RNA id: XM_036988264.1


Basic Information

Item Value
RNA id XM_036988264.1
length 2145
RNA type mRNA
GC content 0.44
exon number 6
gene id tardbpl
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51705866 ~ 51710352 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGTCATAATTTGTGTACAAGCAAAGCGGACATTTTAGAAGTTTGAAGGTAAAGGAGATTAGCTGACGACTTTCATATAATTTTTTCGTCTCATAAATTTGAGGTGTAGTTATGCTGGTTTTATAATTTAATTCAAGAACCGGGTCGACCTCGTTCTTTGAACTAGTAAAGAAGTTGAGTCCAATATTTTTGTATCGTATGCGGGCAAGATCCTGCTGCTAGCTCGTCATTTTGCAAGTGTGCGTTGTTTTTTTAGCCCGTTAAAAGAGGGCCCTTTCAGCTCTCAGACGCCAAATCTAGTTTTTTTTCCTTCAAAATAGACGCATGGCCCGTGAACGTATAAATTATAACTTGTGTCTTTGTCATTTTATTAAAATAGCTAGATTAGAAGCGCTTTGGAATATTGCTAGGCCaactggcttgctagctaacaattGACAACCCCGCGTGCGCCATCAGCTTTGTGACCGTGAATTagccattagctagctagtttacgtTACTTGCTAATCTAATTTAGAGACCATGGCAGAATTATACATTCGCGTGGGAGAGGATGAAAACGAAGAGCCAATGGAGATCCCATCTGAGGATGATGGCACTGTTTTGCTGTCAACAGTAGCAGCCCAGTTTCCCGGAGCGTGCGGCCTACGTTACAGGAGCCCTGCGTCTCAGTGCATGCGAGGCGTCCGTCTGGTTGAGGGCATCTTGCATGCACCTGAGAATGACTGGGGTAGTCTGGTGTACGTCGTCAACTACCCAAAAGATAACAAAAGGAAGATGGATGAAATGGATGCCGCCTCTGCTGTAAAAATGAAGAGAGGTATTGATAGAACATCAGACCTCATTATCCTTGGGTTGCCATGGAAAACATCTGAGCAAGATTTGAAAGACTACTTTGCCACTTTTGGAGAAGTCATCATGGTGCAGGTCAAAAGAGATGTCAAGACTGGGAACTCAAAAGGGTTTGGCTTTGTTCGGTTCACTGAGTATGAGACTCAATCCAAAGTGATTTCTCAGCGACACATGATCGATGGAAGATGGTGTGACTGCAAACTACCAAACTCTAAGGTATTTAATCAATATGCAGGGCCTGATGAGCCCATGCGCAACTGTAAAATCTTTGTTGGCCGCTGCACAGAGGACATTACCACTGATGAGCTCCGGCAGTTCTTCATGCAGTATGGCGAGGTCACCGACGTCTTCATTCCTAAACCCTTCCGGGCGTTTGCCTTTGTCACTTTCTCAGATGACCAGGTTGCCTCAGCATTGTGCGGAGAAGACCTGATCATCAAGGGTGTCAGCGTGCACATCTCCAACGCCGAGCCTAAGCACAATAATATTAACCAACTGTTTTCGAATTTCCCGGGAAGAAGCCCCTCGTTGGCAGCAATGTTCGACCGAACTCAGTATCGGTACCCCTCTTCCCATGTGTAAATGCTTTGCCATCAAAAGACACAGCTTCACTCTGCATATACTGTGTTAGACGGTGGGTGttgcctttttttctcccctcttCATGGATATACAAATCTTGTCTGCTTTTTGTATCGCTTTTGAGAACAATGCGATTGGTGGTGGCCAAAGAGTGAGACTGAGTGAGCGAACGGGAAAGAAAGCAAGTGTGAAGAGGACTGGTTGTGCGATGCTAAAGGGCCAGATGTCTGCGAGAGTTAAGAATAACCTGTGGCTTTGTGCGAGTGTGAAAGGAAGAAGCAAGTACGAGTGTGTTCCATATGACCATCAAAAGGACATTTATCGCATATTGAGATCCCCAAAGTCTCCTTTCTCTAATATTTCTATCAAACTTCATCTTAAATACAGTGGAATGTTTAGCGCTATGGATATTTGTATCCTTTCTTGCTGTCTGATTTGATGTGAATGCTGTGTGCTTTAGTTTCTTCTTGTTCCTACCTACCCCTTTGTGTGAAAATGTGACCTGTTGGTGATTCTGTGTTGAGAGCACTGGGGGAGCTTGGAGGAGTGATGTGCAAGTGAACTCGTGTGTCTTAAGAGGGTGCAGTGGCGAGCGTTTGACGAGTCCCTATTGAAAGTTTGTTGAAGTgtttttgaatgcattttatatGTTTTGTGAATCAAAGGGAATTCTCAAATAAAATTTGACTAGGTATTTTGCCTACCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928663 lncRNA upstream 4896 51700699 ~ 51700970 (+) True G816505
TU928662 lncRNA upstream 7477 51698163 ~ 51698389 (+) True G816504
TU928580 lncRNA upstream 105540 51599976 ~ 51600326 (+) True G816427
TU928579 lncRNA upstream 106073 51599459 ~ 51599793 (+) True G816426
TU927909 lncRNA upstream 355663 51348231 ~ 51350203 (+) True G815768
TU928633 lncRNA downstream 18312 51727771 ~ 51737134 (+) True G816478
TU928677 lncRNA downstream 36278 51745737 ~ 51746013 (+) True G816519
TU928679 lncRNA downstream 38021 51747480 ~ 51747703 (+) True G816521
TU928680 lncRNA downstream 38598 51748057 ~ 51748477 (+) True G816522
TU928767 lncRNA downstream 146146 51855605 ~ 51857288 (+) True G816600
XM_021616103.2 mRNA upstream 386484 51202733 ~ 51319382 (+) False pex14
XM_036988251.1 mRNA upstream 386484 51202761 ~ 51319382 (+) True pex14
XM_021616101.2 mRNA upstream 524132 51173762 ~ 51181734 (+) True masp2
LOC110531197 mRNA upstream 578354 51125135 ~ 51127512 (+) True LOC110531197
XM_021616100.2 mRNA upstream 598120 51106327 ~ 51107746 (+) True cort
XM_021616133.2 mRNA downstream 211687 51921146 ~ 51924442 (+) False lzic
XM_021616132.2 mRNA downstream 211765 51921224 ~ 51924442 (+) False lzic
XM_021616131.2 mRNA downstream 211823 51921282 ~ 51924442 (+) True lzic
XM_021616142.1 mRNA downstream 464551 52174010 ~ 52176441 (+) True LOC110532337
XM_021616144.2 mRNA downstream 472769 52182228 ~ 52189437 (+) True LOC110532339
TU927907 other upstream 359372 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 626924 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 905485 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 905485 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 2590248 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 613812 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 1016962 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 3017412 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 3523799 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3821578 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile