RNA id: XR_005053279.1


Basic Information

Item Value
RNA id XR_005053279.1
length 3590
RNA type mRNA
GC content 0.54
exon number 22
gene id si:dkey-178k16.1
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 50445552 ~ 50557497 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGTTCCCTTGTCCCCTATAGCACGCCCCTCCGTCTTTCCTCCGCGCCTTCCCGGTCGTGCCTCCCATCTATTCTCTCGCGCCATCTCCCGGGGAAAAGAAGCTGAGGGGCGGTGGCGGCGTCGGTGTAACGTTGCTTCGCTGGCCTGTAACCTCAATGGTCCACATCTAGACTGAAGACTGACAGTTGGACCCGACAGGACAGGATTGCATTCCATTACCATGACCACAGAAAAGGGATTGCCCATGGAGATGAAGAGTACCATGGAGGGTGATGTCAGGAGGACCAATCAGGATCATGACAGTAAGACGTCAGATGACCATCATGGGGACATGGATGACAGCTCAGAGAAGACCCCCAGCAAAGCATCAAAATCCCCCCAGAAATCTTCCAAACGCCCCAAAACCGTTCCTGTCAAAATCTCCCTACTTGACGGCTCAGAGTATGAAACTGGAGTAGAGAAATTTGCCAGGGGGCAGTCCGTGCTGGACATGGTGTGTGGCCATCTGAACCTGCTGGAGAGGGACTACTTTGGCCTGACGTTCTATGACACAGACAACACCAAGAATTGGCTGGACCCGTCAAAGGAGATCAAGAAGCAAATCCGAATTGGCTCATGGCATTTCGGCTTTGCTGTCAAGTTTTATCCCCCTGACCCATCTCAGCTCACTGAAGACATCACCAGGTACTACCTGTGTCTACAGCTGAGGGACGACATGCTGTCCTGGCGTCTGCCCTGCTCCTTCGGGACCTACGCCCTGCTAGGTTCTTACACGGTGCAGGCGGAGCTGGGTGACTATGAGCCAGAGGAACACGGGCCCGACTACATCAGTGACTTCCGTTTCGCCCCCAACCAGACGAGGGAGCTagaggagagggtgatggagcTTCACCGCAACTACAGGGGAATGAGTCCAGCGGAGGCAGAGGTGAACTTTCTAGAAAATGCCAAGAAGCTTTCCATGTACGGTGTAGACCTGCATCATGCCAAGGATTCAGAGGGCATTGACATCATGCTTGGCGTCAGCGCCAACGGACTACTCATCTACCGTGACCGTCTGAGGATCAACCGCTTCGCCTGGCCGAAGATCCTCAAAATCTCCTACAAGAGGAGCAACTTCTACATCAAAATACGCCCCGGGGAGTATGAACAGTTTGAGAGCACCATCGGCTTCAAGCTGCCCAACCACCGGGCTTCCAAACGCCTGTGGAAGGtctgcattgaacaccacaccTTCTTCAGGTTGGTGTCTCCAGAACCCCCTCCCAAGGGCTTCCTGGTGATTGGCTCCAAATTCCGCTACAGTGGGCGGACCCAGGCCCAGTCGCGTCAGGCCAGTGTGCTGATCGACCGGCCAGCTCCACAGTTTGACCGTTCGGTTAGCAAGAGGTACCTGCTGCCCCGCAGTGTGGATGGAGCATCAGCCCTGGGAGACAGCATGGACCAGCTGTCCCAGCGCAGCTCCAGTGATCACACCCAGTTCCTGTCCAGAGAAGACCTGGAACAAGAGGGCAGTCTGGACCTAGACCAGGATCAGGATTACCAGGAACAAGACCAGGAGTACCAGGATCAGGACGAGGAGACTGATGGTTTTGCCACGTCCGCCAAGACCATGGAGCTGAAGGGTGAGGAGGCAGGCTCGCCAGTAGACTCAAAGCTTGAGcaGCAGTTCCTGGACAAGCCCGAGGATGTCCTGCAGAAGCACCAGGCCAGCATCAACGAACTAAAGAGAGCTCTCAGGGAGCCCAACAGCAAGCTGTCACAGAGGGAGAAACGCTTGTCCACAGCCACGCCCCCTGGAGGCACCCCAGAGAGGAAACAGGAGACCCCTCCTACACCTGCCATTCATGAGGAGCCTTTTGACGAAGCCATGAGGGAGCCGTGGGAGAGGCGGTTGGGCTCAGTGTCAGAGGACGACCAAGACCACGAGACCCTGTACCTGAAGGAAACCCACCTGGGCATTGAGCGCAAGTGCTCCAGCATCACGGTCAGCTCTACGTCCAGCCTGGAGGCCGAGGTGGACTTCACTGTCCTCATGGACCTCCATACGGGCATGGAGGAGTTCTCCAGGGGCATGATGGAGCTGGGCGAGAGGCCCATGTCACCTGACGTGGGCCTCAGCCTGAGTATCGACCTGCAGGGAACCCTGCCACCTCTCGTCTCGGCTCCTCTCACCGGGGCTAGCAGCAGCCCTCCTACCAAGCAGCTACACACCGAAGACGTCCGACATCATGAGCCTGTTGTGCCCAGAAAACCAAAGAGGTCAGTTCCCATCGACAGAGACCAGTCACAGAAAGATACCACTTACTCATCCCCCATGACAGCACTGAGCAGAGAGGCTAGTGATGTCGTCGCCTCCCATGCACTGAGGAAGACTGAGGTCAAGATCGACAGAGACCAGTCACAAAAAGAGGCCACTTACGTGTCCCCCATGACAGCGCTGAGCAGGGAGGCTAGTGATGTCGTCGCCTCCCATGCACTAAGGAAGACTGAGGTCAAGATCGACAGAGACATGTCACAGAAAGAGACCACTTACGTGTCCCCCATGACAGCACTGAGCAGAGAGGCTAGTGATGTCGTCGCCTCCCATGCACTAAGGAAGACTGAGGTCAAGATCGACAGAGACCTGTCACAGAAAGAGACCACTTACGTGTCCCCCATGACAGCACTGAGCAGAGAGGCTAGTGATGTCGTCGCCTCCCATGCACTGAGGAAGACTGAGGTCAAGGTCGACAGAgaccagacagtcagagagaccaCTTACGTGTCCCCCATGACAGCTCTGAGCAGAGAGGCTAGTTGCGTTGTCGCCAGCCACGCATTGAGGAAGACCGATGTCAAGGTCGAGACACAGCCCAATGGGTCAGAGGTCACTACAACCATCGTGGAGTTTACAGATCAGGATCATGGTGTGACTGTAAGCAGTATAGGCGAGACTTCTTATTCAACAACAGAAGGTGTTTCCCCTGTGCACATGTGTACGTTGGGAAGAGAGGCCTCTGGATCTCCAATACTTGTTACTGAGAATGTTACCTCTGCAACCACGCATGTCACCAAGACGGTGAAAGGGGGCTATTCAGAGACCAGAATTGAGAAGAGGATCATAATCACAGGAGATGATGATGTTGACCAGGAGCAGGCCCTCGCTATTGCGATACAGGAAGCCAAGCAACAGCATCCGGACATGTTGGTCACCAAGGCAGTAGTTGTCAAGGAAACAGAATCGTCCACTGAGAATCCACATGGGACATCTTAGGTACAGGGGTCTTCAAAACATTAAACAATGACAGGTTTCTATTGTGAATTGAATCTCCATAACCTCTCTGCATGAAAGGTTGGTAGTTCCTTTCATCTGGTGTCATAGTTtaaaccagggatgggcaactggcggccaCCCCATTTGAAGGCCCTCGGATCATTTCGCGGGGGGTAgggaactcagtcggggtctcaactgtTACTGTTGCAAGGTAGAATactagaatacacaaggtgcaatttcgaaatgtgGTTGTTGTGCATCAACAGTTTTcatcttgttatgtcactaacatgttttagattggtaagttagtctagcggccagctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU926680 lncRNA upstream 8286 50437037 ~ 50437266 (+) True G814631
TU926677 lncRNA upstream 10614 50434723 ~ 50434938 (+) True G814628
TU926675 lncRNA upstream 11774 50433562 ~ 50433778 (+) True G814626
TU926673 lncRNA upstream 13462 50431890 ~ 50432090 (+) True G814624
TU926670 lncRNA upstream 22578 50422643 ~ 50422974 (+) True G814621
TU927527 lncRNA downstream 211688 50767984 ~ 50768212 (+) True G815404
TU927530 lncRNA downstream 216816 50773112 ~ 50773312 (+) True G815407
TU927546 lncRNA downstream 236443 50792739 ~ 50792971 (+) True G815423
TU927549 lncRNA downstream 238918 50795214 ~ 50795433 (+) True G815426
TU927550 lncRNA downstream 239379 50795675 ~ 50796164 (+) True G815427
XR_005053278.1 mRNA upstream 17458 50423446 ~ 50428094 (+) True LOC118966068
XM_021616079.2 mRNA upstream 37182 50402564 ~ 50408370 (+) True fam217b
XM_036988238.1 mRNA upstream 86189 50224844 ~ 50359363 (+) False LOC110532305
XM_036988239.1 mRNA upstream 86189 50224844 ~ 50359363 (+) False LOC110532305
XM_021616072.2 mRNA upstream 240546 50185465 ~ 50205006 (+) False LOC110532304
XM_021616097.2 mRNA downstream 409421 50965717 ~ 51041645 (+) True cntn3a.2
XR_002474819.2 mRNA downstream 488119 51044415 ~ 51056932 (+) False exosc10
XM_021616098.2 mRNA downstream 488134 51044430 ~ 51056932 (+) True exosc10
XM_021616099.2 mRNA downstream 504776 51061072 ~ 51067904 (+) True srm
XM_021616100.2 mRNA downstream 550031 51106327 ~ 51107746 (+) True cort
TU925067 other upstream 1329934 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 1438842 49003319 ~ 49006710 (+) True G813074
TU924989 other upstream 1485561 48959749 ~ 48959991 (+) True G813071
TU924562 other upstream 1874959 48545454 ~ 48570593 (+) True G812688
TU923963 other upstream 2463251 47982001 ~ 47982301 (+) True G812143
TU927553 other downstream 239918 50796214 ~ 50800381 (+) False G815428
TU927551 other downstream 240024 50796320 ~ 50800381 (+) True G815428
TU927741 other downstream 522151 51078447 ~ 51078942 (+) True G815610
TU927907 other downstream 789076 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1766975 52323271 ~ 52325640 (+) True LOC110532349

Expression Profile