTTGGTGGACTTCTGGCGAATGATTTGGCAGTATGATGTAAAGgtcataATCATGGCTTGCAGAGAAATTGAAATGGGAAAAAAAAAGTGTGAGTGCTACTGGACTACTTTCAAAGAAACAACCCATTTTGGTCCCTTTATTGTGTCAAATTTTGAGGAATCCAGCCCAAATGAGGAAGTAGTTTTCCGCACTCTGACAGTGAGATATCATGAGGAAACACGGAAAATATCTCAATTCCAATACACAGCTTGGCCTGATCATGACGTTCCATACACCGTTTATGGTATTTTAGGAATGATGGATATGGTGCGCAAAGACCAAGGAAACAACACTAGCCCTGTTCTCATCCACTGCAGTGCTGGTTGTGGAAGAACAGGGGTGATTTGTGCCTTGGATTATGTTCACGATCTTCTTGTCACAAAGCAAATTAAAGAAGATTTCAGTATCATGAAGATTGTAGTGGAACTAAGGAGTCAGAGGCCATCAGCAGTTCAGACAAAGGAACAGTATCGGTTTGTGTTTTCTGCCGTGGCTTATATGTTTGAGAAGGCTTTACGGTCAGCTGAGAACAACTCCCAGAATCTCACCAAGAGTAACCAACCTTTATATGATGATGTTGCATCTGTGAAGACATCTCCACCGACAACATCAGCCATCGCTCAGACACTTGCAGAAAGATATTCTAATGTGCAGTACAGAGCGCCTCGGCCTCGTCAGCAAAAGATGAATGACGTATATGCCATGGTCAACAAGTCCAAACAGCTCCCGCCACCAGCCTCTTCCACCGCCCCTCTGGCAGGTCTCCATCACTATGACAACGAAGAGCTGGGCGTCCCAAAATGCCATGTAGGtgctctttacagcatggtcaagcCCAAGAGCAGGTGTCTTCCAGCCAAACCGCCACCAGCTGTCTCACCCATATATGACACAGCCGGACTAGCCAATCACAGGCTAGCTGAGGCCTCGGCAGGGGAGGACCAGAGTGGCTATGAGCTGGTCGCAGCTGATGGTTATTCCTCGGCCGAAGATGACTATGAGTATGTCTCAAATCCCATCAAACGAATGACCAACAGCTGCACTCCTGGTAGCATGGAGTTCAACTGTCGCATTAAAAAACCCAAAGGGCCTCGGGATCCACCGGCAGAGTGGAGTCGTGTGGAGAGATGACATAGCAGCCATATACCAGGCCTGGacacatctttatgtttgacaaGCAATGGGAATGggctctttatttatttttacttgctGTGAACATCTACTGTATGTGATCACAGAAATACAgttaactatctatctatcttttgTAACCCATTTGAGTCTGTATATATTTCAGTTCTTGTGATTTATATTACTGATGAACGAAAAAACTATATTAAACCACTTTCAATTCTGAGACAGGTATTGGTTTTGAATACCATTTACCGATTGAAGTGCAGTGCTGCTATAGTGTGATTGTAGTAACCAACAGGTGGCACTATAGTAACAGGAGATAATTAGTTTTTTCCATTATTGACGTTTCAGGTATTGTAAAATGTGTTTTCACAGGGAGACTCATGCTTTATTGCCCTTGATGTCTACTAATTGCTGGTAACAAGGACTTACAATAAAGACAACAATTTCTTCAAGGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926362 lncRNA upstream 200507 49984426 ~ 49984958 (+) True G814336
TU926333 lncRNA upstream 243719 49941469 ~ 49941746 (+) True G814313
TU926296 lncRNA upstream 306116 49879080 ~ 49879349 (+) True G814281
TU926240 lncRNA upstream 346175 49839038 ~ 49839290 (+) True G814225
TU925855 lncRNA upstream 373300 49811934 ~ 49812165 (+) True G813870
TU926537 lncRNA downstream 12338 50217344 ~ 50217613 (+) True G814493
TU926538 lncRNA downstream 14586 50219592 ~ 50219804 (+) True G814494
TU926480 lncRNA downstream 150263 50355269 ~ 50359369 (+) True LOC110532305
TU926636 lncRNA downstream 160792 50365798 ~ 50372376 (+) True G814590
TU926641 lncRNA downstream 168556 50373562 ~ 50373769 (+) True G814594
XM_021616065.2 mRNA upstream 216734 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA upstream 216734 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XR_005053276.1 mRNA upstream 267608 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA upstream 267608 49882156 ~ 49917857 (+) True LOC118966067
LOC110533019 mRNA upstream 382003 49800763 ~ 49803462 (+) True LOC110533019
XM_036988238.1 mRNA downstream 19838 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA downstream 19838 50224844 ~ 50359363 (+) False LOC110532305
XM_021616079.2 mRNA downstream 197558 50402564 ~ 50408370 (+) True fam217b
XR_005053278.1 mRNA downstream 218440 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 240546 50445552 ~ 50556296 (+) False si:dkey-178k16.1
TU925067 other upstream 1069847 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1178755 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1225474 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1614872 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2203164 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 591208 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 591314 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 873441 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1140366 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2118265 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile