RNA id: TU926480


Basic Information

Item Value
RNA id TU926480
length 4101
lncRNA type sense_over
GC content 0.39
exon number 1
gene id LOC110532305
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50224844 ~ 50359369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGACCTGTGTTGGAACATACGCAGCTTGTGCTAGTAAAAATGAAGACATAAGACACTGGACAATCAACACAACGAACCACAGCACAGCACATTAAGCCCAATGTCTACTGACCAGATTCTGTGCCCAATATCCTCACTCCCTCAAACCTCTACCTGCCATTGCCAGTGAAACATTCTGAGTCATTTTTTTCTCCACACTGGCCTTTTCAATGACAGACTCTTTAGTAACTGCCTAATCTAATGGAAGAGGACTACTGTGGATAATATGAGATACATTCCAATAGAGGCATACAGTAAGTTGCTTTGGGAACTGTTCTGAATTGCCAAGCTAGTGCCATGGGATGAGTAGCTTTTGGTCTGGGATAATATTTGTACAAAGTGCTGAAAAGTAACATTTAGGTGTGGACTGGATTTTATCTAGAAACGTATGGGCTTTACTACAAGTATTGTAAGATACCATAACCTATTGGCCCCAAAGGAAAGCTTTGAGGCTCTGTTTTGATGTGTTAGGGTGGGAGATTCAATGCCAGTGTGTGATGAAGGAGGCAGTGTATGGACAAAAGAGACCAAATTCTGGAAGCACCAGAGGCCTAATTAAGTGACAAATTGAGGGGAGTGTTGGGGCTGGGCTGAGGCTGGGCCATCCCCCCGTCTCTCAAATGCCATAGCGACAAAGCgcctttttccttttttttttttttttttttgttcttaaAATTTGGGGCCAAATGGACCTTTGCTGATGGTGAGGCTCAGCTCAGAGTCCAGAGTTTTAAAGCTTGCCTTTGTGTTGCAGGAAGTGAAGCCCTCTCCTCGTAGACGTTCCACCCCTATTGTAACTGTCCAGCTAATTATACTTAGATCCCTGTGTCAGTCTGCACCACTGTGAATCTGATCTGTCAGGATCTGAGGAATTCCCATCCAGAGCCCAGGGCCACTGCTGTCGTGGAAACAACTATTTTTACCCATATCAAGCATCCTAAATCTAATCGATCCGTCACGAGCAATAAGTCTAGTTCTAAAACAGCAAGCCATGTTTCATTAGATTACATTAAACCAATAGTTATGTTAGAGTATCTCTATGTTGCGATAATCATTCTGTGTAGTAATCTTTCTGTTCCAGATTTTTTCCGTATTGCAAATGACAGCTTGATCAAAATGTGTAACGCAACACCAAGGACACCAGTAttcattgtttttttaaattctaGAAACAGAATGCGGTCTAAATACAACCTGTGTGGTTGTGAGTTCACTTATGTAGGTCATTCGCAGTAGTAAATGGAGAAAATGCCTCTATGCTGCCCGTGTTTCCATTACCATGCTAGAGGTTACTGTGTTGAATTCTGATTCCCAACCCAGGAGACCTTAATCCTTCATTCTGTTTACCCCACGGTcccagagagccagcagcagtaGGCTGTTTCGTAGGTTCTGATCAGCTGGTAAATGCCATTGCTCTGTGTTGACTCCCTCCATGACAGACAGTAGaagctctgtgtgtttcagtggtgGTACAGCGGCTTACTGTACACACTCCTATGCTCCCTCTCCATACTTCTCTACTAGGAGGGAATGCAGTCTGGTGGTCTTATACCTCAATATTATTTGAGTGCATTTACATGTGGTTCTGAGTTCGGCCCTATCCAATGATGAAGTATttattgttttgtctttatttatttcatatttatttacattttacacAAGAATGTGAACTCTTGTTTTGTACAGTTTTAGTGACTGTACACCTGAACACAGTTGGTGtgctctgtactgtactataggCCGAGTCTGCAACACTGCTGCGGGAGTCTTTTTGATGCCAATTCCCACACAGGGCCGGGTTCATTTAGGATACATCATAGATTCAGTAAATAACAGAGTTCCTTCACATCCATAACTGAAAAGTAAATCTTTGGTCGCCACATCAACTGTTTGGTGACAACAGTGAGGAATGCAGACTGACCAAAGGAggcacagagaacagagaacagatgaTCACGCTCTTGTCTTTGGGTTGACCCACATATTACAATATATGTTAACCATAGATTACACCACGTTTAAAAATTCAGCTACAAACATACCTTTAAAAGATTTTTAGTTTAATAGGATAAAGCCTCAAATTCCAATGTTCCCCATAACTAATGTTTGACAAATATGTATTTGTACTACTAAAGCCAGAGGTTTGTGGTAATCCTGGTCCTGAATATAAATATTTCAGTATAACTAACAGTTATTTTATCCATTAATTCCTCGAAGATGAAATACAATTTATTGTTAATAAATTAAACCAATACTTTGGTCTATCAGTGTACAGGTGTTAGTCCTCTAGACGCTGGCTGTGTGTTGTTTTTCATAGGGACCTTTAACACGGTTATGCTCTGTTTAGATCTGACCGAAATGGATCTGAAACAAACTCATTACTGTAGACTAATTAGGCTTGCTTATCAGCCCAGGAACAAAAGAGCCATTATTATATATTTTCATAACCCTGCACACATTTCATTAAATCCACaccaagtgagagagagagagagagagagacccatttTTCTACATGGAAGATGCACATTGTAGATAACCACCAAATCAATTTAGAATTTGGTCTTGGAACTCTGagagaaatacattttcaaataaaaCTGGAGCTCATTAGCATGTTAAGAGCTGCAGGAGGATAATTAAGGAGAATGGGTTTCAACATCCTGGTGTTATTTTGGGGCAGAGAAATTGGGTCAGTGTATCTGGATCTAGCTCTGGGGGGGATATCACCTTCCACCATATGTGAAAATGACTCAGTCAGAAATGACGGCCTGGTTGCCAGAGCTGCTCTGTCAGCATTGCAGGTGTATTACAGATATCAAAGCTCTGCTTGAGCCACTTTACAAAATTAAAGTTTATCATAAATCTGGAAGAGAACGTCTTGAATTTTGACTTAGTACCTCTGGTTAACGCCATCTCATAGGGTTTGAATCTGGTTGCAATCTACCCACATAAGTAAACAATTCAAATAGTAACTGCAATAAGGTATCCATTTTTGGGGGTGAAATCATCCAAAGTAGTTTGGCTGCCTGCCatatgtaaccggtgtgaaatggctagctagttagcggcgtgcgctagtagcgtttcaatcggtgacgtcactcgctctgagaccttgacgTGGCtcttgtggagcgataggtaacaaTATTTCTTGGGAGGCAGTTGCcaatgtgttcagagggtccctggttcgagcccagattGAGGCAAAGAGAGGGACTGAATCCACACTGTTACACATACATCATATGTAAACTAGTGAAGGGCCAGGTGATTGGGCTGTAGAACTCAGAGCCGCGGCCGTACGTCTGGTTTTGCGATGTTGTTTAAACAGCAACATAAAAAAAAGCACCTGTAACATGTAAGGAAGAAAGGAGGGAGTGCAAACTTGTGATGTTTCTAAGTAGATACTGTAGAAGCTATGTCCGTTTTAGATCCATAATTACatttcagtcagtgttctagtaAAAAAGTTAAACTTTtgtctcaaataaataaattataattTATTTGTTGATTTTGTCTGTTTATCCCAAATGTTTTAATCGATTTAACGTAACAAATTTCTTTACTGCTTCAAAGATATATGGAATTTATTAACTTTGTCTGGAGAGAAGGTAGCTTTGTGACTGACTGACGAATGGATGATTGCTCTGCCTAGTCCTTAattctatataaatatataaatatattttgtataattatttgtttaaaatgtttccttttaaattattgttatttctttttatattttattttgttagtttgaaGGAGTTGTAGTAATGAGTCCTTTAAACGCTGGCTGCAATGAAGTGTTTTGTATATATTTGCACTTTTTTTTACTCAGTCAGAGGTTTTTAAAAGATTGGATTCTAACTTAATGTTGAAATGACAAGCATGGTGTTTTGTTTTGCTAATTAAAATATGTGGATGATGCTGTATGTTCTTGAATGTTTTATTCGTGTATGATCCTCAATGATTATTTTCTCTGAACAATGTTTGAATTCAAATAAAGGCAAGTGTTTTAGTAAAAATTCCACAAAGA

Function

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process
GO:0060272 embryonic skeletal joint morphogenesis biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0048675 axon extension biological_process
GO:0048696 regulation of collateral sprouting in absence of injury biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926538 lncRNA upstream 135465 50219592 ~ 50219804 (+) True G814494
TU926537 lncRNA upstream 137656 50217344 ~ 50217613 (+) True G814493
TU926478 lncRNA upstream 150301 50138196 ~ 50204968 (+) True LOC110532304
TU926524 lncRNA upstream 156479 50193815 ~ 50198790 (+) True G814483
TU926362 lncRNA upstream 370311 49984426 ~ 49984958 (+) True G814336
TU926636 lncRNA downstream 6429 50365798 ~ 50372376 (+) True G814590
TU926641 lncRNA downstream 14193 50373562 ~ 50373769 (+) True G814594
TU926649 lncRNA downstream 20655 50380024 ~ 50380236 (+) True G814602
TU926670 lncRNA downstream 63274 50422643 ~ 50422974 (+) True G814621
TU926673 lncRNA downstream 72521 50431890 ~ 50432090 (+) True G814624
XM_021616072.2 mRNA upstream 150263 50185465 ~ 50205006 (+) False LOC110532304
XM_021616065.2 mRNA upstream 386538 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA upstream 386538 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XR_005053276.1 mRNA upstream 437412 49882156 ~ 49917857 (+) False LOC118966067
XM_021616079.2 mRNA downstream 43195 50402564 ~ 50408370 (+) True fam217b
XR_005053278.1 mRNA downstream 64077 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 86183 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XM_036988244.1 mRNA downstream 86183 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA downstream 86183 50445552 ~ 50557497 (+) False si:dkey-178k16.1
TU925067 other upstream 1239651 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1348559 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1395278 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1784676 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2372968 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 436845 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 436951 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 719078 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 986003 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1963902 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile