RNA id: LOC110531199


Basic Information

Item Value
RNA id LOC110531199
length 1942
RNA type mRNA
GC content 0.43
exon number 7
gene id LOC110531199
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52220837 ~ 52224935 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGATTCCCTTCTCTGTTGTTGTTCTCCTGCTGTGTGCCACCCCTCCACCCACCCCCTCTGTGGCACTGCCCTTTGAGCAGGAGGGCTTCTTAGACTTTGGGAAGCGCATCGATGTAGAggggctgatgatgatgatgaacgaTGAAGAGGAGGGCTCAGCAGTTGAGGAATACTACAAACCAGAATACTACAAACCAGAACAGCCTACTTGCCCATTCGGCTGTCAGTGTAACCAGAAGGTTGTGCAGTGCTCTGACTTGGGTTTACACTATGTGCCATATGACGTCCCCCCGGAGACCAGGCTCCTGGACCTTCAAAGCAACCAGATCACAGAGATAAGAGAGGATGACTTCAAGGGTCTCAGCAACCTCTATGCTCTGGTGTTGGTGAATAACAAGATCTCCAGGGTGCACCTGCGGGCCTTCATGCCCCTCAGAAGGATGCAAAAGCTCTACTTCTCCCACAACCAGTTGACAGCCGTGCCCAAGAACCTGCCCTCCTCCCTGGTGGAGCTCCGTATccatgacaaccatatcaagaaGGTGGCGGCTGGAGATTTCTCTGGCCTGGGCAGCATGAATTGCATTGATGGGAGGAATCCTATTCAGAACAGTGGTTTGGAGCTGGGAGCCTTTGATGGTCTCAAACGTACCTTCCTTCGCATTTCTGAGGCAAAACTCACAGGCATCCCTAAAGATCTCCCCGAGGGTCTACATGAGTTGCTTTTGGATCAGAATCAAATTCAAGCCATTGAACTAGAAGACCTAAGGCAATATGAGGGTTTGCACAGGTTGGGTCTAGGCTACAATCACATTCACCACATTGAGCACGGCAGCCTGTATTACCTAAAAACCTGAGAGAGCTGCATCTTGAGAACAACCGGATCCCCAATGTCCCTGGAGGCCTTGCTGGAATGAAGTAGTTGCAGgTGGTCTACCTTCACTCCAACAACATCAGCCAGGTTGACATGAATGACTTCTGCCCTGAGGGTTTTGGTGTGAAGAAGACTTACTACAACGGGATCAGTCTCTTTGATAACCCAATCAACTATTGGGAGGTGGAGCCGGCCACCTTCCGCTGTGTCAGCAACAGGATGGCCGTACAGTTTGGCAACCACAAAAAGTAGTGCATGAGAGGCACCAGCTGGGGAGGAATACATGCAACTCAGATGTAAAATAAATTACTTTATTACACAGTTCAAAAACAATGAATTGATAGTCTGACGTAGCGTAAAAGATAGATAACTAAAACATAACAAAAGTCTGTTTTGCATGCATGGGGTGGGCGATATTGTATATTGGGAAAAAATGCATCATCCTCATcacttcaatcaatcaatccaatgTATTTCGATGAGACTTTGTTTTTTGTCAAATGTTAGGCGGGTCATTCCACGAAATGAGTCccttttgcgtccctttgatattttaagtaaaaATTTAGCACCAATAATGCATTTTAATAGTCAGTTAAattaagtgccctttaatatagagcACATTCATACTTGcaaattcagcattttgacatttTCCCATGTGTACTCTGGGACTTCAAGGAAGAgtttaacccacttaacccctACATTTTCCCAGGTTTTCACCATCATAGCCCTAGTTATTTTTGTTgcttgacaaagtcatttctgaagagtattatttatattatgtgattagtgattaattttaaggATAAAAaacctgtccctcattttaaggtcaaccatGATTATTAATAAATAATtttctttgtttgtttttgtttgatctCAACTGACCTTTGATCTGACAACTGATCTCATGTTTTGGATATAAAAGAACAATACAAACTGTCAGTTGAAAGCTTTAGTCACCTTCAGAAGAATTGATCACTCATAAactttgttaaaaaaaattgttaTGATGTGTTTGGAAATGATTTAGAATACATTTTGCATACCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928964 lncRNA upstream 21483 52198963 ~ 52199354 (+) True G816788
TU928957 lncRNA upstream 44096 52176538 ~ 52176741 (+) True G816781
TU928954 lncRNA upstream 48117 52172479 ~ 52172720 (+) True G816778
TU928904 lncRNA upstream 61010 52158839 ~ 52159827 (+) True G816729
TU928941 lncRNA upstream 63494 52157128 ~ 52157343 (+) True G816765
TU929001 lncRNA downstream 24610 52249545 ~ 52250147 (+) True LOC110531200
TU929073 lncRNA downstream 139705 52364640 ~ 52366398 (+) True G816872
TU929074 lncRNA downstream 142018 52366953 ~ 52371758 (+) True G816873
TU929076 lncRNA downstream 147249 52372184 ~ 52375043 (+) True G816875
TU929066 lncRNA downstream 200422 52425357 ~ 52443755 (+) True G816865
XM_036988289.1 mRNA upstream 4783 52207226 ~ 52216054 (+) False si:dkey-6n6.1
XM_036988288.1 mRNA upstream 4783 52207228 ~ 52216054 (+) True si:dkey-6n6.1
XM_021616144.2 mRNA upstream 31400 52182228 ~ 52189437 (+) True LOC110532339
XM_021616142.1 mRNA upstream 44396 52174010 ~ 52176441 (+) True LOC110532337
XM_021616133.2 mRNA upstream 296395 51921146 ~ 51924442 (+) False lzic
XM_021616147.2 mRNA downstream 4819 52229754 ~ 52234943 (+) False dedd
XM_021616148.2 mRNA downstream 4823 52229758 ~ 52234943 (+) False dedd
XM_021616149.2 mRNA downstream 4826 52229761 ~ 52234943 (+) False dedd
XM_036988290.1 mRNA downstream 4831 52229766 ~ 52234943 (+) True dedd
XM_036988291.1 mRNA downstream 21437 52246372 ~ 52250891 (+) False LOC110531200
TU927907 other upstream 874343 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1141895 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1420456 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1420456 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 3105219 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 98336 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 501486 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2501936 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 3008323 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3306102 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile