RNA id: XM_036988239.1


Basic Information

Item Value
RNA id XM_036988239.1
length 10111
RNA type mRNA
GC content 0.49
exon number 32
gene id LOC110532305
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50224844 ~ 50359369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GACCATTCCTAATGGTTAGAGACTGTCATGCGATTCAAGCAGTGAATTCCCTGCTGGTTTATTTCGAGGATTTTGCACAGAATTAATGAACAAATAATTATAGGCCTATGTGATAACCGCGGGAAAAAGAACTGTACGTGGTTGTGGATGTAACTGTTGCACTTTAAATACAGACATGAACCACTGAAGCTGAGACGGACAAGGACTGCAATAAGCTCACGTGACGAGCTCTATTCTCCCACCACCAAAAGATCTCAATCATGACACCCAAATGGCTGGTTATTTTCCTTTTTCTACAATCTGGGACCGAAAATGCATTCCCTATGGCCCCGACCAAGCTTCCCCCTGAGACAGGCACCTACAGGGTCACAGACACAAGCCTCACTCATCTCACAGTGCACAGCCGGACGGGAGAGGTCTATGTGGGAGCAGTGAACCGGGTCTATAAGCTGTCTGCCAACCTAACAGAGCTGCGTTCACACATGACTGGCCCTGTGGATGACAACGCCAAATGTTACCCCCCTCCCAGCGTCCGAGCTTGTGCACATAAACTGGAGTCCTCTGACAACGTCAACAAGTTGCTGCTGGTTGATTACGCTGGCAACCGCCTGGTAGCATGTGGAAGCATCTGGCAGGGTGTTTGTCAGTTCCTGCGGCTGGAGGACCTCTTCAAGCTGGGAGAGCCCCACCACCGCAAGGAGCATTACCTCTCTGGAGCCAGGGAGGCTGACGGCATGGCAGGAGTGGTGGTTGACAGAACAGAAGGGAAGTGGAAAAATGAGAAGAAGGGGGCTAGCCGGCTGTTTATCGGGGCAGCCATCGATGGCAAGTCAGAGTATTTCCCTACCCTGTCCAGCCGTAAACTGGTCGCTGATGAAGAGAGTGTTAACATGTTCAGTCTGGTCTACCAGGACGAGTTTGTGTCCTCACAAATCAAGATACCCTCCGACACTCTGTCCCTCTACCCGGCGTTTGACATTTACTACGTGTATGGATTCTCCAGCCGTACTTACATCTATTTCCTGACGTTGCAGTTGGACACACAGCTCACCCAGATGGATGCCACCGGTGAAAAGTTCTTCACCTCCAAGATAGTGCGGATGTGTTCCAATGACACCGAGTTCTACTCTTACGTGGAGTTCCCCCTGGGTTGCACCAAGGATGGGGTGGAGTACCGGCTGGTCCAGTCTGCCTACAAGCACCGTCCAGGTCGGATGCTGGCCCAGGCCTTGGGGCTGTCTGAGGACGAGGATGTGCTGTTTGTGGTGTTTTCCCAGGGCCAGAAGAACCGGGCCAACCCGCCTCGGGAAACGGTCCTGTGTCTCTTTACCCTGCATCAGATCAACCTGGCCATGAGGGAGAGGATCAAGTCGTGCTACCGTGGGGAAGGCAAGCTGTCCCTGCCCTGGCTGCTCAACAAGGAGCTACCCTGCATCAACACGCCAAAGCAGATTGGAGATGATTTCTGTGGGCTGGTGTTGAACCAGCCTTTGGGGGGTCTACGGGTGATAGAGGGGACCCCTCTGTATGACGACCGCGTAGATGGCATGGGAGCAGTAGCAGCCTACACCTATGGAGACCACTCAGTGGTGTTTGTGGGAACCCGCAGCGGACACCTCAAAAAGATCCGAGTGGATGGCATACCTCCCCCATCCCAGAGTGCTTTGCTGTATGAAACCGTTACAGTGGTTGAAGGGAAACCTATTCTGCGTGACATGGTATTCAGCCCTGACTACCAATACATTTACCTGCTGAGTGACAAACAGGTGAGCAGGTTACCTGTGGAGAGCTGTGGCCAGTACACCACCTGCAAGACCTGTCTGGGCTCTGGAGATCCCCACTGTGGATGGTGTGTTCTTCACAACAAGTGTTCCAGACAGGAGGCCTGTGAGAAGTGGGCCGAGCCGCAGCATTTTAACACAGAGCTGGACCAGTGTGTGGACATTAGTGTCACACCTAACAACATATCTGTGACCTCTACTTCCACCCAGctgAGTGTGAAAGTGGTAAACGTGCCCAGCCTGTCAGCCGGGGTGACGTGTGTGTTTGAGGAGTTGACAGAGAGCCCAGGGGAGGTGCTGGCCAAGGGGCAGATCCTCTGTATGTCCCCCTCCCTCAGAGATGTCCCCTCCCTCGCACAGGGATACGGTGACAAACGAGTGGTCAAGTTCTTCCTGAAGTCCAAGGAGACAGGGCACAAGTTCATCACCACTGACTTCATCTTCTACAACTGCAGCGTGCTCCAGTCgTGCACCTCCTGTGTGAGCAGCCCCTTCCCCTGCAACTGGTGTAAATACCGCCACATCTGCACCAACAACCTGGCAGAGTGCTCCTTCCAGGAGGGACGCGTCAGCAGCGTGGAGGGCTGTCCCCAGATCCTGCCCACCAGTGACATCCTGGTACCTGCAGGGATCATTCGTCCAATCACGCTGCGAGCCCGGAACCTCCCTCAGCCTCAATCTGGACAGAAGAACTATGAGTGTGTGTTCAACATCCAGGGCAAGATGCAACGCATCCCAGCTGTGCGCTTCAACAGCTCCTGTATCCAATGCCAGAACACCTCATACTGGTATGATGGGTACGAGACGGGAGACCTGCCTGTTGACTTCTCTATCGTCTGGGACGGAGACTTCTTCATCGACAAGCCTTCCACCATGAAAGCCCTGCTGTATAAGTGTGAGGCCCAGAGGGACAGCTGTGGCTTGTGTCTGAAGGCCAGCACAGCGTTTGAGTGTGGCTGGTGCCTGGACAACAAGAAGTGTCTCCTGAAGCAGCACTGCCAGACGCCGGAGCAGAACTGGATGCACCCCGGCAGGCACAACGTCCGCTGCAGCCACCCCCGCATCACCATGATCCGCCCGTTGACGGGGCCCAAAGAGGGGGGCACGCGAGTGACGATCGAGGGGGAGAACCTCGGGCTGCAGGTGCGGGAGATCGCCCACGTCCAGGTGGCTGGGGTTCGCTGTAACCCTGTGCCCTCAGAGTACATCAGTGCTGAGAGGATCGTGTGTGACATGGCCGAGGCGCTACTGCCCCACTCTCCAGGTGGCCCAGTGGAGCTGTGTATCGGGGTGTGCAGTGCAGAGTACCGCACTCAGTCATCCCAGACCTACTCCTTTGTGaCCCCCAGCTTCAACCGTGTGCGCCCGGAGAAGGGCCCCGTGTCTGGGGGGACCAGGCTGACAATATCAGGCCGTCATCTGGATGCTGGGAGCACTGTCACTGTATTCATCGCCCAGGAGGAGTGTCTGTTTGTTAAGAGGACCAAAAGGGACATTGTGTGTGTGACACCGTCGTCACTGTCTGGATCAGGCCCCGCGTCAATCAAGCTGTTAATTGACAAAGCTGAAGTCACCAGCAGTGACACACGCTACATCTATACAGAGGACCCCACCATCTCCAGCATCGAGCCCAGCTGGAGTATAGTGAATGGTAGCACCTTGATCACCGTCACAGGTACCAACCTGCTCACCATCCAGGAACCCAAAGTCCGTGCCAAGTATGGAGGAATAGAGACTACTAATgTGTGCACTGTGGTTAATGATTCTGTGATGACCTGTCTGGCCCCGGGCATCATTTACACCAAGCACCAGGCACCAGAGTCAGGCCTGCACCCCGACGAGTACGGCTTCATCCTGGATCACGTGGCCGCGCTGCTCGTCCTCAATGGGACACCTTTCACCTACTACCCCAACCCCACCTTCGAAACACTAGGGAACTCTGGGATACTGGAGGTCAAGCCTGGCTCTCCCATTATACTCAAAGGAAAGAATCTGATTCCCCCTGCTCCGGGCAACACCCGCCTGAACTATAGTGTGATGATTGGTGAAACTCCCTGTCTGTTAACCGTCTCGGAGTCTCAGCTGCTCTGTGATTCGCCAGACCTGACCGGGGAGCAGAGAGTCCTGATTGTGGTGGGTGGTCTGGAGTACTTCCCAGGCACCCTGCACATCTACTCCGACAGCACCCTCACCCTGCCGGCCATCATCGGGATCGGGGCGGGAGGAGGGGTGCTCCTCATCGCCATCATCGCCGTACTTATCGCCTACAAGAGGAAGACCCGGGACGCTGACCGCACCCTGAAACGCCTGCAGCTGCAGATGGACAACCTGGAGTCCAGAGTGGCCCTGGAGTGTAAAGAAGCATTCGCTGAGCTGCAGACAGACATCCAGGAGCTGACCAATGACATGGACGGAGTGAAGATCCCCTTCCTGGAGTATCGCACCTACACCATGAGAGTCATGTTCCCCGGTATCGAGGAGCACCCCGTCCTCAAGGAGCTGGATTCCCCGGCCAATGTGGAGAAAGCCCTGCGTCTGTTCAGCCAGCTGCTGCACAATAAGATGTTTCTGCTAACCTTCATCCACACCCTGGAAGCCCAGAGGTCCTTCTCCATGCGGGATCGCGGCAACGTGGCCTCTCTGCTCATGGCCGCGCTGCAGGGCCGCATGGAGTATGCCACCATGGTGCTCAAACAGCTGCTGGCAGACCTCATCGAGAAGAACCTTGAGAACCGCAACCATCCCAAACTGCTGCTCCGACGGACAGAGTCTGTGGCAGAGAAGATGCTCACCAACTGGTTTACGTTTCTGCTGCATCGATTCCTCAAGgaGTGTGCGGGCGAACCTCTGTTCATGCTGTACTGTGCCATCAAGCAGCAGATGGAGAAGGGGCCTATAGACTCCATCACAGGAGAGGCGCGCTACTCCCTCAGTGAGGACAAGCTCATCAGACAGCAGATTGACTACAAACAGCTGacTCTGATGTGTATCCCTCCGGAGGGAGAGGCAGGCACGGAGGTCCCGGTGAAGGTGCTGAACTGTGACACGGTCACTCAGGTGAAGGACAAGCTGCTGGACGCTGTATACAAGGGCATCCCCTACTCCCAGAGACCCCAGGCTGACGACATGGACCTGGAGTGGCGACAAGGTAGACTGACCAGAATTATCCTTCAAGATGAGGACGTCACCACAAAGATTGAGAGTGACTGGAAAAGGCTCAACACCTTGGCCCACTATCAGgtgACCGATGGTTCTCTGGTAGCCTTGGTCCAGAAGCAAGTCTCAGCCTACAATATTGCTAACTCGTTTACCTTCACCCGCTCTCTGAGCCGCTATGAAAGCCTCCTGAGGACGTCCAGCAGCCCAGATAGCCTGCGCTCCCGTGCCCCCATGATCACCCCTGACCAGGAGACTGGCACCAAGCTCTGGCACCTGGTCAAGAACCACGAGCACGCTGACCAACGGGAGGGCGACCGCGGCAGCAAGATGGTGTCTGAGATCTATCTCACCCGCCTACTGGCAACCAAGGGAACTCTGCAGAAGTTTGTAGATGATTTGTTTGAGACGGTGTTCAGCACGGCCCACCGCGGCAGTGCCCTCCCTCTGGCCATCAAGTATATGTTTGACTTCCTGGACGAGCAGGCCGACAGGAGGCAGATCACTGACCCGGACGTCCGCCACACCTGGAAGAGCAACTGTCTGCCCCTGCGTTTCTGGGTGAATGTGATCAAGAACCCTCAGTTTGTGTTTGACATCCACAAGAGCAGCATTACGgacgcctgtctgtctgtggtggccCAGACCTTCATGGACTCCTGCTCTACATCAGAGCACCGCCTGGGCAAGGACTCCCCCTCCAACAAGCTGCTGTACGCTAAAGACATCCCCAACTACAAGAGCTGGGTGGAGAGGTACTACAGAGATATCAGTAAGATGCCTACCATCAGTGACCAGGACATGGATGCCTATCTGGTGGAGCAGTCTCGTCTCCATGGCACCGAGTTCAACACTCTCAGTGCTCTCAGTGAGCTCTACTTCTACATTAACAAGTACAAAGAGGAGATTTTGACAGCACTGGACAGGGATGGGTACTGCCGCAAACACAAGTTGCGACACAAACTGGAACAAGCCATTAACCTTATGTCGGGCAGCAGCTGAGGGCGGAGGATGGAACAGGGGGTCAGGGGtcgggaggaagggggggggggggggggggggggtagttgaaCTGGGGAACGGACCTGTGTTGGAACATACGCAGCTTGTGCTAGTAAAAATGAAGACATAAGACACTGGACAATCAACACAACGAACCACAGCACAGCACATTAAGCCCAATGTCTACTGACCAGATTCTGTGCCCAATATCCTCACTCCCTCAAACCTCTACCTGCCATTGCCAGTGAAACATTCTGAGTCATTTTTTTCTCCACACTGGCCTTTTCAATGACAGACTCTTTAGTAACTGCCTAATCTAATGGAAGAGGACTACTGTGGATAATATGAGATACATTCCAATAGAGGCATACAGTAAGTTGCTTTGGGAACTGTTCTGAATTGCCAAGCTAGTGCCATGGGATGAGTAGCTTTTGGTCTGGGATAATATTTGTACAAAGTGCTGAAAAGTAACATTTAGGTGTGGACTGGATTTTATCTAGAAACGTATGGGCTTTACTACAAGTATTGTAAGATACCATAACCTATTGGCCCCAAAGGAAAGCTTTGAGGCTCTGTTTTGATGTGTTAGGGTGGGAGATTCAATGCCAGTGTGTGATGAAGGAGGCAGTGTATGGACAAAAGAGACCAAATTCTGGAAGCACCAGAGGCCTAATTAAGTGACAAATTGAGGGGAGTGTTGGGGCTGGGCTGAGGCTGGGCCATCCCCCCGTCTCTCAAATGCCATAGCGACAAAGCgcctttttccttttttttttttttttttttgttcttaaAATTTGGGGCCAAATGGACCTTTGCTGATGGTGAGGCTCAGCTCAGAGTCCAGAGTTTTAAAGCTTGCCTTTGTGTTGCAGGAAGTGAAGCCCTCTCCTCGTAGACGTTCCACCCCTATTGTAACTGTCCAGCTAATTATACTTAGATCCCTGTGTCAGTCTGCACCACTGTGAATCTGATCTGTCAGGATCTGAGGAATTCCCATCCAGAGCCCAGGGCCACTGCTGTCGTGGAAACAACTATTTTTACCCATATCAAGCATCCTAAATCTAATCGATCCGTCACGAGCAATAAGTCTAGTTCTAAAACAGCAAGCCATGTTTCATTAGATTACATTAAACCAATAGTTATGTTAGAGTATCTCTATGTTGCGATAATCATTCTGTGTAGTAATCTTTCTGTTCCAGATTTTTTCCGTATTGCAAATGACAGCTTGATCAAAATGTGTAACGCAACACCAAGGACACCAGTAttcattgtttttttaaattctaGAAACAGAATGCGGTCTAAATACAACCTGTGTGGTTGTGAGTTCACTTATGTAGGTCATTCGCAGTAGTAAATGGAGAAAATGCCTCTATGCTGCCCGTGTTTCCATTACCATGCTAGAGGTTACTGTGTTGAATTCTGATTCCCAACCCAGGAGACCTTAATCCTTCATTCTGTTTACCCCACGGTcccagagagccagcagcagtaGGCTGTTTCGTAGGTTCTGATCAGCTGGTAAATGCCATTGCTCTGTGTTGACTCCCTCCATGACAGACAGTAGaagctctgtgtgtttcagtggtgGTACAGCGGCTTACTGTACACACTCCTATGCTCCCTCTCCATACTTCTCTACTAGGAGGGAATGCAGTCTGGTGGTCTTATACCTCAATATTATTTGAGTGCATTTACATGTGGTTCTGAGTTCGGCCCTATCCAATGATGAAGTATttattgttttgtctttatttatttcatatttatttacattttacacAAGAATGTGAACTCTTGTTTTGTACAGTTTTAGTGACTGTACACCTGAACACAGTTGGTGtgctctgtactgtactataggCCGAGTCTGCAACACTGCTGCGGGAGTCTTTTTGATGCCAATTCCCACACAGGGCCGGGTTCATTTAGGATACATCATAGATTCAGTAAATAACAGAGTTCCTTCACATCCATAACTGAAAAGTAAATCTTTGGTCGCCACATCAACTGTTTGGTGACAACAGTGAGGAATGCAGACTGACCAAAGGAggcacagagaacagagaacagatgaTCACGCTCTTGTCTTTGGGTTGACCCACATATTACAATATATGTTAACCATAGATTACACCACGTTTAAAAATTCAGCTACAAACATACCTTTAAAAGATTTTTAGTTTAATAGGATAAAGCCTCAAATTCCAATGTTCCCCATAACTAATGTTTGACAAATATGTATTTGTACTACTAAAGCCAGAGGTTTGTGGTAATCCTGGTCCTGAATATAAATATTTCAGTATAACTAACAGTTATTTTATCCATTAATTCCTCGAAGATGAAATACAATTTATTGTTAATAAATTAAACCAATACTTTGGTCTATCAGTGTACAGGTGTTAGTCCTCTAGACGCTGGCTGTGTGTTGTTTTTCATAGGGACCTTTAACACGGTTATGCTCTGTTTAGATCTGACCGAAATGGATCTGAAACAAACTCATTACTGTAGACTAATTAGGCTTGCTTATCAGCCCAGGAACAAAAGAGCCATTATTATATATTTTCATAACCCTGCACACATTTCATTAAATCCACaccaagtgagagagagagagagagagagacccatttTTCTACATGGAAGATGCACATTGTAGATAACCACCAAATCAATTTAGAATTTGGTCTTGGAACTCTGagagaaatacattttcaaataaaaCTGGAGCTCATTAGCATGTTAAGAGCTGCAGGAGGATAATTAAGGAGAATGGGTTTCAACATCCTGGTGTTATTTTGGGGCAGAGAAATTGGGTCAGTGTATCTGGATCTAGCTCTGGGGGGGATATCACCTTCCACCATATGTGAAAATGACTCAGTCAGAAATGACGGCCTGGTTGCCAGAGCTGCTCTGTCAGCATTGCAGGTGTATTACAGATATCAAAGCTCTGCTTGAGCCACTTTACAAAATTAAAGTTTATCATAAATCTGGAAGAGAACGTCTTGAATTTTGACTTAGTACCTCTGGTTAACGCCATCTCATAGGGTTTGAATCTGGTTGCAATCTACCCACATAAGTAAACAATTCAAATAGTAACTGCAATAAGGTATCCATTTTTGGGGGTGAAATCATCCAAAGTAGTTTGGCTGCCTGCCatatgtaaccggtgtgaaatggctagctagttagcggcgtgcgctagtagcgtttcaatcggtgacgtcactcgctctgagaccttgacgTGGCtcttgtggagcgataggtaacaaTATTTCTTGGGAGGCAGTTGCcaatgtgttcagagggtccctggttcgagcccagattGAGGCAAAGAGAGGGACTGAATCCACACTGTTACACATACATCATATGTAAACTAGTGAAGGGCCAGGTGATTGGGCTGTAGAACTCAGAGCCGCGGCCGTACGTCTGGTTTTGCGATGTTGTTTAAACAGCAACATAAAAAAAAGCACCTGTAACATGTAAGGAAGAAAGGAGGGAGTGCAAACTTGTGATGTTTCTAAGTAGATACTGTAGAAGCTATGTCCGTTTTAGATCCATAATTACatttcagtcagtgttctagtaAAAAAGTTAAACTTTtgtctcaaataaataaattataattTATTTGTTGATTTTGTCTGTTTATCCCAAATGTTTTAATCGATTTAACGTAACAAATTTCTTTACTGCTTCAAAGATATATGGAATTTATTAACTTTGTCTGGAGAGAAGGTAGCTTTGTGACTGACTGACGAATGGATGATTGCTCTGCCTAGTCCTTAattctatataaatatataaatatattttgtataattatttgtttaaaatgtttccttttaaattattgttatttctttttatattttattttgttagtttgaaGGAGTTGTAGTAATGAGTCCTTTAAACGCTGGCTGCAATGAAGTGTTTTGTATATATTTGCACTTTTTTTTACTCAGTCAGAGGTTTTTAAAAGATTGGATTCTAACTTAATGTTGAAATGACAAGCATGGTGTTTTGTTTTGCTAATTAAAATATGTGGATGATGCTGTATGTTCTTGAATGTTTTATTCGTGTATGATCCTCAATGATTATTTTCTCTGAACAATGTTTGAATTCAAATAAAGGCAAGTGTTTTAGTAAAAATTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926538 lncRNA upstream 5040 50219592 ~ 50219804 (+) True G814494
TU926537 lncRNA upstream 7231 50217344 ~ 50217613 (+) True G814493
TU926478 lncRNA upstream 19876 50138196 ~ 50204968 (+) True LOC110532304
TU926524 lncRNA upstream 26054 50193815 ~ 50198790 (+) True G814483
TU926362 lncRNA upstream 239886 49984426 ~ 49984958 (+) True G814336
TU926636 lncRNA downstream 6435 50365798 ~ 50372376 (+) True G814590
TU926641 lncRNA downstream 14199 50373562 ~ 50373769 (+) True G814594
TU926649 lncRNA downstream 20661 50380024 ~ 50380236 (+) True G814602
TU926670 lncRNA downstream 63280 50422643 ~ 50422974 (+) True G814621
TU926673 lncRNA downstream 72527 50431890 ~ 50432090 (+) True G814624
XM_021616072.2 mRNA upstream 19838 50185465 ~ 50205006 (+) False LOC110532304
XM_021616065.2 mRNA upstream 256113 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA upstream 256113 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XR_005053276.1 mRNA upstream 306987 49882156 ~ 49917857 (+) False LOC118966067
XM_021616079.2 mRNA downstream 43201 50402564 ~ 50408370 (+) True fam217b
XR_005053278.1 mRNA downstream 64083 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 86189 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XM_036988244.1 mRNA downstream 86189 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA downstream 86189 50445552 ~ 50557497 (+) False si:dkey-178k16.1
TU925067 other upstream 1109226 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1218134 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1264853 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1654251 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2242543 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 436851 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 436957 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 719084 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 986009 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1963908 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile