RNA id: XM_036988291.1


Basic Information

Item Value
RNA id XM_036988291.1
length 1655
RNA type mRNA
GC content 0.50
exon number 6
gene id LOC110531200
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 52246372 ~ 52250891 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTACCTTGTAAGTGGCCCCAAAGAACCCCTTTGGGTATGAGAGCACTTCGTAAAAATAGTTTGAATATTTCCAAGGCGATGGAAAATAAACGCCAGGCAGTGGCTGTTTCTTCACTTCTCCTTGTTTGCTCCAATGAAGGAGCATCTCGAGTTCTAGACAGACTCAGTGCTGGAGGAGTACGTTTAGTGGATGGCCCATACAACTGCTCTGGCAGGGTGGAGGTGTACTATGCAGGCCAGTGGGGTACAGTGTGTGATGACAACTGGGACCTGCTGGATGCCAAGGTAGTGTGTAGAGCACTGGGCTGTGGGGCAGCCCAGAAGGCCCTGGACCAGGCCCACTTTGGCGGGGGTAAGGGGGAGATCTGGCTAGATGATGTGGAATGTTCTGGGAATGAAGAGTCACTGCTTAGCTGCAGCTCAGATGGTCTTGGGTCACACAACTGTGGACACTTTGAGGATGCAGGAGTGATATGTGAGGGTCAGTCAGGTCAACCCCCTTCAGACTCCCAttCTGGCTTGACAGTGCGCATAGTTGATGGTCCCAATCACTGCTCTGGAAGGGTGGAGGTCTACCATGATGGGAGTTGGGGGACAGTCTGTGATGATAATTGGGGTTTCCTAGATGCCCAAGTTGTATGTAGGGAGCTGAGCTGTGGACCAGCCACAGAGGCTCCTCACCAGGCTTACTTTGGTGAGGGGAGTGGCTCAATCCTATTGGACGATGTGGCATGCATGGGAAGTGAGGGATCTTTACTGGAATGCAACTCAGGAGGGATAGGAAACCATAACTGTGGCCATGATGAAGATGCCAGTGTAACTTGCATGATGGTGGTCCCAGATGATGGCCCGTTGATCCGGCTGGTGGATGGTCCTGATCAGTGTTCAGGGAGGGTGGAAGTGTATTATGCGGGGCAGTGGGGTACGGTGTGTGATGATGACTGGGACGTGAGCGACGCTGACGTGGTCTGCAGACAGCTCAGCTGTGGGTGGGCTATGGATGCCCCCGGACAGGCCTGGTTTGGTATGGGAGTTGGCATTCCCATTCTGCTGGACAACATAGCCTGTGTTGGCACAGAAGGCACTCTCTTTGACTGCCCCTCTGAGGCGATAGGTCAGCATAACTGCATGCATCCTGAGGATGCGAGTGTGGTCTGCTCAGGTGAGATTAAAGGGGAAGTTCCGTATTTTACTGTTAGATGGTTCCTGACCCTGAAAGTAGTTTATGGGCGAAACTGTAATCTTCGGTTGAGTTTTATCTAAACAGCTACTACAAATTTCAGCTCATTTAAGGCACAGTTAGCTTTATTTATTAATAACGCTTTTCAaggtaacatacagtatatgcaaCAACTCTTTGTTTTCCATGATCCTCCCTATGGATTGCAGGTTCACACCAGAGTGAGTACATTAATTTGTCTGCACACTACACAATAATCTCCACAGCCTGATGCATCAATTTGTTAACAGATTATTTACCTATTTACCTGGACCTTCAATTCGCTTGGCCGGTGGCTCCAACAACTGCTCTGGTAGAGTGGAGGTGTTCCACTCTGGCCAGTGGGGTACAGTGTGTGATGATGACTGGGATCTGAAACATATGTACACCTCGTAATTGATcgttaaaatgtttttatttgccTCTCGGGTGGCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU928964 lncRNA upstream 47018 52198963 ~ 52199354 (+) True G816788
TU928957 lncRNA upstream 69631 52176538 ~ 52176741 (+) True G816781
TU928954 lncRNA upstream 73652 52172479 ~ 52172720 (+) True G816778
TU928904 lncRNA upstream 86545 52158839 ~ 52159827 (+) True G816729
TU928941 lncRNA upstream 89029 52157128 ~ 52157343 (+) True G816765
TU929073 lncRNA downstream 113749 52364640 ~ 52366398 (+) True G816872
TU929074 lncRNA downstream 116062 52366953 ~ 52371758 (+) True G816873
TU929076 lncRNA downstream 121293 52372184 ~ 52375043 (+) True G816875
TU929066 lncRNA downstream 174466 52425357 ~ 52443755 (+) True G816865
TU929117 lncRNA downstream 179095 52429986 ~ 52431199 (+) True G816914
XM_021616147.2 mRNA upstream 11429 52229754 ~ 52234943 (+) False dedd
XM_021616148.2 mRNA upstream 11429 52229758 ~ 52234943 (+) False dedd
XM_021616149.2 mRNA upstream 11429 52229761 ~ 52234943 (+) False dedd
XM_036988290.1 mRNA upstream 11429 52229766 ~ 52234943 (+) True dedd
LOC110531199 mRNA upstream 21437 52220837 ~ 52224935 (+) True LOC110531199
XR_005053283.1 mRNA downstream 226 52251117 ~ 52253412 (+) False LOC118966072
XM_021616159.2 mRNA downstream 9287 52260178 ~ 52293328 (+) False LOC110532344
XM_021616161.2 mRNA downstream 9287 52260178 ~ 52293328 (+) False LOC110532344
XM_021616160.2 mRNA downstream 9288 52260179 ~ 52293328 (+) False LOC110532344
XM_021616150.2 mRNA downstream 9289 52260180 ~ 52294856 (+) False LOC110532344
TU927907 other upstream 899878 51345372 ~ 51346494 (+) True G815767
TU927741 other upstream 1167430 51078447 ~ 51078942 (+) True G815610
TU927553 other upstream 1445991 50796214 ~ 50800381 (+) False G815428
TU927551 other upstream 1445991 50796320 ~ 50800381 (+) True G815428
TU925067 other upstream 3130754 49115137 ~ 49115618 (+) True G813139
TU929026 other downstream 72380 52323271 ~ 52325640 (+) True LOC110532349
TU929242 other downstream 475530 52726421 ~ 52727520 (+) True LOC110532368
TU932380 other downstream 2475980 54726871 ~ 54727376 (+) True G819897
TU933208 other downstream 2982367 55233258 ~ 55233798 (+) True G820665
TU933425 other downstream 3280146 55531037 ~ 55615401 (+) False dlgap4a

Expression Profile