RNA id: XM_021616148.2


Basic Information

Item Value
RNA id XM_021616148.2
length 3330
RNA type mRNA
GC content 0.45
exon number 5
gene id dedd
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52229754 ~ 52234943 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AATCATACTGTGTACCGGATATTCTTTCATTTTAGTTGAGAAAGGACAATGGGCATGCTAATTGTAGCCTCTGGAAAGAGTGTGACATTATCCATCATAATTGTGTTTTCTGATCTTGAAGGAGCTTAGCATTCCACCAAGAACGTTAAGTAAGTAGgaaAGCAGTTTAAGTATTCAGACAACACAGAAGTTGTTGGGATTTCTGCATCCCCGTTGTCATCTTCCACCCCTAACAAAGTGATGACCTCACAGCAGCATCCCCTCCCCAATGCAAACGTCAACCCTCCCCTCCTTGTCCCCCAGAACTCTTCAGCTCACCAAGGTAGGCCTCACATTCACCCAAACCagctggactctactcagagtAGTGCTGCGGGGCACCTTGCCCCCCACAGAGGTCTGATGGGTGGTGTGGGGTCCTCATCAGTGGGGACCTCCAGCGGAGTGGCAGTGAACAGGGGCGCCTCGGCCTCCTGCACTAACTCTGCCATTTCCAGGAGGCCCTCGTCGGGACGCTTCGAACCCTGGCCCGAGGAGGCCGTAGACAATGCTTACGGCTTGTACTCGCTGCACCGCATGTTTGACATAGTGGGAGCCCAGCTTACGCACCGTGACGTGCGAGTGCTCTCCTTCCTGTTCGTGGACGTCATCGACGAGTATGAGCGCGGAGGCATCAGGAGCGGCCGGGACTTCTTGCTAGCTCTGGAGCGCCAGGGGCGCTGTGATGAGACCAACTTCAGACACGTCCTGCAGCTGCTCCGTATCATCACGCGGCACGACCTGCTGCCATACGTCACACTCAGGAAGAGACAGACCGTGTGCCCAGACCCAGTGGATAAGTACCTGGAAGAGACGTCAGTGCGTTATGTGTCccccagaggaggagagagcagggaggctACACCCCACAGGAGGACAGGCCCCCAACCAGTAATATGCTGTTCTCCATCGGGGCCCCAGGTGGGCCCCCCCCGCACCAAGCCAGGCCCCCCATTACCGAGCCGCAAAAGGAAGAGGGCCCACACCACAGGAGACTGCAGGGAGAAGCAAACCTGTGACATCCGCCTACGAGTGCGCGCCGAGTACTGCCAGCATGAATCAGCGCTTCAGGGAAACGTCTTCTCCAACAAGCAGGAGGCTCTGGAGAGGCAGTTTGAGAGGTTCAACCAGGCAAACACTATTCTCAAGTCCCGGGACCTGGGCTCCATCATCTGTGACATCAAGTTCTCGGAGCTCACATACCTAGATGCTTTCTGGCGGGATTATATCAACGGCTCCCTGCTGGAGGCCCTGAAGGGCGTCTTCATCACAGACTCACTCAAACAGGCAGTGGGCCATGAGGCCATCAAACTGCTGGTCAATGTGGATGAGGAGGACTATCAGGCTGGCCGCCGCAAGCTGCTCCGGAACCTGGTCACTGGAGGTGGGGCCGGGGCCGGGGCTGCTGCCACACCCGACGGGAGCAGAGGGACTCCATCCTCTTAGAAGCGCATGTCTGCTTCTTTTAGCAGGGGGGGGGCACCCATGTCCCAAATAAGATAACTTAACGGCGAGGACAGAAGCAAGGAAAGTATAAAGTACGTTCTGATTCAGGAAGAAGTATGAGGAAGAATGCTGGGTGCCCTGCCCTTTCATCTATGAAGGGAATGTGAAATTAAAGTGAGCAAGAGTAAGTTGAGTTAGATGTATGGAACACAGACATAAGATAAGTGTTTTGAATGTTGAAGGTTTAGTTTTTTCTGCTGGAAGGACAATGCTAATATTTTATATTGTAACTTGTGAATTGACTATAAAATCTGATTTAACATTTTCTTTTGGTATCACACAGCTCTTTGCCATAAAGTGTTCTTGAAAAGTCCCTTAGTAGACTATTACTACACATGGCTATAAACAAGTCCCTATTGGGACATTTAGCATTTTGTTTACTGCCAGACAGGGACAAAATCATTGTAAGCCAGTGACATGCCATCATTATAATTATTTGGTAGTAAataatttaaaaatatttttggtaTGTTGTCAAATGAACAATTGTGTGGGTCATTCTTGATGATTTGGTTCAAAAGGATTGAAAAGATTAAGCGTACTGAGTGGTTTCAGATGTGCTTGAAAATTGCAATACAAAATTCAACAACAGAGTGCAGTAATAAGTATAAAAAAACAGCGTCATTTTGAAATAATTTTGACCCCAAATACTGTATCTACCCTCATCTCAAATACAAATGTCCTTTTTGAATATGTGTATTCACCCATGGCTCAGACTTCTATTTCTTGATTTGCTTGTCAATATTAGAATTTAATCAGAAAGACGCATTCATTAAAGCTGGAATCTTTAGTGGTGAAACTGCCACGTCtgtttgcgatattacaacaacaaagacagtacttcaaacaacactgtttttttccccctctgacaTCATCTCACATCATTGCAAGCACGATAGAACAGCAGAGTAGGTACCACAATGCTCCGCTGCTCTGTttccaaaacaaaaacaaaagcacCTGGGGTTTTTAAAACAACTTTAACAATTGTTTTATTATAGTTTTATTAGAGTTACAACCAACATACAAAGTTCCCCCCTTGTTTTTGCTTTTTAATTGTAATTTCATGTAAAGAGAAAAGGCTCTACACACTGCATTTAGTACTTTCAACCATTTATTTGGGGGAAGTACACTGGGAGCACCATTTTGTTTGATTGAGTTCATCAATATCATAGATTTTACTACAACGGTATAATTAGGTATATTGTATTTCATGCAAATGTACAAGACCAGAGTAGTTGGTGATTATTTTGGACCACATTTTCAAAACATCTTTGTCCACAGTTCATTATCCTACAATCAATCTGACACAATGTAGCATGGTGTAGTGCTATCCAAGTTAGGAGCCTCTGATACTTGCTTTAGGAAACAAGGCAACTTTAAACATGTTTTACCGCCTTGGACCAATCAGTAAGTTTAGTCAAAATCGTCccagtgctgtctgagatatcgTGTGTGATGAACGTACAGGCAGAGTCAGATCCACAGACGATTAACATTGATCAGACTGCCATCTGATAAAATATTTAATACAGTTGGCTATACCTTTGACATATGAGGGTGTTTTCTAGGCAACATTTTTTATAGGTTGTGAGGTTGGCTTTCATAGATGCAGCAAGGTCAAGAGCAGTGATGTGTTGGAAAGTGGTTCACTTCATACTTGTTTGCATTGTAAGAATGTCCTCAGTCTCATATACAGATGTggtcaaatatattggcacccttgcttGATTCACTATTTATTCTAAAATAAGttgaaattaaaaaatattttggattTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928964 lncRNA upstream 30404 52198963 ~ 52199354 (+) True G816788
TU928957 lncRNA upstream 53017 52176538 ~ 52176741 (+) True G816781
TU928954 lncRNA upstream 57038 52172479 ~ 52172720 (+) True G816778
TU928904 lncRNA upstream 69931 52158839 ~ 52159827 (+) True G816729
TU928941 lncRNA upstream 72415 52157128 ~ 52157343 (+) True G816765
TU929001 lncRNA downstream 14602 52249545 ~ 52250147 (+) True LOC110531200
TU929073 lncRNA downstream 129697 52364640 ~ 52366398 (+) True G816872
TU929074 lncRNA downstream 132010 52366953 ~ 52371758 (+) True G816873
TU929076 lncRNA downstream 137241 52372184 ~ 52375043 (+) True G816875
TU929066 lncRNA downstream 190414 52425357 ~ 52443755 (+) True G816865
LOC110531199 mRNA upstream 4823 52220837 ~ 52224935 (+) True LOC110531199
XM_036988289.1 mRNA upstream 13704 52207226 ~ 52216054 (+) False si:dkey-6n6.1
XM_036988288.1 mRNA upstream 13704 52207228 ~ 52216054 (+) True si:dkey-6n6.1
XM_021616144.2 mRNA upstream 40321 52182228 ~ 52189437 (+) True LOC110532339
XM_021616142.1 mRNA upstream 53317 52174010 ~ 52176441 (+) True LOC110532337
XM_036988291.1 mRNA downstream 11429 52246372 ~ 52250891 (+) False LOC110531200
XR_005053283.1 mRNA downstream 16174 52251117 ~ 52253412 (+) False LOC118966072
XM_021616159.2 mRNA downstream 25235 52260178 ~ 52293328 (+) False LOC110532344
XM_021616161.2 mRNA downstream 25235 52260178 ~ 52293328 (+) False LOC110532344
XM_021616160.2 mRNA downstream 25236 52260179 ~ 52293328 (+) False LOC110532344
TU927907 other upstream 883264 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1150816 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1429377 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1429377 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 3114140 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 88328 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 491478 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2491928 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2998315 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3296094 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile