RNA id: XM_021616079.2


Basic Information

Item Value
RNA id XM_021616079.2
length 2184
RNA type mRNA
GC content 0.54
exon number 4
gene id fam217b
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50402564 ~ 50408370 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGGCTACGGAACTGTGCCAGACAGGGACCGCAGCAAGTAAACAAGCCTATTCGACACAGTGATAGCGGAAACGAATTTAGGATACAGTTGTTTTATTGATCGGGGGCTCACGTTAGCTGCCGTACACGACACGGCAGTAAACCCTTGAGAAAACTGGAATATTATTACAGTATTTGTTTTCGCACGGGAATAGACTCCTGATATGCGCATTATGCACTGCATCACTTTCGATAATATGGACGATTTTACCCTCAACATGGAGTACCTCATATGGGATTTAGGTTGGCATCTATAGCTACAGTAGGACGTTATTCCGTTGCATTGGACTGAAAGCAGCTGTCCTTGAGCTCCAGGATCATGGGCCCCATTATGCAGGAACGCACTGCCTCCACGGCATTGAAACGCGTTGTTTCCAAAGAGAAGATACGTACGAAGAATTCTGAAAACAACGAACCGATTACGAgTTCAAAGAAAGCTAACAAGGTGAAGAAGGCAGGAGCTCAACTCAAGAATGCCCTTCCAGGTCAGGATAAGGACACTGTGTCGACAATCCAGAGGGGCATTCATTCAAAGGGAAGCAGAGTCAAATCTGGCACTACTCGAAACACTAGCAAACTGGCAAGCCCTCAAGAAGGAGGCTTGAAgtctaaaccacacacacactccacacagagGCAAGAGAAGCGAGAGGTTCAGCGAACGTCCCCATGTTGCGGTGAGTTAGATCAGAACCATGGGGTACTGGGCCGAAGTCGGaaagctctctctctgcccctctcccctATACCTGGGCTGCGCCAGGGGCCAATGcggcttcacacacacactcaagtccCCACCCTGGAGTCCCTCAGACAGTTTGAGCAGAAGGAAGTCGACTCGGACAGCGCCAGTGACCTGTCAGACTCAGAGAGACTGCCTGTactcccctccccctgtacccCCTGCACCCCACCCCATCTCAACCTCCGCGCTGAAGTGATCAACTCCAGCGACTTCCCCCCAGCCTTCCCAGGACCACACGGGGCCACGAGCGACAACGACAGCGTCAGCTACAACTACCCTGacttcctgcctcctcccttcAATACCTGGAGCCTACGCCAGCTGGCTGTGTTCCTCCACACGGAGGGCCGAGGCGCACCTCGCCCCAAACCTGTGGGGCCCCTGGAGAAGTACCTGGAGAGGCTGCTGCAGTTGGAGTGGCTCCAGATCCAGACTGTGCAGGCGGAGGCCTGCCGACCTGCGGGGGGCCGTCCTAGGGCCCTGGGCTTCCCCTCTGCCACCACCACGAACACACCTCGGCCCCACACGGCGCCACCCAGCCGCCTCAGCTCCCCCAAAGGCCTGCGGCAGTGTCAGCGTGCCTTCCCGCTTGCCCCTCACAACCCCCCCTCGCTGGCAGCACAGCAGCTCTCCTGCCTCCCAGTCTGCCCCCATTGTCACATCCGCTACCCTCTGTGCAACGGGAGCTGCTCCTCCTATGCCTACCAGCGCCACTCGCGCCTCAGTCCCCTGCTGGAGCGCCGAGCCAGGCCCGGGGTTCCCCCGAAGAGGAGCAGCAGTGAGAGCCGGGTCACTTCCTCTGAGGGTAGGGCTACAGGcagcagtggaggaggacagACTCCAGGTAGCCCCTCGGCAGGAAGAAGCCACGTCAGACACATGCAGGCGGTTGGCAACATCCGTAAACCCGCCCAGGAGCCAGGCACTAACGGTAAAGGTCAGGCCAGTGTGAAGAAAGGCCGCGCCAGAGCCAATTCGGAAGCCGAGGTGAGGAAGGAGTCTAGTACGGCTAAGGCGGGtgtggagaaacacacacactctggaagTAAACGAGAGGCTAACACGATCAAGAGGGTCGAGAAAGACTGTCAGAGGACAGAAACAGGAAGTCAGGCATCTAAAAGTGGGGTTAAAAGAACAGTAAAAgagccactctctctcttcaagGCACCGTTGTCTGCCAAAGCGAATGGAAAAGCAAAGAATGTTCACTTTATTGCCAAGTAACCACATTTCCTGGCTCAGTACAGGAACTTAAAGTTATGCTTGATAAagttatatataatatacagtgccttcagaaagtattcataaccttTTACTTTTTgtcgtgttacagcctgaattcaaaatggatgaaatatattttttctctcaccGATCTACATaaaatgccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926649 lncRNA upstream 22328 50380024 ~ 50380236 (+) True G814602
TU926641 lncRNA upstream 28795 50373562 ~ 50373769 (+) True G814594
TU926636 lncRNA upstream 30188 50365798 ~ 50372376 (+) True G814590
TU926480 lncRNA upstream 43195 50355269 ~ 50359369 (+) True LOC110532305
TU926538 lncRNA upstream 182760 50219592 ~ 50219804 (+) True G814494
TU926670 lncRNA downstream 14273 50422643 ~ 50422974 (+) True G814621
TU926673 lncRNA downstream 23520 50431890 ~ 50432090 (+) True G814624
TU926675 lncRNA downstream 25192 50433562 ~ 50433778 (+) True G814626
TU926677 lncRNA downstream 26353 50434723 ~ 50434938 (+) True G814628
TU926680 lncRNA downstream 28667 50437037 ~ 50437266 (+) True G814631
XM_036988238.1 mRNA upstream 43201 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA upstream 43201 50224844 ~ 50359363 (+) False LOC110532305
XM_021616072.2 mRNA upstream 197558 50185465 ~ 50205006 (+) False LOC110532304
XM_021616065.2 mRNA upstream 433833 49956841 ~ 49968731 (+) False si:dkey-8e10.3
XM_036988236.1 mRNA upstream 433833 49956841 ~ 49968731 (+) True si:dkey-8e10.3
XR_005053278.1 mRNA downstream 15076 50423446 ~ 50428094 (+) True LOC118966068
XR_005053279.1 mRNA downstream 37182 50445552 ~ 50556296 (+) False si:dkey-178k16.1
XM_036988244.1 mRNA downstream 37182 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988245.1 mRNA downstream 37182 50445552 ~ 50557497 (+) False si:dkey-178k16.1
XM_036988246.1 mRNA downstream 37182 50445552 ~ 50557497 (+) True si:dkey-178k16.1
TU925067 other upstream 1286946 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1395854 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1442573 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1831971 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2420263 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 387844 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 387950 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 670077 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 937002 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1914901 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile