RNA id: TU926478


Basic Information

Item Value
RNA id TU926478
length 1759
lncRNA type read_through
GC content 0.40
exon number 2
gene id LOC110532304
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50138196 ~ 50205006 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCATTTTTATTGACACTGCATGAATATCATTTAGCTGGAGAAACAGTTGACAAATGCATACATCTGAAGGAAAGGAATAGTCCACTGGGGAAGCAGTCGAGTGCTGGGTTGTATATTTGATCTTTTAATAAAACCCTGAATGATTATATCTGTTAGTAGTTATGAGGACTTTGCTGCAGCCGAGTTTGGCAATTCAAACATTTAGGTAAAAGGGGAGAGGATTATTTAAATAAAGCACACAATCTTTAATGTATTGGAAAAAGTGCAGAGTGTACTTATCTACAGTATCACCTATTATACCCAATATACTCATCTGAATCAAAGTCCATTTTGTCTCCAATGGGTGTCTGGGTGTTCAAAGAAAGTCCCGGAACACATCCGCCAAACATGCCTATGGTACATTACTGTATAAACTTAGCATTACACAGATtactgctaaaaaaaaaaagaatttacAAATGTTAAAGATAAAAgtaatgttaaaaacatcctcaAATAAGGGAAACTAGTGTGAAAGGCTAACACCAGTACACACATTCACGTCCACTTAAACAATCCCACATTTCATCTGCCAAGCTACTGTTGATTAGTCACGTTGAGAAATCACTTAcaataatacatttgctaaattaGTCAAAGGCAAACTAAGAGCCCAACTTCACATGATCCAAGCTACCCTCATCTGGACCGTCACTCCAGTACACTGGGCCAGTTCTTCTAATAAAAACGGTAAAGGCCGGGTAACAACGCCAGATAATTATTTGTGAGGAGTTTCCAGTCCATGTGAAACTCAGAGACCATTCTGATGAGCTTGTCCAGAGGGAATGGAAGAGTTTCACTCAGACTACCAACACTGCTGTTAGACCTTAGCCAGGGGGAGATTAGTTCTCAAACTAATTAATCCTCCCAAAGAGAATCCTCTGTTTCTTAGTGCATCTATAATCTCATATCTTAACAACATATCAAAGTGGAGTTAAACCGGAATTACATCCACAAATCTAACCAATTGGGGATAGAGAAAGCAGCCAAAGTGACATTTGAAAGCAGGGCACAAAGCAGGCATCTAGCCAGTTCCTGGACAGCCTATTCAAGTTGACAGCAGATGTTCAAGCAGCCAAGGCCTCATCCTCTGCTGCAGTCACAGCCCTGGTGCTGGGTGCAAACTAAAAGAGCACAGAGATCTAACCCAGTGAGTCGAGACACCGGTGGTTTGGTCCAGTCCGCAATGCTAGTCAGACGATAGGCTATGCAATCTATTGAGGTTTTTGTCTAATTACTGTACTACTGGCTTTAGCATACTTGCTATTTTCCCCAGACATATTCAACTGGACACCGCATCTATAATCTATGCCGGATGTAAATCTTTGACAATAATTTTGCTTCATATGCAATACTTCTAACTCCGAGACCGATAAATTACTACAGTTGATTTTTCATATTCATATATACAGGattcatacaaaaaaaaaaaaaaaaacaagagttGCAGAGTTTGAAGTTTAGCGAAATGAATACGAGTACAGGCAAAACACAACAGCTTAAGCCTCTCTGTATGAGTAAGCAGAATGTCTCTTGTTATTCACGACATTAAACAATCTCTTGAAGATGTGAACCAGTAATGCACTGTCCGAGAGATTTCCTGGCATCCTGGTTCCTGCCAGCGTTGCATTCTTCAGAgcaccccagtgtgtgtgtgtgggTGTGTTTTCACAGGGAGACTCATGCTTTATTGCCCTTGATGTCTACTAATTGCTGGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926362 lncRNA upstream 153238 49984426 ~ 49984958 (+) True G814336
TU926333 lncRNA upstream 196450 49941469 ~ 49941746 (+) True G814313
TU926296 lncRNA upstream 258847 49879080 ~ 49879349 (+) True G814281
TU926240 lncRNA upstream 298906 49839038 ~ 49839290 (+) True G814225
TU925855 lncRNA upstream 326031 49811934 ~ 49812165 (+) True G813870
TU926537 lncRNA downstream 12376 50217344 ~ 50217613 (+) True G814493
TU926538 lncRNA downstream 14624 50219592 ~ 50219804 (+) True G814494
TU926480 lncRNA downstream 150301 50355269 ~ 50359369 (+) True LOC110532305
TU926636 lncRNA downstream 160830 50365798 ~ 50372376 (+) True G814590
TU926641 lncRNA downstream 168594 50373562 ~ 50373769 (+) True G814594
XM_021616065.2 mRNA upstream 169465 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA upstream 169465 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XR_005053276.1 mRNA upstream 220339 49882156 ~ 49917857 (+) False LOC118966067
XR_005053277.1 mRNA upstream 220339 49882156 ~ 49917857 (+) True LOC118966067
LOC110533019 mRNA upstream 334734 49800763 ~ 49803462 (+) True LOC110533019
XM_036988238.1 mRNA downstream 19876 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA downstream 19876 50224844 ~ 50359363 (+) False LOC110532305
XM_021616079.2 mRNA downstream 197596 50402564 ~ 50408370 (+) True fam217b
XR_005053278.1 mRNA downstream 218478 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 240584 50445552 ~ 50556296 (+) False si:dkey-178k16.1
TU925067 other upstream 1022578 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1131486 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1178205 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1567603 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2155895 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 591246 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 591352 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 873479 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 1140404 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 2118303 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile