RNA id: XM_021616081.2


Basic Information

Item Value
RNA id XM_021616081.2
length 1794
RNA type mRNA
GC content 0.44
exon number 14
gene id ttll9
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50410918 ~ 50421336 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTCAGTGTGTCGTGTACTGACTTAAAAGGGGGGTCTACCAGTGCTGTACgctttttctctcttcctatgATTTGggaaatatgtaaataaatgttcAAAGATTGTGTGTAATTCATTGGAATTCATGAGTATAAATACAGCTTTTTCATTCATGAGGTTGCCATGACAACATGTGTTGTCAAACCAGACTGCTGGATACAAGGGTCCTTATGGTTATCAAAAAAGAAGAGAGGGGGATGGAAGAAGTTGTGTACGTTACAAATGTGGCCTAACAAATACCATTCAGGATGTCTTGCGACAAAGACCAGGCTGGATGGAGGTCAAAGATGATGGAGAATGGGATTTTAACTGGTGTGATGTTGGGTGGCTGAGGGAGAATTTCGACCACTCCTACATGGAAGAACACGTGAGGATATGCCATTTCCGCAATCATTATGAGCTGACGCGCAAGAACCTAATGGTGAAAAACCTGAAGAGGTACCGCAAAACCCTTGAGAGGGAAGCTGGCCGCATTGAAGCGTCCAAATGTGACTTTTTCCCCCGGACCTTTGAACTACCCAGTGAATACCACCTCTTTGTGGAAGAGTTCAAACGGAGCCCGGGCAGCACCTGGATCATGAAACCAGTTGCAAGATCTCAGGGGAAGGGCATTTTCCtatttcaaaaactgaaagacATCATggactggaaaaagGATGGGAGTCGCtcagaggagcagagagatgagaCTCAAGTGGAGAGCTACGTTGCACAGCGCTACATAGAAAATCCCTATCTTATCAGTGGGAGAAAATTTGACTTGAGGGTTTATGTATTGGTTACATCATATATCCCACTGAAGGCATGGTTATATCGAGATGGTTTTGCCCGATTCTCCAGCACCCGATTCTCTCTCACCAGCATTGATGACCAGTATGTCCATCTCACCAATGTGGCAGTGCAAAAAACAGCACCAGATTATGATCCTGAAAAGGGCTGTAAGTGGCAGATGCAGCAGCTTCGGCGATACCTGACTGCGAGGCATGGCACAGAGACCATAGAGGCTCTGTTTAAGGACGTTGACAACATATTTGTCCGTAGCCTGCAGAGTGTGCAGAAAGTAATCATCAACGACAAACACTGCTTTGAGCTCTATGGCTATGACATCCTACTGGATCAGGACCTCAAACCGTGGCTGATAGAGGTGaacgcctctccctctctcaccgccAGCAGCCAAGAGGACTACGAGATGAAGTGTTGTCTGCTGGAGGATACCTTACACATTGTGGATATGGAGGGCAGATTGACTggcagagagaagagggttggtggCTATGACCTTATGTGGAACGATGGACCCGTCTACAGAGAAGATGTCAACCTAGAGACACTGGGCAGTGCCTGTTTCACTGCAAACACACACCTCGGCTGTGTAAACGACAGAAAGAAGCAACTCCGTCAGCTTCTAAAACCATTTCCAAGCAAGAAGAGGATATGACACACTACCCAAAAAGATTTTCCAATTGAAATCAACAAGCCTACATATCACCACAGTTTCCATCAATATTTCATAAATATGTATTTTCTTACAACCTCACTCAGATGGTGAGGTCACACTCACACAATGACATCACTCGATGATTCAGTGCAAAGCATATTTATTTCTATGCCTTACAAACAACTGCATTCAACATTGAGAAAATATGCACCACTTTCTGTGTGCGTGTGAATGTTTACGACAACTCTACTCCCTGATCTATGGCTTAGATACTTTACATTAATATTGAATAAATAAAGTGCAATTTAACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927259 lncRNA downstream 34454 50376112 ~ 50376464 (-) True G815154
TU927242 lncRNA downstream 51556 50355269 ~ 50359362 (-) True G815142
TU927156 lncRNA downstream 158707 50242467 ~ 50252211 (-) True G815056
TU927143 lncRNA downstream 193146 50217123 ~ 50217772 (-) True G815043
TU927118 lncRNA downstream 217362 50156143 ~ 50193556 (-) True G815018
TU927283 lncRNA upstream 5950 50427281 ~ 50428081 (-) True G815174
TU927285 lncRNA upstream 9219 50430550 ~ 50430800 (-) True G815176
TU927286 lncRNA upstream 9803 50431134 ~ 50431348 (-) True G815177
TU927288 lncRNA upstream 12623 50433954 ~ 50434181 (-) True G815179
TU927291 lncRNA upstream 15724 50437055 ~ 50437255 (-) True G815182
XM_021616074.2 mRNA downstream 9000 50380239 ~ 50401918 (-) False pnck
XM_021616076.2 mRNA downstream 9000 50380239 ~ 50401918 (-) True pnck
XM_021616077.2 mRNA downstream 9005 50394333 ~ 50401913 (-) True ppp1r3da
XM_036988241.1 mRNA downstream 9017 50380239 ~ 50401901 (-) False pnck
XM_036988240.1 mRNA downstream 9021 50380239 ~ 50401897 (-) False pnck
XR_005053469.1 mRNA upstream 96813 50518144 ~ 50518200 (-) True LOC118966203
XM_021616090.2 mRNA upstream 142231 50563562 ~ 50616083 (-) False cntn3a.1
XM_021616085.2 mRNA upstream 142231 50563562 ~ 50666845 (-) False cntn3a.1
XM_021616086.2 mRNA upstream 142231 50563562 ~ 50666845 (-) False cntn3a.1
XM_021616087.2 mRNA upstream 142231 50563562 ~ 50666846 (-) False cntn3a.1
TU927145 other downstream 191070 50218867 ~ 50219848 (-) True G815045
TU927144 other downstream 192221 50218356 ~ 50218697 (-) True G815044
TU926169 other downstream 674807 49735145 ~ 49736111 (-) True G814157
TU926019 other downstream 944156 49463957 ~ 49466762 (-) True G814020
TU925294 other downstream 1495214 48915435 ~ 48915704 (-) True G813357
TU930130 other upstream 1731951 52153282 ~ 52153642 (-) True G817848
TU930410 other upstream 2242122 52663453 ~ 52668720 (-) True LOC110532367
TU930441 other upstream 2305836 52727167 ~ 52731623 (-) True G818117
TU931625 other upstream 3584216 54005547 ~ 54065096 (-) True LOC110531203
TU931959 other upstream 3863716 54285047 ~ 54294840 (-) True cep104

Expression Profile