RNA id: XM_021616103.2


Basic Information

Item Value
RNA id XM_021616103.2
length 3299
RNA type mRNA
GC content 0.46
exon number 9
gene id pex14
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51202733 ~ 51319382 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGAacgaaaaaaaacaaaaaacataatgTCGGAGTTTTAGTCCAGTCGTCCTTATTCAGGCCTAAGCAATCGTTCCCGAATGAATCGATTTGAAGAGGAGTAGGCTGGGAAAGATGGCATCTTCTGAACAATCTGATCCGCAAACACAGCCTCGTGCTCCGTCCAGAGATGAAGTTGCCCCCAGAGAAGCACTGATAGCCACAGCTGTGAAATTTTTACAGAACCATAAAGTGCGTCAAAGTCCACTGGAAACCAGAAAAGTTTTCCTGAAGAAAAAAGgtTTGAATGATAAGGAGATTGAGCTTGCCATCCAGCGCTCAGGCAGTACTGACGAGCCCCTGGCCCTTACCCCTGTGGGACCCCAGTACCCTCTCCTTGCCCCCCAGCTGGCACCTATACCCTACAGTCCCCGTGGCTACAGATGGAGAGACTACGGTGCCCTCACTGTCATCATGATGGGCATGGCCTTTGGCTTCCATCACCTCTACAAGAAATACATCCTTCCCCTCATTATGGGCAGCAAAGAGGACAAGAAGCATCTGCAGAGAATCGAGAGCAACATCGCCGAGATGAGTGGCACGCTGACACAGACAGTGACCCAGCTCCAGCAGACCCTGGCTACAGTACAGGACCTCCTGGTCCAGCAGCAGCAGAAAATGCATGACCTGTCTCAGGAGTTATCTACCTCTGAGGCATCCTCTTCAACCAACCGCATCCTGGATACCCAGACCATCGGCGATCTGAAAGCTGAAATAGGGTCATTGAAGGGCTTGCTTCTCGGCAGgAGGCAGTTCCCCGCATCACCATCCGTCCCAAAGATTCCCTCCTGGCAGATGCCCCTGAAGCCGGCCACCATCTCCACCAGCTCTCCTTCCATCAACCACACCAACAGCAGCAGCGACATCTCCCCCGTCAGCAACGAGTCGGCTTCCTCCTCCCCCATCAAAGATGGCCGCCACAGCCCCCAAGACGCCCTGGGAGGTCCTGACGGAGCCCACGGCCTCAACGGAGAGAATGGCATGGGGCTGGGAGGAGGAGCCACACTGCCCCCCCTGGACCTTAAGGATCAGGTCCGCATGGAGGTGCagggtgaggaggagaagaaagaggaggatgtgaaggaagaagaggaagaggaagatgacgTGAGccatgtggaggaggaggagcatcTGAGCGTGCCAGCGGAGGATCGTCGAGGGGGGGACGGACAGATCAACGAACAGGTGGACAAGCTGAGGAGGCCCGAGGGGGCCAGCAACGAGAGCGAGGTGGATTAGACCAGACCGTGAGCACAAAGCACAACAAAACCCCTTTTTCCTTATGGTTCTCATTTCATTTGAAGGTCCTGTTTCAGTCTGGTCCCATTTGACCATCCTTTCTGTAACTGTACTGTTTTGCCTCTGTTATATAGTGAACAATCTCAATTATGAGCGAAGGTTTGAGAAacatagcaacaaaaaaaaggttAATGTTGGTGTGTCTGGCCCTTGTAAGCACCTGGCTTACATCAATTTACTTTTCATCATTCAAACAAAACGATTGCATGCCTGGGAAAGTAATGTGAAGTTTCAGCAGGATGGGGGAGATAAGAGCAATATTCAATACAAATTACTATCAAAAATTATTTGCAATCCTGCTTTCTCTTATTCCTTGTGTAGCACTTAGTACTGTCAATTTTCATGACTGACAATAATCACCTGGTGTAGTGAGCTTGGTTTCCAATGTATCTGAGCTCATTTGAAGAATCATTtgagggtgtgtcccaaatggcaccctattccctatgttttGACATGGGTCTGTAGAactttggtcaaaagtattgcactatatagggaataggttgccatttggtacTCAGCCTGAGTAACCTGTTCTGGACACCAAAGAAATTGTATGCTCCCCTATATTCTTCAGTTCTATGTAAGGAGTCAGACGGCTTGTCCCCCTGTACTCGTCTCAAAGTCATCCCAGAGATCACTGAAAATATTACTGGGACTGCGTCTGaaacagaaccctattccctatccgattcactacttttgaccaatagTAAGGCactccatagggaatagggtgccatttcagacgcagtCTGTCAACAGAGCCGAGGGAGAGGACAAGCAGCGTTAGGCTAGGGCAGCGTTAGGCTAGGGCAACGTTTAGGATCTTTCATGTGTCCCCTCACATTGGTGTCAGTCTGTCAATAATTCAGAAAGGCCAGGAGGTGGCATTTGGGCTGAAATAAAAGCCTTGAAATTTGAGATTAGAACACGATGACGGGTTTTGTTCCACGAGCGTTCAAGAGCGCTGAAAGGAAGGGAagataaatgtgtttttttaccTCTTTCTAAAGGGGCTGCCTCGTGCATTCTGTCACTCTGTATGTGGTGAGAGAGATCCCAGCCTGCCTCTTCAGCTGCATCTCAGTCTCCAGCAGGGCTAGCTGAATTGGTTTATGAAGTATGTTAATAATCAAATGATCAACAAATAACAGATGTATTAGTTCATGCAGCTTGAAATGTCAAGGAGGCTAAAAGCGGAAATCTAATCGTGAAAGCCCTgttgtattatattttatttcatgACAAACCCTCCGGTCCAAATTATATAGGCCTCCTACAGTGAGTAATCTTTTACGCTAAAACAGCGCCAATATTTTGTAATTAAACCGTATAAAACAATGGATGTCACCATGGATGTTGTGGCAGGTGGGAATCTAGGTCTGAAGGCAGAGGTGGGGGCGGGAGGGGGAACTGAAAGTAATGTATGAATACCTACCTTATTAAATTACTCACTCGCCAGCTGATGAGATAGAGAAAAAAGGTCCACGAGTGAAAATGAGGGTATCAGCTCTCTTGTGGTATTTTAACTTGCATCAAAGGGCCttcaaagtaacacaataacggtAGAGGTAGGTGAACCTTTCTAAGTGGCAGCAGTCATAGTCCGCAAACGCTGTGTCTATTAGAATAGAAGTAACAGGGTAGTAAAGAATCTGAAGTATGATACTGTCATGAGAGATTCTTTTGTTTGCAATTGTATTGGACATGATCTGACATTCTGATCTATGAATTTGTCTGCGAATGAAGACCACTGATTGATAATGTGGGCAGAATTGCTAAAATGAGAGGTCCCCAAGTGTCACTCATGCCTTTTAAACTACTGCAGtttcactgactggtcctctatgtATAAAATGTACCCAGCTTATAATTGTGACTGTATGAGCTTCTGATATCAAACAGAAATGTATATTATTGTAATAAATTTGGTTTATCTCAAGTTACTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU927774 lncRNA upstream 84337 51118100 ~ 51118396 (+) True G815643
TU927761 lncRNA upstream 104724 51097779 ~ 51098009 (+) True G815630
TU927760 lncRNA upstream 105137 51097362 ~ 51097596 (+) True G815629
TU927742 lncRNA upstream 114090 51079556 ~ 51088643 (+) True G815611
TU927710 lncRNA upstream 185952 51015307 ~ 51016781 (+) True G815580
TU927832 lncRNA downstream 6522 51325904 ~ 51326252 (+) True G815695
TU927834 lncRNA downstream 11465 51330847 ~ 51331428 (+) True G815697
TU927833 lncRNA downstream 12613 51331995 ~ 51333094 (+) True G815696
TU927909 lncRNA downstream 28849 51348231 ~ 51350203 (+) True G815768
TU928579 lncRNA downstream 280077 51599459 ~ 51599793 (+) True G816426
XM_021616101.2 mRNA upstream 20999 51173762 ~ 51181734 (+) True masp2
LOC110531197 mRNA upstream 75221 51125135 ~ 51127512 (+) True LOC110531197
XM_021616100.2 mRNA upstream 94987 51106327 ~ 51107746 (+) True cort
XM_021616099.2 mRNA upstream 134829 51061072 ~ 51067904 (+) True srm
XR_002474819.2 mRNA upstream 145801 51044415 ~ 51056932 (+) False exosc10
XM_036988264.1 mRNA downstream 386484 51705866 ~ 51709459 (+) False tardbpl
XR_005053280.1 mRNA downstream 386484 51705866 ~ 51710352 (+) False tardbpl
XM_036988263.1 mRNA downstream 386485 51705867 ~ 51709459 (+) False tardbpl
XM_021616112.2 mRNA downstream 386486 51705868 ~ 51709459 (+) False tardbpl
XR_002474820.2 mRNA downstream 386486 51705868 ~ 51710349 (+) True tardbpl
TU927741 other upstream 123791 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 402352 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 402352 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 2087115 49115137 ~ 49115618 (+) True G813139
TU924996 other upstream 2196023 49003319 ~ 49006710 (+) True G813074
TU927907 other downstream 25990 51345372 ~ 51346494 (+) True G815767
TU929026 other downstream 1003889 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 1407039 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 3407489 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 3913876 55233258 ~ 55233798 (+) True G820665

Expression Profile