RNA id: XM_021616131.2


Basic Information

Item Value
RNA id XM_021616131.2
length 1649
RNA type mRNA
GC content 0.39
exon number 7
gene id lzic
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 51921146 ~ 51924442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttttagCTAATCCTAACAATTTTCTAACTTTAACCAAATTCTCATAACCTTCGACATTTAATAGGCTACGTAATTTCTCATAAACCGGCTACGAAAAGTCAATTCTGACAAATGCTGGATCCCTTCTATCCATGACCACAAACAAGAGCTACGTTCACAACTCCCACACTCCCCAATGTTTTTTGACAGTATTTTGTAACACATTTCATGGAGAAGTATTCAAATATATGTTCACCTCTTTCCTAAATTGATTGTGTTGAGGCGAGTTATATTTTTCTAACGATCAGGTGAGGATTACTTATTTAATTTTTTCAAGCCAGCAGCTAGACAACTATAGCCACAGGCTAGACTACTACACGCACAAAAAAACTGTCTCAGTCAGATGAATCTGGCGGCCAGTGGGAACAAGGGTGGAAGCATGGCTTCTCGTGGCAAATCAGAAACTGGGAAACTAAAACAAAACATGGAGGAGCAACTGGACAGATTGATGCAACAGCTCCAAGATTTGGAAGAGTGCAGAGAAGACCTAGAAGAGGAGGAGTATGAGGAGACCAAGAAGGAAACCCTGGAGCAGTTGAATGAGTTCAATGAGTCTCTGAAGAAGATGGTGACAGGCAACATGACACTGGTGGATGAGCTTGGAGGAATGCAACTGGCAATCCAGGCTGCCATCAGCCAAGCTTTCAAGACCCCCGAGGTGATCCGAATGTTTGCCAAGAAGCAACCGGGGCAGTTGAGAACCAGATTAGCAGAGATGGACCGTGATGTCATGGTGGGAAAACTTTCGAGGGATGTGTACACTCAGCAGAAGGTGGAGATCCTCACTGCCTTGAGAAAACTGGGCGAGAAGCTTACAGTCGAAGACGAGACTTTTCTGGCTGAAAATGTGACCGCAACTCTCAGCCAATTTGAAAAAATCACTGCAGACCTCGGATCAGAAGACAAGATAATGGCTTTAGCTAGTTCTGGTGTGGAGAAAACCAAGGTATAGAGGATAATCAGGTGTTGTCCAATGTCTATGTTGTTTAACATCAAGTGTTTCCACCCAATAACAGTGCCATAATATTGATAATGTAAATCAATCATGCACTTAGACCGTACTTGCTTTTAAAGAGTAAAGTTAACCTTttgtacactttttttttttctgaTGATGATTGTAAAACTTGGTATGCATTTGGTACTAGAGTAGTCTATTTATAATTTGAACAGTCCATCGGTCATCCTTTTTGTTAAGTGTGGCTCAGACATTTTGAAGGCTTTAAATTCAGTTTTCATACAGATTGTCTTCATGGCTAAATCATTTTGTTTTAGCTCTTGGATTAAATTATTTTTCCTGCATAACTGTTCatgtcaaaataaataaatgaatcatTGCAGTGTTAAATATGCAATGCTGGGCTTAAATGTGATTGCATAACACACCAACTTGAACCAGCTCTGATTCTTAATTGAGAGGAGCCCGAAAATGTCAAAAGTCAGTTTACATGCATCATTTTGGATGTGTAGTGTGTTTGATGTCTGACAAAATACTTTCTAAAAATGTAGTCATAAGTGGTATAAGTTTCTCTATGATTTTTGTATTCCTAATATAAAGTTAAATTTCTCAATCTTCTGTCTTATTAAATATAGTAGTGTTGTGGTTAAAA

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007417 central nervous system development biological_process
GO:0008013 beta-catenin binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928791 lncRNA upstream 14636 51906325 ~ 51906646 (+) True G816624
TU928769 lncRNA upstream 53286 51867459 ~ 51867996 (+) True G816602
TU928767 lncRNA upstream 63994 51855605 ~ 51857288 (+) True G816600
TU928680 lncRNA upstream 172805 51748057 ~ 51748477 (+) True G816522
TU928679 lncRNA upstream 173579 51747480 ~ 51747703 (+) True G816521
TU928817 lncRNA downstream 28403 51952845 ~ 51990544 (+) True G816646
TU928835 lncRNA downstream 43118 51967560 ~ 51979205 (+) True G816663
TU928815 lncRNA downstream 93501 52017943 ~ 52036096 (+) False G816645
TU928816 lncRNA downstream 93501 52017943 ~ 52050502 (+) True G816645
TU928909 lncRNA downstream 190785 52115227 ~ 52115437 (+) True G816733
XR_005053280.1 mRNA upstream 210930 51705866 ~ 51710352 (+) False tardbpl
XR_002474820.2 mRNA upstream 210933 51705868 ~ 51710349 (+) True tardbpl
XM_036988264.1 mRNA upstream 211823 51705866 ~ 51709459 (+) False tardbpl
XM_036988263.1 mRNA upstream 211823 51705867 ~ 51709459 (+) False tardbpl
XM_021616112.2 mRNA upstream 211823 51705868 ~ 51709459 (+) False tardbpl
XM_021616142.1 mRNA downstream 249568 52174010 ~ 52176441 (+) True LOC110532337
XM_021616144.2 mRNA downstream 257786 52182228 ~ 52189437 (+) True LOC110532339
XM_036988289.1 mRNA downstream 282784 52207226 ~ 52216054 (+) False si:dkey-6n6.1
XM_036988288.1 mRNA downstream 282786 52207228 ~ 52216054 (+) True si:dkey-6n6.1
LOC110531199 mRNA downstream 296395 52220837 ~ 52224935 (+) True LOC110531199
TU927907 other upstream 574788 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 842340 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1120901 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1120901 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 2805664 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 398829 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 801979 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2802429 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 3308816 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3606595 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile